mRNA_P-wetherbeei_contig10217.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10217.1.2
Unique NamemRNA_P-wetherbeei_contig10217.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A6H5KT38_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT38_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 6.100e-39
Identity = 75/141 (53.19%), Postives = 96/141 (68.09%), Query Frame = 1
Query:   10 PKVHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGGALATLTTLDFGRRFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARWMDYKHTGRVALVDEDNLGSVWVEGE 432
            P++HAGFR A+ SV   L+ V+  A  G         WH+ +TGHSLGGALATL TLD  RR+P+A+VTMY+FG+PRVGN AFAEL+    G+SFRVVN  D+VARMPR  +    +DY+H GR  +V ED     W++GE
Sbjct:  945 PRIHAGFRRAYVSVNGTLSAVLGSAMEGKPED-----WHVYITGHSLGGALATLATLDHCRRYPEAKVTMYNFGSPRVGNKAFAELYDSFVGDSFRVVNNLDIVARMPRATMGGISLDYQHCGRTVMVAEDPEEPPWIQGE 1080          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: D8LR60_ECTSI (Lipase domain protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR60_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.850e-37
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  121 WHILVTGHSLGGALATLTTLDFGRRFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARWMDYKHTGRVALVDEDNLGSVWVEGE 432
            WH+ +TGHSLGGALATL TLD  RR+P+A+VTMY+FG+PRVGN AFAEL+    G+SFRVVN  D+VARMPR  +    +DY+H+GR  +V ED     W++GE
Sbjct:    8 WHVYITGHSLGGALATLATLDHRRRYPEAKVTMYNFGSPRVGNKAFAELYDSFVGDSFRVVNNLDVVARMPRATMGGISLDYQHSGRTVMVAEDPEEPPWIQGE 111          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A0G4EHV0_VITBC (C2 domain-containing protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EHV0_VITBC)

HSP 1 Score: 137 bits (344), Expect = 1.230e-34
Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 1
Query:   10 PKVHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGGALATLTTLDFGR---------RFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARW-MDYKHTGRVALVDEDNLGSVWVEGE 432
            P+VHAGF  A+ S+R  L ++I  A+GG      +G W +LVTGHSLGGALATL   D            R P  +V +Y++GAPRVGN AF E F+   G++FRVVN RD++AR+PRG  A  W +DY+H GR  LVDE    ++W+EGE
Sbjct:  836 PRVHAGFHQAYLSIRSRLHELIHEATGGQ-----AGEWEVLVTGHSLGGALATLCAYDMATHGPVSRGEARGPPGKVLLYNYGAPRVGNGAFVEKFNAKIGDAFRVVNSRDVIARLPRG--ATAWILDYEHVGRTVLVDEAGQTNLWIEGE 979          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A7S0LWE7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWE7_9CRYP)

HSP 1 Score: 110 bits (276), Expect = 2.440e-28
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  127 ILVTGHSLGGALATLTTLDFGRRFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARWMDYKHTGRVALVDEDNLGSVWVEGE 432
            +LVTGHSLG ALATL   D    FP A+VTMY++G+PRVGN AFA LF  +  ++FR+VN  DLVAR+PR RL    ++Y+H GR  LV       +WVEGE
Sbjct:    2 VLVTGHSLGAALATLCAADIAPLFPGARVTMYNYGSPRVGNRAFARLFDTLVPDAFRIVNDADLVARVPRTRL----LNYRHVGRTVLVSAQQGKRIWVEGE 99          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A4D9CRQ9_9STRA (Lipase_3 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRQ9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.640e-26
Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   13 KVHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGGALATLTTLDFGRRFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARWMDYKHTGRVALVDE 399
            +VHAGF+ A+ SVR  L  ++D A+ G   G     W IL+TGHSLGGALA+L   D   R+    ++MY+FG PR+GN+AFA  +   NG+S+R+VN+ D  AR PR  L     +Y+H G   L+++
Sbjct:  997 RVHAGFKEAYLSVRPRLLALLDAATQGALEGGRVEDWEILLTGHSLGGALASLCAHDLSSRYAGLSLSMYNFGTPRIGNSAFARAYEESNGDSYRLVNENDAFARFPRN-LHPTLFNYEHAGTTVLLNQ 1124          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A0G4FV41_9ALVE (C2 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FV41_9ALVE)

HSP 1 Score: 110 bits (274), Expect = 3.360e-25
Identity = 71/167 (42.51%), Postives = 100/167 (59.88%), Query Frame = 1
Query:   10 PKVHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGGALATLTTLDFG----RR--FPKAQ-------------------VTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARWM-DYKHTGRVALVDEDNLGSVWVEGE 432
            P+VHAGF+ A+ SVRE + ++I   +      A    W +LVTGHSLGGALATL +LD      RR  + KA                    V+MY+FG+PRVGN  FA+L++R   ++F+VVN +D+VAR+PRG  A+ W+ DY+H GR  ++      S++VEGE
Sbjct:  948 PRVHAGFQRAYLSVREVVNEIIRQLTP---TKAGERPWRVLVTGHSLGGALATLCSLDLQLHSHRRAVWEKAHGEXXXXXXXXXXXXXXXFSVSMYTFGSPRVGNGRFADLYNRNVWDAFKVVNNQDVVARLPRG--ASAWLLDYEHVGRTVVLGYRGQTSIFVEGE 1109          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A1X6NQT7_PORUM (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQT7_PORUM)

HSP 1 Score: 105 bits (261), Expect = 6.370e-25
Identity = 62/140 (44.29%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   10 PKVHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGGALATLTTLDFGRRFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARWMDYKHTGRVALVDEDNLGSVWVEG 429
            P VH GF   +ASVRE L   +   +GG G     G W +  TGHSLGGALATL   D   R P ++  + SFG P+VGN AF    + +   +FRVVN  D+VAR P G        Y+H GR  LV+    G++WVEG
Sbjct:   28 PLVHFGFLRGYASVREPLLAELSALTGGLG-----GDWEVYYTGHSLGGALATLAAADVRARHPASRAVLVSFGQPKVGNGAFRAAVNALLPAAFRVVNDVDIVARAPAG-------SYRHVGRTVLVNA--AGNLWVEG 153          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A4D9D2C1_9STRA (C2 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2C1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.990e-24
Identity = 67/147 (45.58%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   16 VHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGGALATLTTLDFGRRFPK----AQVTMYSFGAPRVGNTAFAELF-SRVNGESFRVVNKRDLVARMPRGR-LAARWMDYKHTGRVALVDEDNLGS--VWVEGE 432
            VHAGFR AF S+R  +   +   +          GW + V GHSLGGALA L   +  RR P      ++ +YSFGAPRVGNTAF + + +R+   +FR+VN  D+VARMPRG   +A  M+Y H GR  L+ E   G   VWVEGE
Sbjct:  377 VHAGFRRAFRSIRGGVVQALQFIA----PDLIVDGWTVDVCGHSLGGALACLMAYELDRRMPALSEGGRLHVYSFGAPRVGNTAFCDEYDARLKQVTFRIVNGLDIVARMPRGTGRSAVLMEYNHCGRTVLLTETEQGQFRVWVEGE 519          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A8J5XNB7_DIALT (C2 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNB7_DIALT)

HSP 1 Score: 103 bits (257), Expect = 6.230e-23
Identity = 63/145 (43.45%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   10 PKVHAGFRGAFASVREALADVIDIASGGDGNGASSGG-------WHILVTGHSLGGALATLTTLDFGRR-FPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRG-------RLAARWMDYKHTGRVALVDE 399
            P VH+GFR A+ASV   + ++I  A G       +         W +  TGHSLGGALATL  L+ G+   P A++ +Y++GAPRVGN     L      E+FR+VN +DLV RMPRG       R A   +DY+H GR  LVDE
Sbjct:  533 PFVHSGFRTAWASVAPRVFELIAGAIGARAYDPDARARVLRRPRWTLFCTGHSLGGALATLAALEIGQSALPLARIALYTYGAPRVGNADLCALIDAYVPEAFRIVNGQDLVTRMPRGAAAETLGRFAGGILDYRHPGRTVLVDE 677          
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Match: A0A7S0YX09_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YX09_9CRYP)

HSP 1 Score: 98.2 bits (243), Expect = 7.900e-23
Identity = 59/145 (40.69%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    7 MPKVHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGGALATLTTLDFGRRFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVNKRDLVARMPRGRLAARWMD---YKHTGRVALVDEDNLGSVWVEGE 432
            +P  H GF  A+ SVRE++  V+      D  G     + + +TGHSLGGALATL  +D   R P   VTMY+FG+P+VG+ AF   ++ +   SFRVVN  D+ AR+PR +          Y H GR  L   +     WVEGE
Sbjct:    3 VPHAHFGFASAYDSVRESIFRVLGAIIPPDEEG-----FEVFLTGHSLGGALATLCAVDVRTRMPHVSVTMYNFGSPKVGDEAFVLRYNSLVKNSFRVVNDADVFARLPRNKGIGSVPGLPYYYHVGRTVLTSTERP-KAWVEGE 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10217.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT38_9PHAE6.100e-3953.19C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LR60_ECTSI3.850e-3759.62Lipase domain protein, partial n=1 Tax=Ectocarpus ... [more]
A0A0G4EHV0_VITBC1.230e-3449.01C2 domain-containing protein n=4 Tax=Vitrella bras... [more]
A0A7S0LWE7_9CRYP2.440e-2854.90Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A4D9CRQ9_9STRA9.640e-2644.19Lipase_3 domain-containing protein n=1 Tax=Nannoch... [more]
A0A0G4FV41_9ALVE3.360e-2542.51C2 domain-containing protein n=1 Tax=Chromera veli... [more]
A0A1X6NQT7_PORUM6.370e-2544.29Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
A0A4D9D2C1_9STRA1.990e-2445.58C2 domain-containing protein n=4 Tax=Monodopsidace... [more]
A0A8J5XNB7_DIALT6.230e-2343.45C2 domain-containing protein n=2 Tax=Diacronema lu... [more]
A0A7S0YX09_9CRYP7.900e-2340.69Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10217contigP-wetherbeei_contig10217:820..1547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LR60
PFAMsC2,Lipase_3
Model size432
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.86e-38
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
Cds size426
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.4757357-UTR-P-wetherbeei_contig10217:819..8251683185859.4757357-UTR-P-wetherbeei_contig10217:819..825Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10217 820..825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.4917057-CDS-P-wetherbeei_contig10217:825..9361683185859.4917057-CDS-P-wetherbeei_contig10217:825..936Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10217 826..936 +
1683185859.5099227-CDS-P-wetherbeei_contig10217:999..11061683185859.5099227-CDS-P-wetherbeei_contig10217:999..1106Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10217 1000..1106 +
1683185859.5221653-CDS-P-wetherbeei_contig10217:1339..15471683185859.5221653-CDS-P-wetherbeei_contig10217:1339..1547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10217 1340..1547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10217.1.2prot_P-wetherbeei_contig10217.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10217 826..1547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10217.1.2

>prot_P-wetherbeei_contig10217.1.2 ID=prot_P-wetherbeei_contig10217.1.2|Name=mRNA_P-wetherbeei_contig10217.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MPKVHAGFRGAFASVREALADVIDIASGGDGNGASSGGWHILVTGHSLGG
ALATLTTLDFGRRFPKAQVTMYSFGAPRVGNTAFAELFSRVNGESFRVVN
KRDLVARMPRGRLAARWMDYKHTGRVALVDEDNLGSVWVEGE
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mRNA from alignment at P-wetherbeei_contig10217:820..1547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10217.1.2 ID=mRNA_P-wetherbeei_contig10217.1.2|Name=mRNA_P-wetherbeei_contig10217.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=728bp|location=Sequence derived from alignment at P-wetherbeei_contig10217:820..1547+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCAAATGCCGAAGGTTCACGCCGGCTTCCGCGGCGCCTTCGCCAGCGT CCGCGAAGCGCTGGCGGACGTCATCGACATCGCCAGCGGCGGCGACGGTA ACGGCGCCAGTTCTGGCGTCAGCGGTTTCTTTGGCGGCTTCGGCGGTTTC GGCGGCGGTGCGGGCAAAGGCGACGCGGAGGGCTGGCACATCCTCGTGAC AGGCCACTCGCTTGGCGGTGCACTGGCGACACTGACGACGCTGGACTTTG GACGGCGCTTCCCCAAGGCTCAGGTCACTATGTACAGGTGATGAAGGGAG ATTTCTGGAAGTGGCGGCCGCTTTTTCCTGTTTTTGAGTGTAGGCCGCCC TCCCTCAGAGTTTTCAGTGATTGATAGGCCTTTAACTGTCGATTCCTGCT GAGATCAATGTCGGGAGACCTCAAGTTCTACTGCTTTTGCCCTGTTGGTG CTGACCTCAGGGCTGTATCTTTCCGTTCTACCGTCTGCCTCTCCACTCCC CCACGGAAAACAACTCGCAGTTTTGGCGCGCCACGCGTGGGCAACACGGC CTTCGCCGAGCTCTTCTCCCGCGTCAACGGCGAGAGCTTCCGCGTCGTCA ACAAGCGCGACCTGGTGGCGCGGATGCCCCGGGGCCGGCTGGCGGCCCGC TGGATGGACTACAAGCACACCGGGCGGGTGGCACTCGTGGATGAGGACAA TCTCGGTTCCGTGTGGGTCGAAGGAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10217:820..1547+

>mRNA_P-wetherbeei_contig10217.1.2 ID=mRNA_P-wetherbeei_contig10217.1.2|Name=mRNA_P-wetherbeei_contig10217.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig10217:820..1547+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAAGGTTCACGCCGGCTTCCGCGGCGCCTTCGCCAGCGTCCGCGA
AGCGCTGGCGGACGTCATCGACATCGCCAGCGGCGGCGACGGTAACGGCG
CCAGTTCTGGCGGCTGGCACATCCTCGTGACAGGCCACTCGCTTGGCGGT
GCACTGGCGACACTGACGACGCTGGACTTTGGACGGCGCTTCCCCAAGGC
TCAGGTCACTATGTACAGTTTTGGCGCGCCACGCGTGGGCAACACGGCCT
TCGCCGAGCTCTTCTCCCGCGTCAACGGCGAGAGCTTCCGCGTCGTCAAC
AAGCGCGACCTGGTGGCGCGGATGCCCCGGGGCCGGCTGGCGGCCCGCTG
GATGGACTACAAGCACACCGGGCGGGTGGCACTCGTGGATGAGGACAATC
TCGGTTCCGTGTGGGTCGAAGGAGAG
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