mRNA_P-wetherbeei_contig10247.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10247.3.1
Unique NamemRNA_P-wetherbeei_contig10247.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A3C0TWD2_9PROT (DUF1289 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWD2_9PROT)

HSP 1 Score: 139 bits (349), Expect = 1.400e-41
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1
Query:    1 MALSPQRQSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRADFYADGGEVNFSPFDYE 222
            MA+S QRQSPCIQVCQ+N QTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLG+RRADF+  GG++NFSPFDYE
Sbjct:    1 MAVSAQRQSPCIQVCQINVQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGQRRADFFDKGGQINFSPFDYE 74          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A351T3X4_9PROT (DUF1289 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T3X4_9PROT)

HSP 1 Score: 106 bits (265), Expect = 9.440e-29
Identity = 46/74 (62.16%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 MALSPQRQSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRADFYADGGEVNFSPFDYE 222
            M+LS QRQSPCI+VCQM+++TGFC+GCFR+ EEIA+WLRY+D+ER+AV+  LGKRRA+++ +GG+  FS F ++
Sbjct:    1 MSLSAQRQSPCIRVCQMDEETGFCSGCFRTPEEIAKWLRYSDDERDAVIAGLGKRRAEYFENGGKPAFSFFSFD 74          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A521AT30_9RHOB (Uncharacterized protein n=1 Tax=Paracoccus laeviglucosivorans TaxID=1197861 RepID=A0A521AT30_9RHOB)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-12
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:   22 QSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRA 171
            QSPCI +CQ++ ++G C GC RS +EIARW   +D+ER+A+++RL +RRA
Sbjct:    3 QSPCINICQIDPESGLCVGCLRSLDEIARWGGMSDKERQAIMDRLPERRA 52          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: B0SQN3_LEPBP (Uncharacterized protein n=1 Tax=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) TaxID=456481 RepID=B0SQN3_LEPBP)

HSP 1 Score: 64.7 bits (156), Expect = 2.560e-12
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   19 RQSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRA 171
            ++SPCI+VC M+  +G CAGC+R+ EEI  W R TDEE+EAV   L +R+A
Sbjct:    3 QKSPCIKVCMMDPDSGLCAGCYRTIEEIGNWSRMTDEEKEAVWRELPQRKA 53          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A2N0AR00_9LEPT (DUF1289 domain-containing protein n=2 Tax=Leptospira levettii TaxID=2023178 RepID=A0A2N0AR00_9LEPT)

HSP 1 Score: 63.9 bits (154), Expect = 5.160e-12
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   19 RQSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRA 171
            R+SPCI++C M+ ++GFCAGC+R+ EEI  W   +DEE+EAV   L  R+A
Sbjct:    3 RKSPCIKICMMDPESGFCAGCYRTIEEIGAWSSMSDEEKEAVWQELPHRKA 53          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A4R9GH48_9LEPT (DUF1289 domain-containing protein n=1 Tax=Leptospira fletcheri TaxID=2484981 RepID=A0A4R9GH48_9LEPT)

HSP 1 Score: 63.9 bits (154), Expect = 5.550e-12
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   22 QSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRA 171
            +SPCI+VC+MN +TG+C GCFR+ EEI  W  YT+EER+ + + L  R++
Sbjct:    4 RSPCIKVCEMNPETGYCQGCFRTIEEIGMWTAYTEEERKRIRSELLDRKS 53          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A4R9GSJ3_9LEPT (DUF1289 domain-containing protein n=1 Tax=Leptospira fluminis TaxID=2484979 RepID=A0A4R9GSJ3_9LEPT)

HSP 1 Score: 63.9 bits (154), Expect = 5.550e-12
Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   22 QSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRA 171
            +SPCI+VC+M+ +TGFC GCFR+ EEI  W  YT+EER+ + ++L  R++
Sbjct:    4 RSPCIKVCEMDPETGFCQGCFRTLEEIGMWTAYTEEERKRIRSQLLDRKS 53          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A2E5UX82_9PROT (DUF1289 domain-containing protein n=1 Tax=Oceanicaulis sp. TaxID=1924941 RepID=A0A2E5UX82_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 6.430e-12
Identity = 24/52 (46.15%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 QSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRADF 177
            ++PC++VC ++ +TG C GCFR+ EE+ RW RY++EER+A++  L +R A +
Sbjct:   11 RTPCVKVCFVDPETGVCLGCFRTMEELGRWTRYSNEERDAIMQALPEREAAY 62          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: A0A5F1ZU68_9LEPT (DUF1289 domain-containing protein n=2 Tax=Leptospira TaxID=171 RepID=A0A5F1ZU68_9LEPT)

HSP 1 Score: 63.5 bits (153), Expect = 8.070e-12
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   22 QSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRR 168
            +SPCI++C M+ +TG C GCFR+ EEI RW+ YT+EER+A+  ++ +R+
Sbjct:    4 RSPCIKICTMDPETGLCEGCFRTLEEIGRWVIYTEEERKAIRIKIEERK 52          
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Match: Q0AR37_MARMM (Uncharacterized protein n=2 Tax=Maricaulis maris TaxID=74318 RepID=Q0AR37_MARMM)

HSP 1 Score: 63.9 bits (154), Expect = 9.830e-12
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 LSPQRQSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLNRLGKRRADFYA 183
            + P  ++PC+QVC ++ Q   C GCFR+ EE+ RW R++DEEREAV+  L +R   + A
Sbjct:   18 VKPPVRTPCVQVCFVDPQARLCVGCFRTMEELGRWTRFSDEEREAVMAALPEREKAYQA 76          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10247.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TWD2_9PROT1.400e-4186.49DUF1289 domain-containing protein n=1 Tax=Alphapro... [more]
A0A351T3X4_9PROT9.440e-2962.16DUF1289 domain-containing protein n=1 Tax=Alphapro... [more]
A0A521AT30_9RHOB1.210e-1254.00Uncharacterized protein n=1 Tax=Paracoccus laevigl... [more]
B0SQN3_LEPBP2.560e-1254.90Uncharacterized protein n=1 Tax=Leptospira biflexa... [more]
A0A2N0AR00_9LEPT5.160e-1252.94DUF1289 domain-containing protein n=2 Tax=Leptospi... [more]
A0A4R9GH48_9LEPT5.550e-1252.00DUF1289 domain-containing protein n=1 Tax=Leptospi... [more]
A0A4R9GSJ3_9LEPT5.550e-1252.00DUF1289 domain-containing protein n=1 Tax=Leptospi... [more]
A0A2E5UX82_9PROT6.430e-1246.15DUF1289 domain-containing protein n=1 Tax=Oceanica... [more]
A0A5F1ZU68_9LEPT8.070e-1251.02DUF1289 domain-containing protein n=2 Tax=Leptospi... [more]
Q0AR37_MARMM9.830e-1245.76Uncharacterized protein n=2 Tax=Maricaulis maris T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10247contigP-wetherbeei_contig10247:1992..2216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1071679.BG57_09520
PFAMsDUF1289,MaoC_dehydrat_N,MaoC_dehydratas
Model size225
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.68e-12
EggNOG OGsCOG2030@1|root,COG3313@1|root,COG2030@2|Bacteria,COG3313@2|Bacteria,1NDST@1224|Proteobacteria,2VY7N@28216|Betaproteobacteria,1K2TC@119060|Burkholderiaceae
DescriptionPFAM MaoC domain protein dehydratase
Cds size225
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.9665694-CDS-P-wetherbeei_contig10247:1991..22161683185860.9665694-CDS-P-wetherbeei_contig10247:1991..2216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10247 1992..2216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10247.3.1prot_P-wetherbeei_contig10247.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10247 1992..2216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10247.3.1

>prot_P-wetherbeei_contig10247.3.1 ID=prot_P-wetherbeei_contig10247.3.1|Name=mRNA_P-wetherbeei_contig10247.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
MALSPQRQSPCIQVCQMNQQTGFCAGCFRSQEEIARWLRYTDEEREAVLN
RLGKRRADFYADGGEVNFSPFDYE*
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mRNA from alignment at P-wetherbeei_contig10247:1992..2216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10247.3.1 ID=mRNA_P-wetherbeei_contig10247.3.1|Name=mRNA_P-wetherbeei_contig10247.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig10247:1992..2216- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTGTCCCCACAACGTCAATCCCCCTGTATTCAGGTCTGCCAGAT GAACCAGCAGACCGGCTTTTGCGCTGGCTGTTTTCGCAGCCAGGAAGAAA TCGCGCGCTGGCTGCGCTATACGGATGAAGAACGCGAAGCGGTGCTGAAC AGGCTGGGCAAGCGCCGGGCGGATTTTTACGCCGATGGCGGGGAGGTGAA TTTCTCACCTTTCGACTACGAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10247:1992..2216-

>mRNA_P-wetherbeei_contig10247.3.1 ID=mRNA_P-wetherbeei_contig10247.3.1|Name=mRNA_P-wetherbeei_contig10247.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig10247:1992..2216- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTGTCCCCACAACGTCAATCCCCCTGTATTCAGGTCTGCCAGAT
GAACCAGCAGACCGGCTTTTGCGCTGGCTGTTTTCGCAGCCAGGAAGAAA
TCGCGCGCTGGCTGCGCTATACGGATGAAGAACGCGAAGCGGTGCTGAAC
AGGCTGGGCAAGCGCCGGGCGGATTTTTACGCCGATGGCGGGGAGGTGAA
TTTCTCACCTTTCGACTACGAATAA
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