mRNA_P-wetherbeei_contig1024.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1024.4.1
Unique NamemRNA_P-wetherbeei_contig1024.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1024.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1024contigP-wetherbeei_contig1024:3157..4852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1696
Hectar predicted targeting categoryother localisation
Exons1
Cds size1458
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.5130222-UTR-P-wetherbeei_contig1024:3156..33151683185860.5130222-UTR-P-wetherbeei_contig1024:3156..3315Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1024 3157..3315 -
1683185860.5276468-UTR-P-wetherbeei_contig1024:4773..48521683185860.5276468-UTR-P-wetherbeei_contig1024:4773..4852Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1024 4774..4852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.5206308-CDS-P-wetherbeei_contig1024:3315..47731683185860.5206308-CDS-P-wetherbeei_contig1024:3315..4773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1024 3316..4773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1024.4.1prot_P-wetherbeei_contig1024.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1024 3316..4773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1024.4.1

>prot_P-wetherbeei_contig1024.4.1 ID=prot_P-wetherbeei_contig1024.4.1|Name=mRNA_P-wetherbeei_contig1024.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=486bp
MAKARGSNGTFQSSPVFLAGLGQQGPSRPSQLWGRQALPAKAPPPWHLTE
GERAVLRILDAEARGVAADPEDALVALPLPPRQPPPMLPVSKAVYPPTWG
RRLRHGSLRPPVQTSAPDGALAAANHPAEMQDLSSRAHAALRELEGVLES
ASQAEAAYRHVASSPAYTGPFQPHRAYSASPPPLSSMANWAAAAATVKAA
PRIAPSPAWATTPRLPKTGVSAAADSGAVGSGVRRTWQRHPVNQARRGST
DAAAASAGVKGPQRALLGALSQPSPAKGPLQPYVPIGSPAFARMSGHGGG
SGGGAVPWGGRGLQPRAQWKGAEADGGVRGEAQRRMAEEAFDDGDDGWTS
GAAAPSTASQARRDTAATMVAMGAGAADEDVPDFSFSAPPRVDFADDDAD
DANEGISPAPFPTSYGFALPSRVGKRGRTELEAAGNRRGKFEAAAAAAAA
TEEEEIDEEEGAATGPVPSRFVFSSPSAARKRQWK*
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mRNA from alignment at P-wetherbeei_contig1024:3157..4852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1024.4.1 ID=mRNA_P-wetherbeei_contig1024.4.1|Name=mRNA_P-wetherbeei_contig1024.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1696bp|location=Sequence derived from alignment at P-wetherbeei_contig1024:3157..4852- (Phaeothamnion wetherbeei SAG_119_79)
AACACACGCGAAGGAAGACCTCCGTTTTCCGTTCAACGCATCAACCGAAG
AGGCCTGGCGGATCGAGGTTCTTGGGGTCATGGCGAAGGCGAGAGGGAGC
AATGGTACCTTTCAAAGCAGCCCTGTGTTCCTTGCCGGATTAGGGCAGCA
AGGCCCCTCGAGACCGAGCCAACTCTGGGGGAGGCAGGCATTGCCAGCGA
AAGCGCCGCCGCCGTGGCATCTGACCGAGGGCGAGCGCGCTGTCTTGAGA
ATACTCGATGCCGAAGCAAGGGGAGTGGCAGCCGACCCTGAGGACGCCCT
CGTTGCGCTGCCGTTGCCGCCTCGGCAGCCACCGCCGATGCTGCCAGTTT
CGAAAGCGGTCTACCCTCCGACTTGGGGCCGGCGTCTGCGGCACGGGAGC
TTGCGACCGCCCGTCCAGACGTCCGCTCCGGATGGGGCGCTCGCCGCAGC
AAACCATCCTGCCGAAATGCAAGACCTGTCGTCCCGTGCCCACGCAGCGC
TACGAGAGTTGGAGGGAGTTTTGGAATCGGCCTCGCAGGCAGAGGCGGCG
TATCGGCATGTGGCGTCGTCTCCGGCGTACACTGGCCCGTTTCAGCCGCA
TCGGGCCTACAGCGCGTCTCCTCCGCCGCTGTCGTCGATGGCGAATTGGG
CTGCAGCGGCAGCGACAGTGAAAGCGGCTCCACGCATAGCACCATCGCCT
GCTTGGGCCACGACACCGCGTCTGCCAAAGACGGGCGTTTCCGCTGCGGC
AGACAGCGGAGCGGTCGGCAGCGGCGTGCGTCGGACCTGGCAGCGCCACC
CCGTCAATCAGGCGCGGCGCGGCAGCACAGATGCGGCCGCGGCCAGTGCC
GGCGTCAAGGGCCCCCAGCGTGCCCTCCTCGGCGCCTTGTCTCAGCCGAG
CCCCGCGAAGGGGCCCCTACAGCCGTATGTGCCCATCGGCAGCCCAGCCT
TTGCCAGGATGTCCGGTCATGGTGGCGGCAGCGGCGGCGGCGCGGTGCCG
TGGGGGGGCCGGGGGTTGCAGCCTCGTGCACAATGGAAGGGAGCCGAGGC
CGACGGCGGCGTACGCGGCGAGGCGCAGCGGCGAATGGCAGAAGAAGCTT
TTGACGACGGCGACGACGGTTGGACAAGCGGCGCGGCGGCTCCGTCAACC
GCCTCACAAGCGCGACGAGACACAGCGGCGACGATGGTGGCGATGGGAGC
CGGTGCGGCCGACGAAGATGTGCCGGACTTCTCGTTCTCGGCGCCTCCTC
GGGTCGACTTCGCCGACGATGACGCCGATGACGCCAACGAGGGCATTTCC
CCCGCGCCATTCCCCACATCATACGGCTTTGCATTGCCTTCGAGAGTTGG
GAAACGGGGGAGGACGGAGCTCGAGGCGGCGGGAAATCGACGGGGCAAGT
TCGAAGCGGCAGCGGCAGCGGCAGCGGCGACGGAAGAAGAGGAGATAGAC
GAGGAGGAAGGGGCAGCGACAGGGCCGGTTCCGAGCAGATTTGTGTTCTC
GTCGCCGTCGGCAGCGCGCAAGCGTCAGTGGAAGTAAGAAGGGGGCCCGG
CGCGAAATCTGTAGTGTTTGAGGCATCACAGAAAATCACATTTCAAGAGA
ATAACGAAGGTGGGGATGGCAGCATAGTTAGTTACAACAGACACTTTTGT
GGTTGTGGAAGTATTGGTTGTGAAGGTCAGTCTTTCTTAAAATCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1024:3157..4852-

>mRNA_P-wetherbeei_contig1024.4.1 ID=mRNA_P-wetherbeei_contig1024.4.1|Name=mRNA_P-wetherbeei_contig1024.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1458bp|location=Sequence derived from alignment at P-wetherbeei_contig1024:3157..4852- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGGCGAGAGGGAGCAATGGTACCTTTCAAAGCAGCCCTGTGTT
CCTTGCCGGATTAGGGCAGCAAGGCCCCTCGAGACCGAGCCAACTCTGGG
GGAGGCAGGCATTGCCAGCGAAAGCGCCGCCGCCGTGGCATCTGACCGAG
GGCGAGCGCGCTGTCTTGAGAATACTCGATGCCGAAGCAAGGGGAGTGGC
AGCCGACCCTGAGGACGCCCTCGTTGCGCTGCCGTTGCCGCCTCGGCAGC
CACCGCCGATGCTGCCAGTTTCGAAAGCGGTCTACCCTCCGACTTGGGGC
CGGCGTCTGCGGCACGGGAGCTTGCGACCGCCCGTCCAGACGTCCGCTCC
GGATGGGGCGCTCGCCGCAGCAAACCATCCTGCCGAAATGCAAGACCTGT
CGTCCCGTGCCCACGCAGCGCTACGAGAGTTGGAGGGAGTTTTGGAATCG
GCCTCGCAGGCAGAGGCGGCGTATCGGCATGTGGCGTCGTCTCCGGCGTA
CACTGGCCCGTTTCAGCCGCATCGGGCCTACAGCGCGTCTCCTCCGCCGC
TGTCGTCGATGGCGAATTGGGCTGCAGCGGCAGCGACAGTGAAAGCGGCT
CCACGCATAGCACCATCGCCTGCTTGGGCCACGACACCGCGTCTGCCAAA
GACGGGCGTTTCCGCTGCGGCAGACAGCGGAGCGGTCGGCAGCGGCGTGC
GTCGGACCTGGCAGCGCCACCCCGTCAATCAGGCGCGGCGCGGCAGCACA
GATGCGGCCGCGGCCAGTGCCGGCGTCAAGGGCCCCCAGCGTGCCCTCCT
CGGCGCCTTGTCTCAGCCGAGCCCCGCGAAGGGGCCCCTACAGCCGTATG
TGCCCATCGGCAGCCCAGCCTTTGCCAGGATGTCCGGTCATGGTGGCGGC
AGCGGCGGCGGCGCGGTGCCGTGGGGGGGCCGGGGGTTGCAGCCTCGTGC
ACAATGGAAGGGAGCCGAGGCCGACGGCGGCGTACGCGGCGAGGCGCAGC
GGCGAATGGCAGAAGAAGCTTTTGACGACGGCGACGACGGTTGGACAAGC
GGCGCGGCGGCTCCGTCAACCGCCTCACAAGCGCGACGAGACACAGCGGC
GACGATGGTGGCGATGGGAGCCGGTGCGGCCGACGAAGATGTGCCGGACT
TCTCGTTCTCGGCGCCTCCTCGGGTCGACTTCGCCGACGATGACGCCGAT
GACGCCAACGAGGGCATTTCCCCCGCGCCATTCCCCACATCATACGGCTT
TGCATTGCCTTCGAGAGTTGGGAAACGGGGGAGGACGGAGCTCGAGGCGG
CGGGAAATCGACGGGGCAAGTTCGAAGCGGCAGCGGCAGCGGCAGCGGCG
ACGGAAGAAGAGGAGATAGACGAGGAGGAAGGGGCAGCGACAGGGCCGGT
TCCGAGCAGATTTGTGTTCTCGTCGCCGTCGGCAGCGCGCAAGCGTCAGT
GGAAGTAA
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