mRNA_P-wetherbeei_contig10250.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10250.1.1
Unique NamemRNA_P-wetherbeei_contig10250.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: D7FIU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU3_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.020e-28
Identity = 79/169 (46.75%), Postives = 97/169 (57.40%), Query Frame = 1
Query:  253 PQARVSLEYSGNWQPHITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSA-SSDASDNESAEDSGSGGSALGSVSGAAC-----------------DERGQGERIMQVMNEVEMRLPAENDLRRERATRWDPDFSDSDGGGGKEDPEQSRQFKQLRSQHYNEFQALQQWR 705
            P+AR   +     + HITWDE TIAEH+KLRGTRQKIDEPSTPYHY S  SS  SD ESA+  G                               D RG    I++VM +V   LP+E+ LR+ER  RWD D S+   G  +ED E++R+FKQ R  HYNEF+ALQ+WR
Sbjct:   12 PEARPRSQDRKRSEVHITWDEPTIAEHDKLRGTRQKIDEPSTPYHYGSGESSTGSDCESADGKGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRGS---ILKVMADVSAALPSESALRKERQARWDSDVSE---GSSREDKEKARKFKQHREAHYNEFKALQEWR 174          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: A0A835YLV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.060e-23
Identity = 65/144 (45.14%), Postives = 89/144 (61.81%), Query Frame = 1
Query:  286 NWQPHITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIMQVMNEVEMRLPAENDLRRERATRW-DPDFSDSDGGGGKEDPEQSRQFKQLRSQHYNEFQALQQWRRRH 714
            N    I WDEE I EH+KLRGTRQKI EP TPY+++S S D SD ESA+    GGS + +  G    ++G+ + +  V+  V++RLP  + L +ER  RW D +  D  G     DP    +FKQ R+QHYNE+  ++QWR+RH
Sbjct:   37 NTDQRIRWDEEVIREHDKLRGTRQKISEPDTPYNFESQS-DISDCESADSGSRGGSVVATSPGG---DKGRAD-LEGVIKAVKVRLPTADQLNKERNARWEDEEVMDESG-----DPRDQHRFKQKRAQHYNEYHMMRQWRQRH 170          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: A0A835ZET2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.870e-23
Identity = 69/142 (48.59%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  298 HITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDER--GQGERIMQ-VMNEVEMRLPAENDLRRERATRWDPDFSDSDGGGGKEDPEQSRQFKQLRSQHYNEFQALQQWRRRH 714
            HI WDE TI EH+KLRGTRQKI+EP TPY++ S S D SD ESA+   S G ++ +VS AA      G G+  ++ V+  V++RLP  + L +ER  RW+    D  GG G +D ++   FKQ R+QHYNEF  ++QWR+RH
Sbjct:   41 HIRWDEATIEEHDKLRGTRQKINEPDTPYNFDSQS-DISDCESAD---SRGGSIIAVSPAAPGRTPAGGGQAALEGVIKAVKVRLPTADQLDKERTARWE---DDEQGGSGGQDQDR---FKQKRAQHYNEFHMMRQWRQRH 172          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: K3WN55_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WN55_GLOUD)

HSP 1 Score: 82.4 bits (202), Expect = 2.070e-15
Identity = 60/168 (35.71%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  256 QARVSLEYSGNWQPHITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIMQVMNEVEMRLPAENDLRRER-ATRWDPD------------FSDSDGGGGK--EDPEQSRQFKQLRSQHYNEFQALQQWRRRH 714
            + +V+   S +  PH+TWDEETIA H+ LRGTRQKI+EP+TPYHY  +  +  D  SA +       LG+VS A      + E  ++   E++ +L    D +++  A+ WD              F+D D  G K  +DP+    F   R  HYNEF+ ++ WR+ H
Sbjct:    2 EQQVTTSASASAAPHVTWDEETIAAHDLLRGTRQKIEEPNTPYHYYGSDHEDDDASSAGE-------LGAVSPARSASGREHEPKLE-WGELQTKLQRVQDTKQQHHASEWDSSDDEGSVGSKRSHFADRDEEGKKIVKDPK----FADKRKSHYNEFERVKAWRQAH 157          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: A0A8K1CPF5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPF5_PYTOL)

HSP 1 Score: 78.2 bits (191), Expect = 5.640e-14
Identity = 59/162 (36.42%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  292 QPHITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIMQVMNEVEMRLPAENDLRRERATRWDPD-------FSDSDGGGGK--EDPEQSRQFKQLRSQHYNEFQALQQWRRRHYRDDGEADADED 750
            +PH+TWDEETIA H++ RGTR KI+EP TPYHY  +          +D GS  +A G  S A      + E  ++  NE++++L    D ++   + WD         F+  D  G K  +DP+    F + R QHYNEF+ ++ WR+ H  +D E + +ED
Sbjct:    5 KPHVTWDEETIALHDQDRGTRMKIEEPKTPYHYYGS----------DDEGSHAAAEGVASPARSLSGKENEPSIE-WNELQVKLEEVQDRKK---SEWDSSDDEESRSFAARDAEGKKIVKDPK----FAEKRKQHYNEFERVKMWRQSHPDEDDEVEEEED 148          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: A0A5D6XSA3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSA3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.460e-14
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  292 QPHITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIMQVMNEVEMRLPAENDLRRERATRWDPDFSDSDGGGGKEDPEQSRQFKQL---------RSQHYNEFQALQQWRRRH 714
            +PH++WDEETIAEH+ LRGTRQKIDEP+TPYHY +A +               +  G ++  A    G+ +       E+  +L +     ++RA+ WD   S+SD  GG    E+  + K++         R  HYNEF+ ++ WR+ H
Sbjct:   26 KPHVSWDEETIAEHDLLRGTRQKIDEPNTPYHYYAAEA---------------AGEGELASPARSLSGREDAPSLEWGELHSKLQSV----KQRASDWD---SNSDDEGGAHFAERDAEGKKIAKDPKFASKRKMHYNEFERVKAWRQSH 153          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: A0A6G0XD36_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XD36_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.150e-13
Identity = 53/152 (34.87%), Postives = 72/152 (47.37%), Query Frame = 1
Query:  292 QPHITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIM--------QVMNEVEMRLPAENDLRRERATRWDPDFSDSDGGGGKEDPEQSRQFKQLRSQHYNEFQALQQWRRRHYRD 723
            +P I WDEETI  H+  RGTR KIDEP+TPYHY S S++        D+G   S +      A  E    + +            N  E++        ++ A+ WD D   S        P Q + F Q R QHYNEF+ ++QWR+ H  D
Sbjct:   16 RPRIKWDEETITLHDLDRGTRMKIDEPNTPYHYYSESAEG-------DAGIEISEVAMEMHDAMPENAMAKPLHAAAVSPAHSASNGKELQWDELQSKLKQHASEWDSDSDASSTSSRHRTPSQDKAFSQKRKQHYNEFERVKQWRKEHAND 160          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: A0A329RKL9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RKL9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.180e-12
Identity = 62/182 (34.07%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  235 SFDPLRPQARVSLEYSGNWQPHITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIMQVMNEVEMRLPAENDLRRERA--TRWDPDFSDSDGGGGK--EDPEQSRQFKQLRSQHYNEFQALQQWRRRHYRDDGEADADEDDDGSDR 768
            S  P   +A V+     N   H+TWDEETIA H+  RGTR KIDEP+TPYHY +   D            G S   S+SG       Q + +   + +V+ +  +E D   E +  T     F+  D  G K  +DP     F + R  HYNEF+ ++ W+ +H      AD D+DD+  D+
Sbjct:    6 SKSPPAHKALVTGHSHSNPDTHVTWDEETIALHDLDRGTRMKIDEPNTPYHYYAEGDDVG----------GVSPARSLSGREAQPPIQWDELQSKLQDVKDKKKSEWDSDEESSSSTSGGLQFATRDAEGKKIQKDPN----FSEKRKMHYNEFERVRAWKMQH------ADEDDDDENEDK 167          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: A0A3R7KMJ0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KMJ0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.760e-12
Identity = 53/152 (34.87%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  298 HITWDEETIAEHNKLRGTRQKIDEPSTPYHYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIMQVMNEVEMRLPAENDLRRERATRWDPDFSD-------------SDGGGGKEDPEQSRQFKQLRSQHYNEFQALQQWRRRH 714
            H++WDEETIA HN  RGTR KIDEP+TPYHY + S DA                  VS A    R Q ++     +E++ +L    D++  + + WD D  D             ++G   K+DP    QF + R  HYNEF+ ++ W+ +H
Sbjct:   38 HVSWDEETIARHNLDRGTRMKIDEPNTPYHYYAESDDA------------------VSPA----RSQSDQPPIQWDELQSKL---QDVQDAKKSEWDSDDGDERSSEDIQFAARDAEGKKIKKDP----QFAEKRKMHYNEFERVRAWKMQH 160          
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Match: B8CAZ3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAZ3_THAPS)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-11
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  280 SGNWQPHITWDEETIAEHNKLRGTRQKIDEPSTPY-HYQSASSDASDNESAEDSGSGGSALGSVSGAACDERGQGERIMQVMNEVEMRLPAENDLRR----ERATRWDPDFSDSDGGGG-----KEDPEQSRQFKQLRSQHYNEFQALQQWRRRHYRDDGEADADE 747
            +G  + H+TWDE  I EH+ LRGTR KIDEP+TPY HY   S D +   S +               + DE  +        N +E +L A  D R       A   D + SDS+G        K++ E  ++F+  R +HYNE +A+++W+  H  DD E D +E
Sbjct:   49 TGEEKKHLTWDEHAIEEHDLLRGTRMKIDEPNTPYTHYDHHSEDEASTSSGQHP------------RSPDENSKHLPPAIAWNALESKLQAVADKRDACPLSPAPSRDSNMSDSEGEEAVKRRKKKEMEHKKEFETHRKKHYNEAEAMKRWKMEHQNDDDEDDMEE 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10250.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU3_ECTSI6.020e-2846.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLV4_9STRA2.060e-2345.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZET2_9STRA2.870e-2348.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WN55_GLOUD2.070e-1535.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CPF5_PYTOL5.640e-1436.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XSA3_9STRA6.460e-1435.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0XD36_9STRA3.150e-1334.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A329RKL9_9STRA3.180e-1234.07Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3R7KMJ0_9STRA7.760e-1234.87Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
B8CAZ3_THAPS1.110e-1134.34Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10250contigP-wetherbeei_contig10250:734..2029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIU3
PFAMsIPP-2
Model size882
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.1e-11
EggNOG OGs2DZW0@1|root,2S7CG@2759|Eukaryota
Ec32 ortholog descriptionProtein phosphatase inhibitor 2 (IPP-2)
Ec32 orthologEc-20_002870.1
DescriptionProtein phosphatase inhibitor 2 (IPP-2)
Cds size372
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.1282032-UTR-P-wetherbeei_contig10250:733..12431683185861.1282032-UTR-P-wetherbeei_contig10250:733..1243Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10250 734..1243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.136381-CDS-P-wetherbeei_contig10250:1243..12491683185861.136381-CDS-P-wetherbeei_contig10250:1243..1249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10250 1244..1249 +
1683185861.1437662-CDS-P-wetherbeei_contig10250:1379..14961683185861.1437662-CDS-P-wetherbeei_contig10250:1379..1496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10250 1380..1496 +
1683185861.1511602-CDS-P-wetherbeei_contig10250:1780..20291683185861.1511602-CDS-P-wetherbeei_contig10250:1780..2029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10250 1781..2029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10250.1.1prot_P-wetherbeei_contig10250.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10250 1244..2029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10250.1.1

>prot_P-wetherbeei_contig10250.1.1 ID=prot_P-wetherbeei_contig10250.1.1|Name=mRNA_P-wetherbeei_contig10250.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MQVMNEVEMRLPAENDLRRERATRWDPDFSDSDGGGGKEDPEQSRQFKQL
RSQHYNEFQALQQWRRRHYRDDGEADADEDDDGSDRTENSGPDRDHHHRS
NGVGGPGHGGHGGFGGSGGGNGSG
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mRNA from alignment at P-wetherbeei_contig10250:734..2029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10250.1.1 ID=mRNA_P-wetherbeei_contig10250.1.1|Name=mRNA_P-wetherbeei_contig10250.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig10250:734..2029+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGAGACAAGGCCAGCGGCGCTTAATCTCTTCACAGCCATGATGGAC GGCGGAGACGACGACGGCGGCAACGGGCAGAAACCCAGGTGACTTTTTAA TCGAACTCTTTCCTCTCGGGAGTGCGAGGTCTTCCTGTCAAAAAACCCTT GGACACTCGTTGATCATAAGTAGAACTCCTCCGCACCATCAACGATTGTC GAATTTTACCTACGACGTTTCTGGTATTTGTGTATCATTTGATCCTCTCC GTCCTCAAGCACGCGTCTCCCTTGAATACAGCGGCAACTGGCAACCCCAC ATAACATGGGACGAGGAAACAATTGCCGAACACAACAAGCTGCGCGGCAC GCGCCAGAAGATCGACGAGCCTTCAACGCCCTACCACTACCAATCCGCTT CAAGCGACGCCTCGGACAACGAGTCGGCCGAAGACAGTGGATCGGGCGGA TCGGCGCTAGGCTCCGTGTCAGGCGCTGCATGCGACGAACGAGGCCAGGG CGAGCGCATCATGCAGGTAATTGCCATGGGACGAGGGAAAGGAAGCTCTC CGTGTACGACCGCTCATGCAATAAAGCAATTTCGTCTCTTTCCTTACTCT GACTGCGCGACATGTTCACTTGATCGTTACCCGCCCGGGTGGGCAGGTCA TGAACGAGGTGGAGATGCGGCTGCCCGCGGAGAACGACCTCAGGCGGGAA CGTGCGACGCGGTGGGATCCGGACTTCTCCGACTCGGACGGCGGCGGCGG CAAGGAAGACCCGGTGAGCGAATTGCCGCGACTTTTTCGGGGCACGAGCG CCATTGCACAATTTTACAACCGGTTCCCTAGTTGTTTGCCTTGCCAAGCC TTTCCACTTTGACGGACGGTATCAGCCAGCAGACGCTTCTTCATTCGTTG CCGTCGTTGCTTTCGGTCTCACCGATGCCTTTCCTTGGCCAGCATTATCG CCCTTCGAACGCTCTCTTGTTCCATCGGGCTCAGTTTGAGCGATTCTTCA CGCTGAGATTACAATTGTCCGTCCTCCCTTTTTCTTTACTGAATCAGGAG CAATCCCGGCAGTTCAAGCAACTGCGGTCGCAGCACTACAATGAGTTTCA GGCGCTGCAGCAGTGGCGGCGTCGGCACTATCGGGACGACGGCGAGGCCG ATGCCGACGAGGATGACGACGGCAGCGACCGCACGGAAAACAGCGGCCCG GACCGCGACCACCACCATCGCAGTAACGGCGTGGGCGGGCCCGGCCACGG GGGGCACGGCGGCTTCGGCGGCAGCGGTGGCGGCAACGGCAGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10250:734..2029+

>mRNA_P-wetherbeei_contig10250.1.1 ID=mRNA_P-wetherbeei_contig10250.1.1|Name=mRNA_P-wetherbeei_contig10250.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig10250:734..2029+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGTCATGAACGAGGTGGAGATGCGGCTGCCCGCGGAGAACGACCT
CAGGCGGGAACGTGCGACGCGGTGGGATCCGGACTTCTCCGACTCGGACG
GCGGCGGCGGCAAGGAAGACCCGGAGCAATCCCGGCAGTTCAAGCAACTG
CGGTCGCAGCACTACAATGAGTTTCAGGCGCTGCAGCAGTGGCGGCGTCG
GCACTATCGGGACGACGGCGAGGCCGATGCCGACGAGGATGACGACGGCA
GCGACCGCACGGAAAACAGCGGCCCGGACCGCGACCACCACCATCGCAGT
AACGGCGTGGGCGGGCCCGGCCACGGGGGGCACGGCGGCTTCGGCGGCAG
CGGTGGCGGCAACGGCAGCGGT
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