mRNA_P-wetherbeei_contig1023.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1023.2.1
Unique NamemRNA_P-wetherbeei_contig1023.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1023.2.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.220e-13
Identity = 77/231 (33.33%), Postives = 106/231 (45.89%), Query Frame = 2 
Query:  137 SVNVEWRPSSIGDLVGEPHAEKAALRELVRNGAVPTPAAAK-TGTVVAGGAAAARPWAREEARFSMVERRTRQLATRAMHSPSLQALIGRMELFLTWFLRQSAAAWDTSSSAPMEVPSHVTEAWLTETEKDAAALALDAPRCTMGGDLRLALPDSSFQRLLLHALCQFYGLRSKSTRDAPAGGASATCAVLV-------RRPLSPTPALADLSMVGFLLATRVGQTPAARL 805
            S++V WR SS+GDLV +     A LR   R GA P PA +  +G     G      W   E RF+ + +R R + T+++H  +L+A +  +E  L +F+        T+ + P   P  + EA  T  +  A            G  L +AL DS F RLLLHA CQ++GL SKS  DA  GG       L                    +SM  F+ ATRV Q+ A RL
Sbjct:  126 SLDVSWR-SSLGDLVAD--EVDAPLRTAARQGAAPAPALSHGSGHQQYRGT----HWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFI--------TARALPPTTPDPLAEALRTPLQLQAGPKG--------GARLGVALHDSPFHRLLLHAACQYHGLLSKS--DAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRL 331
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BLAST of mRNA_P-wetherbeei_contig1023.2.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.060e-12
Identity = 82/236 (34.75%), Postives = 108/236 (45.76%), Query Frame = 2 
Query:   14 AALFQSAALRRANP------GRRKLRRWRLDDY-----HLERLDEDELHDFESVNVE--WRPSSIGDLVGEPHAEKAALRELVRNGAVPTPAAAKTGTVVAGGAA--AARPWAREEARFSMVERRTRQLATRAMHSPSLQALIGRMELFLTWF------LRQSAAAWDTSSSAPMEVPSHVTEAWLTETEKDAAALALDAPRCTMGGDLRLALPDSSFQRLLLHALCQFYGLRSKS 658
            A + QS+A RR         GRRK RRW  D+       L      E  + E + V+  WR SS+GDLV +P A  A +RE  RNG  PTP   K G+    GA       W   E RF +VERR R +  RA+ +P+L   +  +E  L  F      L +  +A  ++ ++P +V          E  K              G  L + L  S F RLLLHALCQ+  LRSKS
Sbjct:  128 APVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWR-SSLGDLVSDPRA--AEVRESFRNGMQPTPQ--KGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKV----------EVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKS 348
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BLAST of mRNA_P-wetherbeei_contig1023.2.1 vs. uniprot
Match: A0A024GEX0_9STRA (R3H domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GEX0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.560e-5
Identity = 62/223 (27.80%), Postives = 104/223 (46.64%), Query Frame = 2 
Query:   17 ALFQSAALRRANPGRRKLRRWRLDDYHLERLDE-----DELHDFESVNVEWRPSSIGDLVGEPHAEKAALRELVRNGAVPTPAA-AKTGTVVAGGAAAARPWAREEARFSMVERRTRQLATRAMHSPSLQALIGRMELFLTWFLRQSAAAWDTSSSAPMEVPSHVTEAWLTETEKDAAALALDAPRCTMGGDLRLALPDSSFQRLLLHALCQFYGLRSKSTRD 667
            AL    ++ +A  G+R  +RW  +DYH+E  +      +EL     + V WR S+   L  +   + A L   V    + T     KTG            W   E  F  ++RR R L ++++ S    + +  ME  +  F++   A  D      +E+   + +  ++  E   +A ++ +        LRL+LP+S F RLL+HALCQFYGL+SK+ ++
Sbjct:   54 ALPYILSMNQAPSGKRNQKRW-ANDYHIENSEMLGNNVEELMQHLHIQVNWR-SNFQQLAKDRALQDAFLEAKVHPKPISTNCRNKKTGY-----------WNEAEYMFRRMDRRARALLSKSIIS--FGSFLEAMEHTILHFVKWREAPSD------LELMPALRKMLISPLEITESAFSVRS--------LRLSLPNSPFHRLLVHALCQFYGLQSKTEQN 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1023.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZHM7_9STRA2.220e-1333.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FP96_ECTSI1.060e-1234.75R3H domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A024GEX0_9STRA2.560e-527.80R3H domain-containing protein n=2 Tax=Albugo candi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1023contigP-wetherbeei_contig1023:870..2984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1318
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSingle-stranded nucleic acid binding R3H
Ec32 orthologEc-08_000270.1
Cds size696
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1023.2.1prot_P-wetherbeei_contig1023.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1023 1420..2690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.1514618-UTR-P-wetherbeei_contig1023:869..9471683185860.1514618-UTR-P-wetherbeei_contig1023:869..947Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1023 870..947 +
1683185860.1627328-UTR-P-wetherbeei_contig1023:1169..14191683185860.1627328-UTR-P-wetherbeei_contig1023:1169..1419Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1023 1170..1419 +
1683185860.2026331-UTR-P-wetherbeei_contig1023:2690..29841683185860.2026331-UTR-P-wetherbeei_contig1023:2690..2984Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1023 2691..2984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.1749663-CDS-P-wetherbeei_contig1023:1419..15271683185860.1749663-CDS-P-wetherbeei_contig1023:1419..1527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1023 1420..1527 +
1683185860.18385-CDS-P-wetherbeei_contig1023:1790..20101683185860.18385-CDS-P-wetherbeei_contig1023:1790..2010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1023 1791..2010 +
1683185860.1933944-CDS-P-wetherbeei_contig1023:2322..26901683185860.1933944-CDS-P-wetherbeei_contig1023:2322..2690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1023 2323..2690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1023.2.1

>prot_P-wetherbeei_contig1023.2.1 ID=prot_P-wetherbeei_contig1023.2.1|Name=mRNA_P-wetherbeei_contig1023.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
MVERRTRQLATRAMHSPSLQALIGRMELFLTWFLRQSAAAWDTSSSAPME
VPSHVTEAWLTETEKDAAALALDAPRCTMGGDLRLALPDSSFQRLLLHAL
CQFYGLRSKSTRDAPAGGASATCAVLVRRPLSPTPALADLSMVGFLLATR
VGQTPAARLLAEAAAVGAVFAHEGLAAARTKRAGRAAAAEAVPAGTAGAV
AHALRPTAVQRRSPRSASPRSEWVLVGSVAA*
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mRNA from alignment at P-wetherbeei_contig1023:870..2984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1023.2.1 ID=mRNA_P-wetherbeei_contig1023.2.1|Name=mRNA_P-wetherbeei_contig1023.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2115bp|location=Sequence derived from alignment at P-wetherbeei_contig1023:870..2984+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCCGCTCCACGCGGCCCTCTTCCAAAGTGCGGCTCTCCGGCGCGCCA
ACCCCGGCCGCCGAAAGCTCCGCCGCTGGTGAATGAAAAATTGTGGGCCT
TGGGGAGACGAGGATGATAGCATTTCCGACCTCTCTCTTTTCATAAAGGC
ACTGAGACGGCCAACTGCGATATATAAGGTGTTTTCCGATTGCCTTGCTG
AACAAAGAGGATCTTCACATGATGGACCAAGCGGTCTCATTCCCTCCTTT
CACTCTTTCAAATCGCCTTCGCCGCTGCTGCTGCCGCCGTCACAAAGCAG
GCGGCTGGATGACTACCACCTGGAGCGCCTCGACGAGGACGAGCTACACG
ATTTCGAGAGCGTAAACGTCGAGTGGCGACCCTCCTCCATCGGCGATCTC
GTCGGCGAGCCGCACGCGGAAAAGGCCGCCCTCCGGGAGCTGGTCCGGAA
CGGCGCCGTGCCAACGCCGGCGGCGGCGAAGACCGGCACAGTGGTGGCAG
GCGGGGCGGCTGCGGCGCGGCCATGGGCGCGGGAGGAGGCACGGTTCTCG
ATGGTCGAGCGGCGGACGCGGCAGCTGGCGACGCGGGCAATGCACAGCCC
ATCGCTGCAGGCGCTCATCGGCAGGATGGAGCTCTTTCTGACGTGGTTCC
TGCGGCAGGCGAGTCATTCCGGCGGGCGCAGGGAAGAGGATTCAATATTG
CCTTTTTCAAGAACGGAATTTTGCGTGGCCTGCCATGAAGATGAAGAAGG
GCAGTGCATTTTATCCTTTTTCTTGTTTTGTGTATCCTCTTTCATTTGGC
ATTTGTTGGTACCTCTCTGACCTCTTTCTCTCAAGAGGCTCCACCTCGCA
GTTTAATTTCCTGTTTCTTAGCCATAGCGACGCGCCGCTCTCTTTCTCCA
CGTCATTCCGTTCCCCGGCAGAGCGCCGCTGCATGGGACACATCCTCGTC
GGCACCGATGGAGGTCCCGTCGCACGTGACAGAGGCGTGGCTGACGGAGA
CAGAGAAGGATGCGGCGGCTTTGGCGCTAGACGCACCGCGCTGCACGATG
GGGGGTGACCTGCGGCTGGCGCTACCTGACAGCTCATTCCAGCGGCTGCT
GCTCCACGCGCTCTGCCAGTTCTACGGCCTGCGCTCCAAGAGTGCGCCGT
TCCGCCCGTTCGCCCGTTCTGCGCCAGTTTTCGAGCGCTCCTGCTGTCTT
GCTGACATCGTCTTTGGTACCTGCGGTTTATTTCCCCTTCGATCACGTTA
TTAGCTTACCATCCTTGTACCTTTTCTACCTATTGTGTTGGCGGCGGTGC
TCGTGTCTATGCTGCTCCTTTTTCTCTTTCGTTTCACAACGCCGATCGAG
CTCTTAGAAACTCTCTTTCGCCTCCCAGTTATTCGGATCACGCTGCTTGT
GTGTTTCCGTCTTTCCCTCTGCTTATCGAAACCTAAATGTGTGACGCCGC
CAGGCACCAGGGATGCCCCGGCCGGCGGCGCGTCCGCTACCTGCGCCGTA
CTGGTTCGGCGGCCGCTCTCGCCGACACCTGCCCTGGCCGATCTGTCCAT
GGTCGGCTTTCTCCTGGCGACGCGTGTGGGGCAGACGCCCGCGGCGCGGC
TGCTGGCGGAGGCTGCCGCCGTGGGGGCAGTCTTCGCGCACGAGGGGCTG
GCGGCGGCCCGGACGAAGCGGGCGGGGCGGGCGGCGGCAGCAGAGGCGGT
GCCGGCGGGGACTGCGGGGGCGGTGGCGCACGCGCTGCGTCCAACGGCCG
TGCAGCGCCGCTCGCCGCGGTCGGCGTCGCCGCGGTCCGAGTGGGTCCTG
GTGGGCAGCGTGGCGGCGTGAGGCGTTCCATTGTGGTGGTTGTAGAGGTT
GGTTGCGGATCCGATCCTGCAGATGGTTGGGCTGCTGGCTGTTTCTCGGC
TGCTGCAGATTCGGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTG
GAGGGGGTGGTGGCGGTGGCAACGGCGGCTGAAGCTGGCTTGATTTGCTG
CTGTTGGCGGGCGGACAGAAATGCCTGCGTGGGGACGGAAGCCGGGCTTG
CTGTCTTGCTTCAAGCTGTGCCGTGGCGCCCGCACCGCGGTGTAAATAGG
TAATCTGAAGTGCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1023:870..2984+

>mRNA_P-wetherbeei_contig1023.2.1 ID=mRNA_P-wetherbeei_contig1023.2.1|Name=mRNA_P-wetherbeei_contig1023.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig1023:870..2984+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGAGCGGCGGACGCGGCAGCTGGCGACGCGGGCAATGCACAGCCC
ATCGCTGCAGGCGCTCATCGGCAGGATGGAGCTCTTTCTGACGTGGTTCC
TGCGGCAGAGCGCCGCTGCATGGGACACATCCTCGTCGGCACCGATGGAG
GTCCCGTCGCACGTGACAGAGGCGTGGCTGACGGAGACAGAGAAGGATGC
GGCGGCTTTGGCGCTAGACGCACCGCGCTGCACGATGGGGGGTGACCTGC
GGCTGGCGCTACCTGACAGCTCATTCCAGCGGCTGCTGCTCCACGCGCTC
TGCCAGTTCTACGGCCTGCGCTCCAAGAGCACCAGGGATGCCCCGGCCGG
CGGCGCGTCCGCTACCTGCGCCGTACTGGTTCGGCGGCCGCTCTCGCCGA
CACCTGCCCTGGCCGATCTGTCCATGGTCGGCTTTCTCCTGGCGACGCGT
GTGGGGCAGACGCCCGCGGCGCGGCTGCTGGCGGAGGCTGCCGCCGTGGG
GGCAGTCTTCGCGCACGAGGGGCTGGCGGCGGCCCGGACGAAGCGGGCGG
GGCGGGCGGCGGCAGCAGAGGCGGTGCCGGCGGGGACTGCGGGGGCGGTG
GCGCACGCGCTGCGTCCAACGGCCGTGCAGCGCCGCTCGCCGCGGTCGGC
GTCGCCGCGGTCCGAGTGGGTCCTGGTGGGCAGCGTGGCGGCGTGA
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