mRNA_P-wetherbeei_contig10234.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10234.1.1
Unique NamemRNA_P-wetherbeei_contig10234.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.450e-9
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 KYKKSSFFDEISCDALDGRERGGGYRERNLNAETFGATSL 120
            KY KSSFFDEISCDALDGR R  G+ ER LN ETFGAT +
Sbjct:  237 KYNKSSFFDEISCDALDGRHRVPGFTERKLNTETFGATGV 276
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.000e-6
Identity = 30/43 (69.77%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 KYKKSSFFDEISCDALDGRER--GGGYRERNLNAETFGATSLV 123
            KY KSSFFDEISCDALDGR    GG   ER  N ETFGATS+ 
Sbjct:  339 KYNKSSFFDEISCDALDGRGHMPGGRGGERMRNTETFGATSVA 381
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: K3WC16_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC16_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 1.580e-5
Identity = 31/52 (59.62%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    4 YKKSSFFDEISCDALDGRE----RGGGYRERNLNAETFGATSLVYEDSGGGG 147
            Y+KSSFFD ISCDALD  E    R  GY ER LN ETFGA  L    S  GG
Sbjct:  235 YQKSSFFDTISCDALDRLEGNKGRMSGYEERKLNTETFGAVGLNNRRSFRGG 286
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.150e-5
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    7 KKSSFFDEISCDALDGRER--GGGYRERNLNAETFGATSLV 123
            +KSSFFDEISCDALDGR    GG   ER  N ETFGATS+ 
Sbjct:  222 EKSSFFDEISCDALDGRGHMPGGRGGERTRNTETFGATSVA 262
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: W4GVK0_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVK0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.360e-5
Identity = 29/44 (65.91%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    4 YKKSSFFDEISCDALDGRERGGGYR-----ERNLNAETFGATSL 120
            Y+KSSFFD ISCDALD  E  GG R     ER LN ETFGA SL
Sbjct:  315 YQKSSFFDTISCDALDRLEGNGGGRMRAQEERKLNTETFGAVSL 358
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: A0A3F2RWG2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWG2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.890e-5
Identity = 33/60 (55.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    4 YKKSSFFDEISCDALDG----RERGGGYRERNLNAETFGATSLVYEDS--GGGGNHGRYN 165
            Y+KSSFFD ISCDALD     R R  G  ER LN ETFGA  L    +  GG G  GR N
Sbjct:  212 YQKSSFFDTISCDALDRLEGQRARMSGAEERKLNTETFGAVGLNNRRNFRGGRGRGGRRN 271
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: A0A3R7GHF0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GHF0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.140e-5
Identity = 33/60 (55.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    4 YKKSSFFDEISCDALDG----RERGGGYRERNLNAETFGATSLVYEDS--GGGGNHGRYN 165
            Y+KSSFFD ISCDALD     R R  G  ER LN ETFGA  L    +  GG G  GR N
Sbjct:  260 YQKSSFFDTISCDALDRLEGQRARMSGAEERKLNTETFGAVGLNNRRNFRGGRGRGGRRN 319
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: A0A1V9Y4S2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4S2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.790e-5
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    4 YKKSSFFDEISCDALDGRERGGG----YRERNLNAETFGATSLVYEDSGGGGNHG 156
            Y+KSSFFD ISCDALD  E   G    + ER LN ETFGA  L    +  GGN G
Sbjct:  257 YQKSSFFDTISCDALDRLEGVNGRMRAHEERKLNTETFGAVGLNNRRNYRGGNRG 311
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BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Match: D0NAR7_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NAR7_PHYIT)

HSP 1 Score: 50.1 bits (118), Expect = 5.860e-5
Identity = 27/43 (62.79%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    4 YKKSSFFDEISCDALDG----RERGGGYRERNLNAETFGATSL 120
            Y+KSSFFD ISCDALD     R R  G  ER LN ETFGA  L
Sbjct:   61 YQKSSFFDTISCDALDRLEGQRSRMSGAEERKLNTETFGAVGL 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10234.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836C876_9STRA2.450e-975.00Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
A0A6H5KDD7_9PHAE2.000e-669.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WC16_GLOUD1.580e-559.62Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D7FK17_ECTSI2.150e-568.29Novel Sm-like protein with long N-and C-terminal d... [more]
W4GVK0_9STRA2.360e-565.91Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A3F2RWG2_9STRA3.890e-555.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3R7GHF0_9STRA4.140e-555.00Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A1V9Y4S2_9STRA5.790e-554.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
D0NAR7_PHYIT5.860e-562.79Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10234contigP-wetherbeei_contig10234:1593..1997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog65071.PYU1_T002507
PFAMsLSM14
Model size405
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.59e-06
EggNOG OGsKOG1073@1|root,KOG1073@2759|Eukaryota,1MGUK@121069|Pythiales
DescriptionScd6-like Sm domain
Cds size405
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.38426-CDS-P-wetherbeei_contig10234:1592..19971683185860.38426-CDS-P-wetherbeei_contig10234:1592..1997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10234 1593..1997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10234.1.1prot_P-wetherbeei_contig10234.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10234 1593..1997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10234.1.1

>prot_P-wetherbeei_contig10234.1.1 ID=prot_P-wetherbeei_contig10234.1.1|Name=mRNA_P-wetherbeei_contig10234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
KYKKSSFFDEISCDALDGRERGGGYRERNLNAETFGATSLVYEDSGGGGN
HGRYNGGGRGGGRGGGRYGGGGGGRYGNRGGGDRYNNGGGGGRYGGDRGG
ERGGDRYGGARDRYSNGGGGGGGGNSGGNWRDRS*
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mRNA from alignment at P-wetherbeei_contig10234:1593..1997-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10234.1.1 ID=mRNA_P-wetherbeei_contig10234.1.1|Name=mRNA_P-wetherbeei_contig10234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig10234:1593..1997- (Phaeothamnion wetherbeei SAG_119_79)
AAGTACAAAAAATCGTCTTTCTTCGACGAGATTTCGTGCGACGCCCTGGA
CGGCCGGGAGCGTGGCGGTGGTTACCGGGAGCGCAACCTGAACGCGGAGA
CCTTCGGCGCGACGAGCCTGGTGTACGAAGACAGCGGGGGTGGCGGCAAC
CACGGCCGTTACAACGGCGGCGGCCGCGGCGGTGGCCGCGGCGGCGGCAG
GTACGGGGGAGGTGGCGGCGGCCGCTATGGCAACCGGGGCGGGGGTGATC
GTTACAACAACGGCGGCGGCGGCGGCCGTTACGGCGGTGACCGCGGCGGC
GAGCGTGGCGGCGACCGCTACGGCGGCGCCAGGGACCGTTACAGCAACGG
CGGCGGCGGCGGCGGAGGCGGCAACAGCGGCGGGAATTGGCGTGATAGGT
CTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10234:1593..1997-

>mRNA_P-wetherbeei_contig10234.1.1 ID=mRNA_P-wetherbeei_contig10234.1.1|Name=mRNA_P-wetherbeei_contig10234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig10234:1593..1997- (Phaeothamnion wetherbeei SAG_119_79)
AAGTACAAAAAATCGTCTTTCTTCGACGAGATTTCGTGCGACGCCCTGGA
CGGCCGGGAGCGTGGCGGTGGTTACCGGGAGCGCAACCTGAACGCGGAGA
CCTTCGGCGCGACGAGCCTGGTGTACGAAGACAGCGGGGGTGGCGGCAAC
CACGGCCGTTACAACGGCGGCGGCCGCGGCGGTGGCCGCGGCGGCGGCAG
GTACGGGGGAGGTGGCGGCGGCCGCTATGGCAACCGGGGCGGGGGTGATC
GTTACAACAACGGCGGCGGCGGCGGCCGTTACGGCGGTGACCGCGGCGGC
GAGCGTGGCGGCGACCGCTACGGCGGCGCCAGGGACCGTTACAGCAACGG
CGGCGGCGGCGGCGGAGGCGGCAACAGCGGCGGGAATTGGCGTGATAGGT
CTTGA
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