mRNA_P-wetherbeei_contig10218.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10218.2.1
Unique NamemRNA_P-wetherbeei_contig10218.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: A0A7J5XW56_DISMA (Uncharacterized protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5XW56_DISMA)

HSP 1 Score: 67.8 bits (164), Expect = 4.020e-9
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  671 LLDWWTRVGRKEH----PEMFEVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLH 859
            +L WW     KEH    P + ++AC++L++PASS + ERDFS AG +VS +RS LKP TV+ +LFLH
Sbjct:   78 VLSWW-----KEHATRFPNVAQIACSILSIPASSAASERDFSTAGFVVSERRSQLKPGTVDDILFLH 139
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.430e-9
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 2 
Query:  656 LSLERLLDWWTRVGRKEHPEMFEVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGNHQAIPSYDHIPELKGDALAMAVPVRLRDP-KIFTQMAQLYAP 988
            LS E +L WW ++    +P +  VA  +   PAS+  LERDFS+AG +++  RS +    VEM++FLHGN   IP  + I +L   A    +P RL +P +   Q+  ++AP
Sbjct:  602 LSCEDVLKWW-KMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP--EDITKLTEAAARTKIPGRLANPVERLEQLDGVFAP 710
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 66.2 bits (160), Expect = 1.240e-8
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:  671 LLDWWTRVGRKEHPEMF----EVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGN 865
            LL+WW     KEH EMF     +A ++L++PA+S + ERDFS AG ++S +RS L P TV+ +LFLH N
Sbjct:  170 LLNWW-----KEHSEMFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: UPI00155F1BC6 (zinc finger BED domain-containing protein RICESLEEPER 1-like n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155F1BC6)

HSP 1 Score: 62.4 bits (150), Expect = 4.470e-8
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:  671 LLDWWTRVGRKEHPEMFEVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGN 865
            +L WW R  +  +P++  +A  +LA+PASS S ER+FS AG  +  +R+ LKPSTV+ +LFLH N
Sbjct:   71 VLGWW-RDQQLNYPKLSVLARGILAIPASSSSSERNFSAAGRAIEQRRTALKPSTVDAILFLHKN 134
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: UPI0010FB90E5 (zinc finger BED domain-containing protein 1-like isoform X2 n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB90E5)

HSP 1 Score: 63.9 bits (154), Expect = 1.950e-7
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  659 SLERLLDWWTRVGRKEHPEMFEVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGNHQAI 877
            S+E  L WW ++ +   P ++++ C + A+P +S + ER FS AG L++ KRS LKPS    +LF+H N + I
Sbjct:  250 SIEDPLQWWNKM-KLSLPNLYKLMCCIYAIPITSSASERAFSSAGLLITAKRSALKPSKSNKILFIHDNFKLI 321
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: UPI0010FB10B4 (zinc finger BED domain-containing protein 1-like n=2 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB10B4)

HSP 1 Score: 63.9 bits (154), Expect = 4.570e-7
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  659 SLERLLDWWTRVGRKEHPEMFEVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGNHQAI 877
            S+E  L WW ++ +   P ++++ C + A+P +S + ER FS AG L++ KRS LKPS    +LF+H N + I
Sbjct:  613 SIEDPLQWWNKM-KLSLPNLYKLMCCIYAIPITSSASERAFSSAGLLITAKRSALKPSKSNKILFIHDNFKLI 684
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: UPI001C08277B (zinc finger protein 618-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C08277B)

HSP 1 Score: 61.6 bits (148), Expect = 6.960e-7
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:  671 LLDWWTRVGRKEH----PEMFEVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGN 865
            +L WW     ++H    P + ++A ++LA+PASS + ERDFS AG ++  +RS LKPSTV+ +LFLH N
Sbjct:  199 VLSWW-----QDHACLFPYIAQIARSILAIPASSAASERDFSCAGYVIQERRSQLKPSTVDDVLFLHSN 262
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: A0A5A9NFX1_9TELE (Transposable element Hobo transposase n=4 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NFX1_9TELE)

HSP 1 Score: 63.2 bits (152), Expect = 7.420e-7
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:  671 LLDWWTRVGRKEHPEMF----EVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGN 865
            +L WW     ++H  +F    ++A ++LA+PASS + ERDFS AG ++  +RS LKPSTV+ +LFLH N
Sbjct:  543 ILSWW-----QDHAHLFPNIAQIARSILAIPASSAASERDFSCAGYVIQERRSQLKPSTVDDVLFLHSN 606
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: A0A5A9P9S9_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P9S9_9TELE)

HSP 1 Score: 58.9 bits (141), Expect = 3.230e-6
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:  671 LLDWWTRVGRKEHPEMF----EVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGN 865
            +L WW     K+H  +F    ++A ++LA+PASS + ER FS AG ++  +RS LK STV+ +LFLH N
Sbjct:  155 ILSWW-----KDHAHLFPNIAQIARSILAIPASSAASERGFSCAGYVIQERRSQLKQSTVDDVLFLHSN 218
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BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Match: A0A3N0Z2E3_ANAGA (Transposable element Hobo transposase n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0Z2E3_ANAGA)

HSP 1 Score: 60.5 bits (145), Expect = 3.970e-6
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 2 
Query:  671 LLDWWTRVGRKEHPEMF----EVACTLLAVPASSGSLERDFSDAGTLVSGKRSGLKPSTVEMLLFLHGN 865
            +L WW     ++H  +F    ++A ++ A+PASS + ERDFS AG ++  +RS LKPSTV+ +LFLH N
Sbjct:  365 ILSWW-----QDHAHLFPNIAQIARSIPAIPASSAASERDFSCAGYVIQERRSQLKPSTVDDVLFLHSN 428
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10218.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A7J5XW56_DISMA4.020e-950.75Uncharacterized protein n=1 Tax=Dissostichus mawso... [more]
A0A6H5JZ82_9PHAE9.430e-937.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI0019661A931.240e-849.28zinc finger BED domain-containing protein DAYSLEEP... [more]
UPI00155F1BC64.470e-847.69zinc finger BED domain-containing protein RICESLEE... [more]
UPI0010FB90E51.950e-739.73zinc finger BED domain-containing protein 1-like i... [more]
UPI0010FB10B44.570e-739.73zinc finger BED domain-containing protein 1-like n... [more]
UPI001C08277B6.960e-746.38zinc finger protein 618-like n=1 Tax=Alosa sapidis... [more]
A0A5A9NFX1_9TELE7.420e-746.38Transposable element Hobo transposase n=4 Tax=Trip... [more]
A0A5A9P9S9_9TELE3.230e-644.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Tr... [more]
A0A3N0Z2E3_ANAGA3.970e-644.93Transposable element Hobo transposase n=1 Tax=Anab... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10218contigP-wetherbeei_contig10218:650..2169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7029.ACYPI41223-PA
PFAMsDimer_Tnp_hAT,zf-BED
Model size1520
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.01e-07
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size1230
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.5563233-UTR-P-wetherbeei_contig10218:649..6801683185859.5563233-UTR-P-wetherbeei_contig10218:649..680Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10218 650..680 +
1683185859.5802386-UTR-P-wetherbeei_contig10218:1910..21691683185859.5802386-UTR-P-wetherbeei_contig10218:1910..2169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10218 1911..2169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.5689807-CDS-P-wetherbeei_contig10218:680..19101683185859.5689807-CDS-P-wetherbeei_contig10218:680..1910Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10218 681..1910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10218.2.1prot_P-wetherbeei_contig10218.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10218 681..1910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10218.2.1

>prot_P-wetherbeei_contig10218.2.1 ID=prot_P-wetherbeei_contig10218.2.1|Name=mRNA_P-wetherbeei_contig10218.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=410bp
MSIVCTHADLTLAARQAREKLFSALNERFFAPRYNHACVTDVPGTGSRSL
VFEMATFMHPDLSNLRYVDLLASTPDHAAVVKGRIRRGVLDLLTKEISGR
QARGKAAEAAAVAEIATAAAEVTSGAGGTAAGQKRRAGATIIDFYGGKSA
KAGTASTSRGLGLIGARVPDPAAAVPVRQLMEPRLAAEWKLCAYEQYAAT
AAAPKLTTLSLERLLDWWTRVGRKEHPEMFEVACTLLAVPASSGSLERDF
SDAGTLVSGKRSGLKPSTVEMLLFLHGNHQAIPSYDHIPELKGDALAMAV
PVRLRDPKIFTQMAQLYAPQPSKPTGYESDDGGFSSFGEDSDSDDEGKDC
SGCSEALAAEAVVVMAAGAGAAGAAAAAAAASASALWGGGGGAGVGGGGS
SGDFSRIPS*
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mRNA from alignment at P-wetherbeei_contig10218:650..2169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10218.2.1 ID=mRNA_P-wetherbeei_contig10218.2.1|Name=mRNA_P-wetherbeei_contig10218.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1520bp|location=Sequence derived from alignment at P-wetherbeei_contig10218:650..2169+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTACAAGCAGGTGGAGATTAACGATGTCATGTCGATCGTTTGCACGC
ACGCCGACCTCACTTTGGCGGCGCGGCAGGCGCGGGAAAAACTGTTTAGC
GCCTTGAATGAGCGATTTTTCGCACCGCGGTACAACCACGCGTGTGTCAC
GGATGTACCCGGGACCGGCAGCCGCAGTCTCGTCTTCGAGATGGCGACGT
TCATGCATCCGGATCTGTCGAACTTGCGTTACGTCGACCTGCTGGCGTCG
ACGCCAGACCATGCGGCCGTCGTGAAGGGGCGGATTCGGCGTGGGGTGCT
GGACCTCCTCACCAAAGAGATCAGCGGACGGCAAGCACGGGGGAAGGCAG
CGGAGGCGGCGGCAGTAGCGGAAATTGCGACTGCTGCTGCTGAGGTGACC
AGCGGGGCGGGTGGGACAGCAGCGGGCCAGAAGCGGCGCGCCGGAGCGAC
CATCATCGACTTCTACGGGGGAAAGAGCGCCAAGGCCGGCACGGCGTCGA
CGAGTCGCGGCCTCGGGCTGATTGGAGCGCGCGTGCCTGACCCGGCGGCG
GCAGTCCCGGTGCGGCAACTGATGGAGCCGCGCCTCGCTGCTGAATGGAA
GCTGTGTGCGTATGAGCAGTATGCAGCGACGGCTGCAGCGCCGAAGCTGA
CCACCCTGTCGCTGGAGAGGCTGCTGGACTGGTGGACTCGCGTGGGCCGC
AAGGAACATCCAGAGATGTTTGAGGTCGCGTGCACGCTGTTGGCGGTGCC
GGCATCGTCCGGCTCACTTGAGCGGGACTTCAGCGATGCAGGAACGCTTG
TCAGCGGCAAACGCTCCGGCCTCAAGCCTAGCACTGTGGAGATGTTGTTG
TTCCTGCATGGGAACCATCAAGCTATTCCATCATACGACCATATTCCGGA
ACTGAAGGGGGACGCTCTAGCAATGGCAGTCCCTGTGCGGCTGCGGGACC
CGAAGATCTTCACACAGATGGCGCAGCTCTACGCGCCGCAGCCGTCCAAG
CCGACAGGATATGAGTCGGATGACGGCGGCTTCAGCTCGTTCGGCGAGGA
TTCGGACAGCGATGATGAGGGTAAGGACTGCAGCGGTTGCAGCGAGGCGC
TAGCTGCCGAAGCAGTGGTGGTGATGGCGGCGGGGGCGGGGGCGGCAGGA
GCGGCCGCGGCTGCGGCTGCGGCATCGGCATCGGCGCTGTGGGGCGGCGG
CGGTGGGGCCGGCGTTGGCGGTGGCGGCAGCAGCGGTGACTTTAGTAGGA
TACCTAGTTAGCGGCTGACTATCGCTCGGATTTGCTGCCGCGGGCGGAAT
CGGTGGTGGAGGCATCGGGCTGCGCTAACTTCCGGCAGGAGAGGCCGAAG
AATTGGAAAAGGTGGCTCTCAAAAGACGTGAAGACTAGGGGAAAGGAGCC
TCAGGAGCGAGGCATGCGAAACCCACCAATGGTTGTCAGGCGGTAGCGCG
AGCAATGGTGCGCTTGACACGTTTCGATGCGAATCGCAGCCTTAGAGCGC
CATTCGGCGCCGTAAAACGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10218:650..2169+

>mRNA_P-wetherbeei_contig10218.2.1 ID=mRNA_P-wetherbeei_contig10218.2.1|Name=mRNA_P-wetherbeei_contig10218.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1230bp|location=Sequence derived from alignment at P-wetherbeei_contig10218:650..2169+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATCGTTTGCACGCACGCCGACCTCACTTTGGCGGCGCGGCAGGC
GCGGGAAAAACTGTTTAGCGCCTTGAATGAGCGATTTTTCGCACCGCGGT
ACAACCACGCGTGTGTCACGGATGTACCCGGGACCGGCAGCCGCAGTCTC
GTCTTCGAGATGGCGACGTTCATGCATCCGGATCTGTCGAACTTGCGTTA
CGTCGACCTGCTGGCGTCGACGCCAGACCATGCGGCCGTCGTGAAGGGGC
GGATTCGGCGTGGGGTGCTGGACCTCCTCACCAAAGAGATCAGCGGACGG
CAAGCACGGGGGAAGGCAGCGGAGGCGGCGGCAGTAGCGGAAATTGCGAC
TGCTGCTGCTGAGGTGACCAGCGGGGCGGGTGGGACAGCAGCGGGCCAGA
AGCGGCGCGCCGGAGCGACCATCATCGACTTCTACGGGGGAAAGAGCGCC
AAGGCCGGCACGGCGTCGACGAGTCGCGGCCTCGGGCTGATTGGAGCGCG
CGTGCCTGACCCGGCGGCGGCAGTCCCGGTGCGGCAACTGATGGAGCCGC
GCCTCGCTGCTGAATGGAAGCTGTGTGCGTATGAGCAGTATGCAGCGACG
GCTGCAGCGCCGAAGCTGACCACCCTGTCGCTGGAGAGGCTGCTGGACTG
GTGGACTCGCGTGGGCCGCAAGGAACATCCAGAGATGTTTGAGGTCGCGT
GCACGCTGTTGGCGGTGCCGGCATCGTCCGGCTCACTTGAGCGGGACTTC
AGCGATGCAGGAACGCTTGTCAGCGGCAAACGCTCCGGCCTCAAGCCTAG
CACTGTGGAGATGTTGTTGTTCCTGCATGGGAACCATCAAGCTATTCCAT
CATACGACCATATTCCGGAACTGAAGGGGGACGCTCTAGCAATGGCAGTC
CCTGTGCGGCTGCGGGACCCGAAGATCTTCACACAGATGGCGCAGCTCTA
CGCGCCGCAGCCGTCCAAGCCGACAGGATATGAGTCGGATGACGGCGGCT
TCAGCTCGTTCGGCGAGGATTCGGACAGCGATGATGAGGGTAAGGACTGC
AGCGGTTGCAGCGAGGCGCTAGCTGCCGAAGCAGTGGTGGTGATGGCGGC
GGGGGCGGGGGCGGCAGGAGCGGCCGCGGCTGCGGCTGCGGCATCGGCAT
CGGCGCTGTGGGGCGGCGGCGGTGGGGCCGGCGTTGGCGGTGGCGGCAGC
AGCGGTGACTTTAGTAGGATACCTAGTTAG
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