mRNA_P-wetherbeei_contig10216.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10216.1.1
Unique NamemRNA_P-wetherbeei_contig10216.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10216.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10216contigP-wetherbeei_contig10216:1186..2169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size768
Hectar predicted targeting categoryother localisation
Exons2
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.421392-CDS-P-wetherbeei_contig10216:1185..15971683185859.421392-CDS-P-wetherbeei_contig10216:1185..1597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10216 1186..1597 -
1683185859.4325824-CDS-P-wetherbeei_contig10216:1813..19861683185859.4325824-CDS-P-wetherbeei_contig10216:1813..1986Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10216 1814..1986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.442655-UTR-P-wetherbeei_contig10216:1986..21691683185859.442655-UTR-P-wetherbeei_contig10216:1986..2169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10216 1987..2169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10216.1.1prot_P-wetherbeei_contig10216.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10216 1186..1986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10216.1.1

>prot_P-wetherbeei_contig10216.1.1 ID=prot_P-wetherbeei_contig10216.1.1|Name=mRNA_P-wetherbeei_contig10216.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MLPSLSEDMLEVLQQVWDYIGECDFVYVAGVARSWRDKARRSKKWETSFA
AVLLSVSRLVWAVKHSGLVWSCQLTRAAAASPNGAAVLDFAVENGLFKPT
ERNVAELCLFAVEAGQLSTLCWVRSRGFALPSELSRWAASRGRLDILRFA
QAAGNPWDARTACAAAAGGHLAVLQYARANGSPWCPLTCSSAALN
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mRNA from alignment at P-wetherbeei_contig10216:1186..2169-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10216.1.1 ID=mRNA_P-wetherbeei_contig10216.1.1|Name=mRNA_P-wetherbeei_contig10216.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=984bp|location=Sequence derived from alignment at P-wetherbeei_contig10216:1186..2169- (Phaeothamnion wetherbeei SAG_119_79)
CACGGATGCGGTACTTCCAATCCTGTTGAACTTATGGGGACAATGATAGA
GGCGGTGCCCCTTTGGGCACCACAACAACAAAACCACTCCGACGAACGGG
TTCGGCGAAGGCCTTTGCCCTTTCTTTTCCGACTGTAAGCAACAAGGTCC
TTCCATCTCACAGGCCAGGCGGAATCGAGCAACATGCTTCCTTCGCTGTC
GGAAGACATGCTGGAAGTGCTGCAGCAAGTGTGGGACTACATTGGAGAGT
GTGACTTCGTCTACGTTGCGGGGGTCGCGCGGAGTTGGAGAGACAAAGCA
CGAAGGTCGAAGAAGTGGGAGACGTCCTTTGCTGCCGTCCTCCTTTCGGT
CTCGAGGTGCGCCACTCATGTAATGCCGCCACCATGCCTGTCTTGGCCTT
GCGGAACCGTGCTTATGACGCGTTCTGATGATTGTTTGTTGTGATTGATC
TGTCGAAGAAGTTTGTCGTTGTGATGTTCGTTTGGATGGAAAACGGGTTC
CTTGCTGTGCACTCAGCGTCCGCATACCTGCACACCGTCCGTCCTTGCTC
CCCCTTCCGCTGGCCTCTTCAGGCTCGTTTGGGCCGTGAAACATAGCGGC
CTCGTCTGGAGCTGCCAGCTGACAAGGGCGGCCGCCGCGAGTCCGAACGG
CGCCGCCGTCCTCGACTTTGCCGTCGAGAACGGTCTCTTCAAGCCGACCG
AGCGAAACGTCGCCGAGCTCTGCCTCTTTGCCGTGGAAGCCGGCCAGCTC
TCAACGCTCTGCTGGGTCCGCTCCCGTGGCTTTGCCCTGCCCAGCGAGCT
TTCGCGCTGGGCGGCCTCTCGCGGACGCCTCGACATTCTCCGCTTCGCGC
AGGCCGCCGGCAACCCCTGGGATGCCCGGACAGCGTGCGCGGCCGCGGCA
GGCGGCCACTTGGCCGTGCTGCAGTACGCACGGGCAAATGGCTCGCCGTG
GTGTCCGCTCACGTGCTCGAGCGCCGCCCTAAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10216:1186..2169-

>mRNA_P-wetherbeei_contig10216.1.1 ID=mRNA_P-wetherbeei_contig10216.1.1|Name=mRNA_P-wetherbeei_contig10216.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig10216:1186..2169- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCCTTCGCTGTCGGAAGACATGCTGGAAGTGCTGCAGCAAGTGTG
GGACTACATTGGAGAGTGTGACTTCGTCTACGTTGCGGGGGTCGCGCGGA
GTTGGAGAGACAAAGCACGAAGGTCGAAGAAGTGGGAGACGTCCTTTGCT
GCCGTCCTCCTTTCGGTCTCGAGGCTCGTTTGGGCCGTGAAACATAGCGG
CCTCGTCTGGAGCTGCCAGCTGACAAGGGCGGCCGCCGCGAGTCCGAACG
GCGCCGCCGTCCTCGACTTTGCCGTCGAGAACGGTCTCTTCAAGCCGACC
GAGCGAAACGTCGCCGAGCTCTGCCTCTTTGCCGTGGAAGCCGGCCAGCT
CTCAACGCTCTGCTGGGTCCGCTCCCGTGGCTTTGCCCTGCCCAGCGAGC
TTTCGCGCTGGGCGGCCTCTCGCGGACGCCTCGACATTCTCCGCTTCGCG
CAGGCCGCCGGCAACCCCTGGGATGCCCGGACAGCGTGCGCGGCCGCGGC
AGGCGGCCACTTGGCCGTGCTGCAGTACGCACGGGCAAATGGCTCGCCGT
GGTGTCCGCTCACGTGCTCGAGCGCCGCCCTAAAC
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