mRNA_P-wetherbeei_contig10227.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10227.1.1
Unique NamemRNA_P-wetherbeei_contig10227.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10227.1.1 vs. uniprot
Match: A0A812KAG6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KAG6_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 8.230e-12
Identity = 66/177 (37.29%), Postives = 90/177 (50.85%), Query Frame = 1 
Query:  124 AVARERRVLERVLATGLVPEDDIGACVEAVLAPRHMAENTDLLTGQYRERAARLSERLRATLERKSFERQAVLDALMEKQGGGDEARVAALTAVEARFAAELREVEAAVIGQLEPEHSKQQLALRQRQLREIVTTTRAAAPGEESWRRLQRLEIERQAAELAEYQRQVEADKEARIA 654
            A ARE+  L  VLA G +  D     +EAVL  RH  E  +LL  QY ER     E+     E       AV D  +  QG  DE   AA  A+   F  ++   EA +  +L  +HS +++ LRQRQL E+     + AP +   R   + E E +A ELA +QR++EA KEAR+A
Sbjct: 2004 AAAREKEALAAVLADGSIGPDRKADAIEAVLGERHTRETAELLAAQYAERQTLYEEKRGDIAE-------AVSD--LRAQGASDEDIHAAEAAISDAFTQKIAAAEAELDAELSGKHSGEKIELRQRQLAEVSDAFSSLAPEDILRRHEMQAEAE-EAEELASFQREMEAQKEARLA 2170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10227.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812KAG6_9DINO8.230e-1237.29Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10227contigP-wetherbeei_contig10227:2..1089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR26
PFAMsDUF3338,Ephrin_rec_like,FERM_C,FERM_M,FERM_N,Myosin_N,Myosin_head,Myosin_tail_1
Model size716
Max annot lvl2759|Eukaryota
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.72e-21
EggNOG OGsCOG5022@1|root,KOG1217@1|root,KOG3529@1|root,KOG0161@2759|Eukaryota,KOG1217@2759|Eukaryota,KOG3529@2759|Eukaryota
Descriptionactin binding
Cds size714
COG categoryO
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.0318646-CDS-P-wetherbeei_contig10227:1..4421683185860.0318646-CDS-P-wetherbeei_contig10227:1..442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10227 2..442 +
1683185860.0410037-CDS-P-wetherbeei_contig10227:814..10871683185860.0410037-CDS-P-wetherbeei_contig10227:814..1087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10227 815..1087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10227.1.1prot_P-wetherbeei_contig10227.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10227 2..1087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10227.1.1

>prot_P-wetherbeei_contig10227.1.1 ID=prot_P-wetherbeei_contig10227.1.1|Name=mRNA_P-wetherbeei_contig10227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
AAGFGFNGGEALAWEEAVRVAMEEEEAAGGGAFGVAGAGAPAVARERRVL
ERVLATGLVPEDDIGACVEAVLAPRHMAENTDLLTGQYRERAARLSERLR
ATLERKSFERQAVLDALMEKQGGGDEARVAALTAVEARFAAELREVEAAV
IGQLEPEHSKQQLALRQRQLREIVTTTRAAAPGEESWRRLQRLEIERQAA
ELAEYQRQVEADKEARIAAAEAERRQFEADLKRRHAAE
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mRNA from alignment at P-wetherbeei_contig10227:2..1089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10227.1.1 ID=mRNA_P-wetherbeei_contig10227.1.1|Name=mRNA_P-wetherbeei_contig10227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1088bp|location=Sequence derived from alignment at P-wetherbeei_contig10227:2..1089+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGCTTTGGGTTTAACGGCGGGGAAGCTCTGGCGTGGGAGGAAGC
GGTGCGCGTGGCGATGGAGGAGGAGGAAGCAGCCGGAGGCGGGGCGTTCG
GCGTCGCCGGCGCTGGCGCGCCGGCGGTGGCGCGCGAACGGCGCGTGTTG
GAACGCGTGCTGGCGACGGGACTTGTGCCGGAGGACGACATCGGCGCCTG
CGTCGAGGCGGTGCTGGCGCCACGTCACATGGCCGAAAACACGGACCTGC
TGACGGGGCAGTACCGGGAGCGGGCGGCGCGGCTGTCGGAGCGGTTGCGG
GCGACGCTGGAGCGCAAGAGCTTCGAGCGGCAGGCGGTGCTCGACGCGCT
GATGGAGAAGCAAGGTGGCGGCGATGAAGCACGGGTGGCGGCGCTGACGG
CTGTTGAGGCACGCTTCGCCGCGGAGCTTCGGGAGGTGGAGGCGAGTAGG
AAACGGCCTTCATGCGCGAGGGGGCCTGCCTGTTCTTTTTCGCGAGCTTT
GCGCCTTTTCACGTACCTGTTTTACTGAGAAGGCCTGCTGCTAAGGTTGC
CGCTGCCATAAGTTTGCTTTGTCACGTGTCAAGCTTTGCATCCTTCAAGC
CGTAAAGGATGCCACGTTCCGGCCACGGTAGGGGTGTATCTGACTGCGCT
CCCTTCCGCCACGTTTCGACAACGCCTTTGCAATCCACTTTCGTTGCTCC
CCCGTATTCCGACCGATTGCGCCGCCACCCTTCTTGTTACACCAATTATT
CCTTTCTGGCTCACACGCAATCCGGCTCCCCCTGTCGCGAACGCAACGAC
AACGACAATGCAGGCGGCGGTGATCGGCCAGCTGGAGCCCGAGCACTCCA
AGCAGCAGCTGGCCCTCCGCCAGCGGCAGCTGCGCGAGATCGTCACCACC
ACCCGCGCCGCCGCGCCCGGCGAGGAGTCATGGCGCCGCCTGCAGCGCCT
CGAGATCGAGCGACAGGCCGCGGAGCTGGCCGAGTACCAACGGCAAGTGG
AGGCGGACAAGGAGGCGCGGATTGCCGCAGCCGAAGCGGAGCGGCGGCAG
TTCGAGGCGGACTTGAAGCGCCGCCACGCCGCCGAATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10227:2..1089+

>mRNA_P-wetherbeei_contig10227.1.1 ID=mRNA_P-wetherbeei_contig10227.1.1|Name=mRNA_P-wetherbeei_contig10227.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig10227:2..1089+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGCTTTGGGTTTAACGGCGGGGAAGCTCTGGCGTGGGAGGAAGC
GGTGCGCGTGGCGATGGAGGAGGAGGAAGCAGCCGGAGGCGGGGCGTTCG
GCGTCGCCGGCGCTGGCGCGCCGGCGGTGGCGCGCGAACGGCGCGTGTTG
GAACGCGTGCTGGCGACGGGACTTGTGCCGGAGGACGACATCGGCGCCTG
CGTCGAGGCGGTGCTGGCGCCACGTCACATGGCCGAAAACACGGACCTGC
TGACGGGGCAGTACCGGGAGCGGGCGGCGCGGCTGTCGGAGCGGTTGCGG
GCGACGCTGGAGCGCAAGAGCTTCGAGCGGCAGGCGGTGCTCGACGCGCT
GATGGAGAAGCAAGGTGGCGGCGATGAAGCACGGGTGGCGGCGCTGACGG
CTGTTGAGGCACGCTTCGCCGCGGAGCTTCGGGAGGTGGAGGCGGCGGTG
ATCGGCCAGCTGGAGCCCGAGCACTCCAAGCAGCAGCTGGCCCTCCGCCA
GCGGCAGCTGCGCGAGATCGTCACCACCACCCGCGCCGCCGCGCCCGGCG
AGGAGTCATGGCGCCGCCTGCAGCGCCTCGAGATCGAGCGACAGGCCGCG
GAGCTGGCCGAGTACCAACGGCAAGTGGAGGCGGACAAGGAGGCGCGGAT
TGCCGCAGCCGAAGCGGAGCGGCGGCAGTTCGAGGCGGACTTGAAGCGCC
GCCACGCCGCCGAA
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