mRNA_P-wetherbeei_contig10232.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10232.1.1
Unique NamemRNA_P-wetherbeei_contig10232.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A1Q4DF65_9HYPH (Peptidase C51 domain-containing protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DF65_9HYPH)

HSP 1 Score: 160 bits (405), Expect = 1.240e-47
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    7 LEALKWMGASSRQVGVPYPDLWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPSD 351
            LEAL+W G +++Q+GVP   LWCADF+NF+L+R G   T SRAA+SFL YGK +D PRVGAI +L RG NNGHVG+VRGTDG GN I+ISGNHG  V +S YPK RVLGYV+P D
Sbjct:   71 LEALRWRGHTAKQIGVP-SQLWCADFMNFVLKRAGGKGTGSRAARSFLKYGKLLDGPRVGAIAILYRGPNNGHVGVVRGTDGQGNPILISGNHGPTVMQSTYPKERVLGYVMPPD 184          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A346A3F6_9HYPH (TIGR02594 family protein n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A3F6_9HYPH)

HSP 1 Score: 152 bits (384), Expect = 6.460e-44
Identity = 70/116 (60.34%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 LEALKWMGASSRQVGVPYPDLWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTR-GVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPSD 351
            LEAL+W G +++Q+G+P   LWCADF+NF+ ++ G   T+SRAA+SFL YGK++D PRVGAI ++ R G NNGHVG+VRGTDG GN IV+SGNHG  V++S+YPK++VL YV+P D
Sbjct:  112 LEALRWRGRTAKQLGLP-TQLWCADFMNFVFKKAGAKGTSSRAARSFLQYGKKLDGPRVGAIAIMWRKGPNNGHVGVVRGTDGQGNPIVVSGNHGPTVTQSVYPKHKVLAYVMPPD 226          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A371BBT8_9HYPH (TIGR02594 family protein n=3 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371BBT8_9HYPH)

HSP 1 Score: 145 bits (366), Expect = 1.070e-41
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    7 LEALKWMGASSRQVGVPYPDLWCADFVNFILRRTG-HVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRG-VNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPSD 351
            LEAL++ GA+++Q+G+P   LWCADF+NF++++ G +  T SRAA+SFL++GK++D PRVGAI +L RG   NGHVGIVRGTDG GN I+ISGN GN V +S YPK +VLGYV+P D
Sbjct:   67 LEALRYRGANAKQLGLP-AQLWCADFMNFVIKKAGGNKGTQSRAARSFLEFGKKLDGPRVGAIAILKRGGPQNGHVGIVRGTDGQGNPILISGNSGNMVRQSSYPKEKVLGYVMPPD 182          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A0Q7TXP6_9HYPH (Peptidase C51 domain-containing protein n=2 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TXP6_9HYPH)

HSP 1 Score: 144 bits (363), Expect = 2.210e-41
Identity = 67/116 (57.76%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    7 LEALKWMGASSRQVGVPYPDLWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRG-VNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPSD 351
            LEAL++ GA+++Q+G+P   LWCADF+N+++++ G   T+SRAA+SFL++G+++D PRVGAI +L RG   NGHVG+VRGTDG GN I+ISGN GN V +S YPK +VL YV+P D
Sbjct:   56 LEALRYRGANAKQLGLP-AQLWCADFMNYVIKKAGAKGTHSRAARSFLEFGRKLDGPRVGAIAILRRGGPQNGHVGVVRGTDGQGNPILISGNSGNMVRQSAYPKEKVLAYVMPPD 170          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A371B7E6_9HYPH (TIGR02594 family protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B7E6_9HYPH)

HSP 1 Score: 129 bits (324), Expect = 3.300e-34
Identity = 61/114 (53.51%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   10 EALKWMGASSRQVGVPYPDLWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPSD 351
            EA K+MG +          LWCA F+N +L + G+  TNS AA+SF  YG+RI+ PR+GAI VLTRG N GHVG+V G D +GN I+ISGNHG +V E++YP++RV+ YV+PS+
Sbjct:   81 EARKYMGTNPTA----RDRLWCATFMNMVLAKVGYSGTNSDAARSFAQYGRRINEPRIGAIAVLTRGKNGGHVGVVSGIDPSGNPIIISGNHGRKVGEAIYPRSRVIAYVMPSE 190          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A257KF51_9BRAD (Amidase n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A257KF51_9BRAD)

HSP 1 Score: 120 bits (301), Expect = 9.670e-32
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   67 LWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPS 348
            LWCA F+N +L+RTGH  T S  A+SF  YG RI  P+VGAI V++RG   GHVG+V G D  GN I++SGNHGNRV+ES Y K R+  YV+PS
Sbjct:  121 LWCAAFMNLVLKRTGHQGTGSDMARSFSSYGHRISGPQVGAIAVMSRGRRGGHVGVVSGVDAKGNPIIVSGNHGNRVAESTYSKGRIYAYVMPS 214          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A164ARB0_9BRAD (Amidase n=5 Tax=Tardiphaga TaxID=1395974 RepID=A0A164ARB0_9BRAD)

HSP 1 Score: 120 bits (300), Expect = 1.330e-31
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   67 LWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPS 348
            LWCA F+N +L+RTGH  T S  A+SF  YG+RI  P+VGAI V++RG   GHVG+V G D  GN I++SGNHGNRV+ES+Y + RV  YV+P+
Sbjct:  120 LWCAAFMNLVLKRTGHQGTGSDMARSFSSYGQRISGPQVGAIAVMSRGRRGGHVGVVSGVDAKGNPIIVSGNHGNRVAESVYSRGRVYAYVMPT 213          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A515KH95_9BRAD (TIGR02594 family protein n=1 Tax=Tardiphaga sp. vice352 TaxID=2592816 RepID=A0A515KH95_9BRAD)

HSP 1 Score: 119 bits (299), Expect = 1.410e-31
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   10 EALKWMGASSRQVGVPYPDLWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPS 348
            EA +++G +    G     LWCA F+N +L+R+GH  T S  A+SF  YG+RI  P+VGAI V++RG   GHVG+V G D +GN I++SGNHGNRV+ES+Y + R+  YV+P+
Sbjct:   94 EARRYIGGNPTGRG----RLWCARFMNMVLQRSGHQGTGSDMARSFSSYGQRISGPQVGAIAVMSRGRRGGHVGVVSGIDASGNPIIVSGNHGNRVAESVYSRGRIYAYVMPT 202          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A7G6U2V3_9BRAD (TIGR02594 family protein n=1 Tax=Tardiphaga robiniae TaxID=943830 RepID=A0A7G6U2V3_9BRAD)

HSP 1 Score: 120 bits (300), Expect = 1.810e-31
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   67 LWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPS 348
            LWCA F+N +L+RTGH  T S  A+SF  YG+RI  P+VGAI V++RG   GHVG+V G D  GN I++SGNHGNRV+ES+Y + RV  YV+P+
Sbjct:  132 LWCAAFMNLVLKRTGHQGTGSDMARSFSSYGQRISGPQVGAIAVMSRGRRGGHVGVVSGVDAKGNPIIVSGNHGNRVAESVYSRGRVYAYVMPT 225          
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Match: A0A1Q3W0Y0_9BRAD (Amidase n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3W0Y0_9BRAD)

HSP 1 Score: 119 bits (297), Expect = 3.970e-31
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   67 LWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDSPRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNRVLGYVIPS 348
            LWCA F+N +L+RTGH  T S  A+SF  YG+RI  P+VGAI V++RG   GHVG+V G D  GN IVISGNHG RV+ES+Y + R+  YV+PS
Sbjct:  122 LWCARFMNMVLQRTGHQGTGSDMARSFASYGQRISGPQVGAIAVMSRGRRGGHVGVVSGIDAKGNPIVISGNHGRRVAESVYSRGRIYAYVMPS 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4DF65_9HYPH1.240e-4766.09Peptidase C51 domain-containing protein n=1 Tax=Rh... [more]
A0A346A3F6_9HYPH6.460e-4460.34TIGR02594 family protein n=2 Tax=Pseudolabrys taiw... [more]
A0A371BBT8_9HYPH1.070e-4160.68TIGR02594 family protein n=3 Tax=unclassified Pseu... [more]
A0A0Q7TXP6_9HYPH2.210e-4157.76Peptidase C51 domain-containing protein n=2 Tax=Ps... [more]
A0A371B7E6_9HYPH3.300e-3453.51TIGR02594 family protein n=1 Tax=Pseudolabrys sp. ... [more]
A0A257KF51_9BRAD9.670e-3258.51Amidase n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepI... [more]
A0A164ARB0_9BRAD1.330e-3157.45Amidase n=5 Tax=Tardiphaga TaxID=1395974 RepID=A0A... [more]
A0A515KH95_9BRAD1.410e-3149.56TIGR02594 family protein n=1 Tax=Tardiphaga sp. vi... [more]
A0A7G6U2V3_9BRAD1.810e-3157.45TIGR02594 family protein n=1 Tax=Tardiphaga robini... [more]
A0A1Q3W0Y0_9BRAD3.970e-3158.51Amidase n=1 Tax=Afipia sp. 64-13 TaxID=1895701 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10232contigP-wetherbeei_contig10232:83..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog504832.OCAR_5605
PFAMsCHAP
Model size360
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.72e-32
EggNOG OGsCOG3409@1|root,COG3409@2|Bacteria,1R4RS@1224|Proteobacteria,2U0FF@28211|Alphaproteobacteria,3JYB3@41294|Bradyrhizobiaceae
DescriptionCHAP domain
Cds size336
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.320922-UTR-P-wetherbeei_contig10232:82..1061683185860.320922-UTR-P-wetherbeei_contig10232:82..106Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10232 83..106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.3312352-CDS-P-wetherbeei_contig10232:106..4421683185860.3312352-CDS-P-wetherbeei_contig10232:106..442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10232 107..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10232.1.1prot_P-wetherbeei_contig10232.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10232 107..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10232.1.1

>prot_P-wetherbeei_contig10232.1.1 ID=prot_P-wetherbeei_contig10232.1.1|Name=mRNA_P-wetherbeei_contig10232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MGASSRQVGVPYPDLWCADFVNFILRRTGHVTTNSRAAKSFLDYGKRIDS
PRVGAIVVLTRGVNNGHVGIVRGTDGAGNIIVISGNHGNRVSESMYPKNR
VLGYVIPSDAN*
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mRNA from alignment at P-wetherbeei_contig10232:83..442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10232.1.1 ID=mRNA_P-wetherbeei_contig10232.1.1|Name=mRNA_P-wetherbeei_contig10232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig10232:83..442+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGGGCTTGAGGCGTTGAAGTGGATGGGTGCGAGCTCCCGCCAGGTGGG CGTTCCCTATCCGGATCTCTGGTGCGCCGATTTCGTCAACTTCATCCTGC GCCGCACCGGCCACGTCACCACCAATTCTCGTGCGGCCAAGTCGTTCCTC GACTACGGCAAGCGCATCGACAGCCCCCGCGTTGGCGCCATCGTCGTGCT GACGCGCGGCGTCAACAACGGCCACGTCGGCATCGTGCGCGGCACCGACG GCGCCGGCAACATCATCGTCATCTCGGGCAATCACGGAAACCGGGTTTCC GAGAGCATGTATCCCAAGAACCGCGTGCTCGGCTACGTCATCCCGTCCGA CGCGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10232:83..442+

>mRNA_P-wetherbeei_contig10232.1.1 ID=mRNA_P-wetherbeei_contig10232.1.1|Name=mRNA_P-wetherbeei_contig10232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig10232:83..442+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGCGAGCTCCCGCCAGGTGGGCGTTCCCTATCCGGATCTCTGGTG
CGCCGATTTCGTCAACTTCATCCTGCGCCGCACCGGCCACGTCACCACCA
ATTCTCGTGCGGCCAAGTCGTTCCTCGACTACGGCAAGCGCATCGACAGC
CCCCGCGTTGGCGCCATCGTCGTGCTGACGCGCGGCGTCAACAACGGCCA
CGTCGGCATCGTGCGCGGCACCGACGGCGCCGGCAACATCATCGTCATCT
CGGGCAATCACGGAAACCGGGTTTCCGAGAGCATGTATCCCAAGAACCGC
GTGCTCGGCTACGTCATCCCGTCCGACGCGAACTGA
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