mRNA_P-wetherbeei_contig10251.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10251.1.1
Unique NamemRNA_P-wetherbeei_contig10251.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10251.1.1 vs. uniprot
Match: A0A3R7G0W5_9STRA (Dihydrolipoyllysine-residue succinyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G0W5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.470e-5
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 2 
Query:    2 KHGVKLGFMSAFVKASCEALIELPAVNGCEPDGNRSQSWISFFD-SVPSST 151
            KHGVKLGFMSAFVKAS  AL+E+P VN    D ++   +  F D SV  ST
Sbjct:  328 KHGVKLGFMSAFVKASASALLEVPGVNAMIDDEHQEIVYRDFVDMSVAVST 378
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BLAST of mRNA_P-wetherbeei_contig10251.1.1 vs. uniprot
Match: A0A261Y551_9FUNG (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y551_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 5.480e-5
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 2 
Query:    2 KHGVKLGFMSAFVKASCEALIELPAVNG 85
            KHG+KLGFMSAF KASC AL ELPAVNG
Sbjct:  331 KHGIKLGFMSAFAKASCVALQELPAVNG 358
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BLAST of mRNA_P-wetherbeei_contig10251.1.1 vs. uniprot
Match: A0A662Y5U8_9STRA (Dihydrolipoyllysine-residue succinyltransferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5U8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.550e-5
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 2 
Query:    2 KHGVKLGFMSAFVKASCEALIELPAVNGCEPDGNRSQSWISFFD-SVPSST 151
            KHGVKLGFMSAFVKAS  AL+E+P VN    D ++   +  F D SV  ST
Sbjct:  365 KHGVKLGFMSAFVKASASALLEVPGVNAMIDDEHQEIVYRDFVDMSVAVST 415
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BLAST of mRNA_P-wetherbeei_contig10251.1.1 vs. uniprot
Match: A0A835Z206_9STRA (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z206_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.290e-5
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:    2 KHGVKLGFMSAFVKASCEALIELPAVNG 85
            KHGVKLGFMSAFVKAS +AL E+PAVNG
Sbjct:  189 KHGVKLGFMSAFVKASADALREIPAVNG 216
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BLAST of mRNA_P-wetherbeei_contig10251.1.1 vs. uniprot
Match: L8GT97_ACACA (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GT97_ACACA)

HSP 1 Score: 51.6 bits (122), Expect = 9.310e-5
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 2 
Query:    2 KHGVKLGFMSAFVKASCEALIELPAVNGCEPDGNRSQSWISFFD 133
            KHGVKLGFMSAFVKAS  AL E+PAVN      NR   +  + D
Sbjct:  191 KHGVKLGFMSAFVKASAAALKEIPAVNAVYDGSNREIIYRDYVD 234
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10251.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3R7G0W5_9STRA5.470e-556.86Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A261Y551_9FUNG5.480e-585.71Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A662Y5U8_9STRA5.550e-556.86Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A835Z206_9STRA9.290e-585.71Dihydrolipoyllysine-residue succinyltransferase n=... [more]
L8GT97_ACACA9.310e-559.09Dihydrolipoyllysine-residue succinyltransferase n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10251contigP-wetherbeei_contig10251:626..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size465
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.1749842-UTR-P-wetherbeei_contig10251:625..6301683185861.1749842-UTR-P-wetherbeei_contig10251:625..630Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10251 626..630 +
1683185861.189555-UTR-P-wetherbeei_contig10251:936..10901683185861.189555-UTR-P-wetherbeei_contig10251:936..1090Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10251 937..1090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.1824663-CDS-P-wetherbeei_contig10251:630..9361683185861.1824663-CDS-P-wetherbeei_contig10251:630..936Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10251 631..936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10251.1.1prot_P-wetherbeei_contig10251.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10251 631..936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10251.1.1

>prot_P-wetherbeei_contig10251.1.1 ID=prot_P-wetherbeei_contig10251.1.1|Name=mRNA_P-wetherbeei_contig10251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MASSLASCPPSSRRLARPSSSCPPSMGVSRMGIEVRAGSRFLIACLPPQS
LTSGCLFAPDFWPNIVSVFEQCGYLISLSAPPSLPSSWLALAACRTDQLP
V*
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mRNA from alignment at P-wetherbeei_contig10251:626..1090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10251.1.1 ID=mRNA_P-wetherbeei_contig10251.1.1|Name=mRNA_P-wetherbeei_contig10251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig10251:626..1090+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCATGGCGTCAAGCTTGGCTTCATGTCCGCCTTCGTCAAGGCGTCTT
GCGAGGCCCTCATCGAGCTGCCCGCCGTCAATGGGTGTGAGCCGGATGGG
AATCGAAGTCAGAGCTGGATCTCGTTTTTTGATAGCGTGCCTTCCTCCAC
AATCTCTGACTTCTGGTTGCCTCTTCGCACCAGACTTCTGGCCGAATATT
GTGAGCGTTTTTGAGCAATGTGGCTACTTGATCTCTCTTTCGGCGCCGCC
GTCATTACCAAGCTCTTGGCTGGCTCTCGCTGCCTGCCGGACCGATCAAT
TGCCTGTTTGATTGCCTGACCGATTGCCTGCTCCTGCGTGACTCGCTCCG
AATTCTTGTCCTCCTCTCTGTCCTTCTCTTCCCCTCCGAACCTTTCATAC
TTCCTTTTTCCTTTCCTCCTTCTTCCCTTTCATCCTTGCTTTCTCTTGCG
GCTTCTCCTGGCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10251:626..1090+

>mRNA_P-wetherbeei_contig10251.1.1 ID=mRNA_P-wetherbeei_contig10251.1.1|Name=mRNA_P-wetherbeei_contig10251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig10251:626..1090+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCAAGCTTGGCTTCATGTCCGCCTTCGTCAAGGCGTCTTGCGAG
GCCCTCATCGAGCTGCCCGCCGTCAATGGGTGTGAGCCGGATGGGAATCG
AAGTCAGAGCTGGATCTCGTTTTTTGATAGCGTGCCTTCCTCCACAATCT
CTGACTTCTGGTTGCCTCTTCGCACCAGACTTCTGGCCGAATATTGTGAG
CGTTTTTGAGCAATGTGGCTACTTGATCTCTCTTTCGGCGCCGCCGTCAT
TACCAAGCTCTTGGCTGGCTCTCGCTGCCTGCCGGACCGATCAATTGCCT
GTTTGA
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