mRNA_P-wetherbeei_contig10211.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10211.1.1
Unique NamemRNA_P-wetherbeei_contig10211.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: A0A835YVM0_9STRA (Cupin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.300e-49
Identity = 89/142 (62.68%), Postives = 106/142 (74.65%), Query Frame = 1
Query:   40 GREEEPAWVAEIGGYRSVPRVAVATAEEFMAEYVNKSRPAVITVRRSHYGFAPAKQWTWDALAKRFGDYSVHASLSQSGRFDGPEDGALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLGKA 465
            G + E  WV E+GGY  VPRVA+ +A+ F   YV +SRPAVIT  +   GFAP   W+W+ALA+RFG+  VH S+SQSGRFDGPEDG LWGLP GEE+LVRPP + +RF DFATLMRA     L+E FY+EYLA HQYLGKA
Sbjct:  391 GDQGERKWVTELGGYLEVPRVAITSAQHFWDAYVAESRPAVITNFQD--GFAPTSSWSWEALAQRFGNELVHVSVSQSGRFDGPEDGGLWGLP-GEEILVRPPGSTMRFGDFATLMRAN----LTETFYIEYLAVHQYLGKA 525          
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: A0A6H5K9Y1_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y1_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 3.810e-42
Identity = 82/146 (56.16%), Postives = 99/146 (67.81%), Query Frame = 1
Query:   25 AAAAVGREEEP-AWVAEIGGYRSVPRVAVATAEEFMAEYVNKSRPAVITVRRSHYGFAPAKQWTWDALAKRFGDYSVHASLSQSGRFDGPEDGALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLG 459
            A A V RE  P AWV E GGY S+P V ++  EEFM  +VNKS+PAVI       GFAP + W+W AL++RFGD  V  SLS++GRFDGPE G +WGL   +EVLVRPP T + F DF  L+R    E++ E FYLEYLA HQYLG
Sbjct:  324 AGAGVKREGAPSAWVEEAGGYLSLPEVEISGPEEFMEAFVNKSKPAVIKD-----GFAPKEAWSWTALSERFGDSVVRVSLSETGRFDGPEPGDMWGLAPDDEVLVRPPATSMAFSDFVRLLRQ---EDIKETFYLEYLALHQYLG 461          
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: A0A0M0J434_9EUKA (Phospholipase group n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J434_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 4.850e-25
Identity = 62/126 (49.21%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   85 RSVPRVAVATAEEFMAEYVNKSRPAVITVRRSHYGFAPAKQWTWDALAKRFGDYSVHASLSQSGRFDGPEDGALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLGK 462
            R V R  VATA E MA  +    P V+T  +   GFA    W+   LA   G+  V  S+SQSGRFDG EDG+LWGL  G++VLVRPP TH++ +D   L+     EE    FYLEY A HQYLGK
Sbjct:  494 RVVARRRVATAPELMA-LIKARAPVVLTNLQRDAGFASGDAWSAHQLAALAGERIVKVSISQSGRFDGSEDGSLWGLSEGQDVLVRPPETHMQLRDLLALLSL---EEPPAHFYLEYNALHQYLGK 615          
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: R1F592_EMIHU (JmjC domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F592_EMIHU)

HSP 1 Score: 108 bits (271), Expect = 1.010e-24
Identity = 60/140 (42.86%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   49 EEPAWVAEIGGYRSVPRVAVATAEEFMAEYVNKSRPAVITVRRSHYGFAPAKQWTWDALAKRFGDYSVHASLSQSGRFDGPEDGALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLGKAV 468
            E P+W+A   G   + R    ++E  M   V    P V+   +   GFAPA +W   AL    GD +V   +S +GR+DGPE G  WGLPAG EVLVRPP T +R  D+  L+     E   E FY+EY A HQYLG  V
Sbjct:  275 EPPSWLA---GAPEIARKRAPSSEAEMRAVVEAGEPVVLVGLQQATGFAPASRWGASALRAACGDSTVKVGVSPTGRYDGPEAGHRWGLPAGREVLVRPPETFMRLGDYLRLLE----EPTPESFYVEYNALHQYLGAPV 407          
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: R1E3C1_EMIHU (JmjC domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3C1_EMIHU)

HSP 1 Score: 108 bits (271), Expect = 1.220e-24
Identity = 60/140 (42.86%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   49 EEPAWVAEIGGYRSVPRVAVATAEEFMAEYVNKSRPAVITVRRSHYGFAPAKQWTWDALAKRFGDYSVHASLSQSGRFDGPEDGALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLGKAV 468
            E P+W+A   G   + R    ++E  M   V    P V+   +   GFAPA +W   AL    GD +V   +S +GR+DGPE G  WGLPAG EVLVRPP T +R  D+  L+     E   E FY+EY A HQYLG  V
Sbjct:  442 EPPSWLA---GAPEIARKRAPSSEAEMRAVVEAGEPVVLVGLQQATGFAPASRWGASALRAACGDSTVKVGVSPTGRYDGPEAGHRWGLPAGREVLVRPPETFMRLGDYLRLLE----EPTPESFYVEYNALHQYLGAPV 574          
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: A0A7S3UQJ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQJ4_HETAK)

HSP 1 Score: 105 bits (261), Expect = 1.270e-24
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  163 ITVRRSHYGFAPAKQWTWDALAKRFGDYSVHASLSQSGRFDGPEDGALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLG 459
            + ++     FA  +++  + L +RFGDY VHAS+S++GRFDGPEDG LWGLP  EEVLVRPP   LR + F  L          E  YLEYLA HQYLG
Sbjct:    1 VIIKNFQEQFAAKEEFGPEKLRERFGDYLVHASVSETGRFDGPEDGELWGLPPDEEVLVRPPGAALRLRTFLDLAALPPRRRPRETLYLEYLALHQYLG 99          
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: A0A7S3W181_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W181_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 8.950e-17
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  220 ALAKRFGDYSVHASLSQSGRFDGPEDGALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLGKAV 468
            AL    GD +V   +S +GR+DGPE G  WGLPAG EVLVRPP T +R  D+  L+     E   E FY+EY A HQYLG  V
Sbjct:    4 ALRAACGDSTVKVGVSPTGRYDGPEAGHRWGLPAGREVLVRPPETFMRLGDYLRLLE----EPTPESFYVEYNALHQYLGAPV 82          
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Match: A0A0G4FB28_9ALVE (JmjC domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FB28_9ALVE)

HSP 1 Score: 65.1 bits (157), Expect = 2.500e-9
Identity = 46/138 (33.33%), Postives = 66/138 (47.83%), Query Frame = 1
Query:  103 AVATAEEFMAEYVNKSRPAVITVRRSHYGFAPAKQWTWD-----------ALAKRFGDYSVHASLSQSGRFDGPEDGALWGL-----PAGE--EVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQYLGK 462
            A  + E F  ++V+   P V     +  G     ++ WD           AL     + +V  ++S+SGRFDGPE+G LWGL     P+G   EV VRP T  +R  DF ++    G   + +  Y EYL   QYLG+
Sbjct:  506 ATLSRERFERDHVSGGVPVVFRSGGASRGRGLQSEF-WDLSVWERENLERALNGTLANMTVRVAVSESGRFDGPENGTLWGLGDERLPSGAIPEVFVRPATGFMRLGDFLSIAGRPG---VGDSMYTEYLDVSQYLGE 639          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10211.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YVM0_9STRA6.300e-4962.68Cupin-like domain-containing protein n=1 Tax=Tribo... [more]
A0A6H5K9Y1_9PHAE3.810e-4256.16JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A0M0J434_9EUKA4.850e-2549.21Phospholipase group n=1 Tax=Chrysochromulina tobin... [more]
R1F592_EMIHU1.010e-2442.86JmjC domain-containing protein n=1 Tax=Emiliania h... [more]
R1E3C1_EMIHU1.220e-2442.86JmjC domain-containing protein n=1 Tax=Emiliania h... [more]
A0A7S3UQJ4_HETAK1.270e-2451.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3W181_EMIHU8.950e-1751.81Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A0G4FB28_9ALVE2.500e-933.33JmjC domain-containing protein n=1 Tax=Chromera ve... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10211contigP-wetherbeei_contig10211:1165..2144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3Q0
PFAMsCupin_8,Glyco_transf_41,Methyltransf_11,TPR_11,TPR_16,TPR_2,TPR_8
Model size468
Max annot lvl2759|Eukaryota
KEGG koko:K19219
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.6e-31
EggNOG OGsCOG1226@1|root,COG3914@1|root,KOG2508@2759|Eukaryota,KOG4626@2759|Eukaryota
Descriptionprotein N-acetylglucosaminyltransferase activity
Cds size468
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.1512506-CDS-P-wetherbeei_contig10211:1164..13481683185859.1512506-CDS-P-wetherbeei_contig10211:1164..1348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10211 1165..1348 +
1683185859.1635652-CDS-P-wetherbeei_contig10211:1639..17331683185859.1635652-CDS-P-wetherbeei_contig10211:1639..1733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10211 1640..1733 +
1683185859.1749716-CDS-P-wetherbeei_contig10211:1954..21441683185859.1749716-CDS-P-wetherbeei_contig10211:1954..2144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10211 1955..2144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10211.1.1prot_P-wetherbeei_contig10211.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10211 1165..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10211.1.1

>prot_P-wetherbeei_contig10211.1.1 ID=prot_P-wetherbeei_contig10211.1.1|Name=mRNA_P-wetherbeei_contig10211.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
ADSAASASAAAAVGREEEPAWVAEIGGYRSVPRVAVATAEEFMAEYVNKS
RPAVITVRRSHYGFAPAKQWTWDALAKRFGDYSVHASLSQSGRFDGPEDG
ALWGLPAGEEVLVRPPTTHLRFKDFATLMRAKGGEELSEVFYLEYLATHQ
YLGKAV
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mRNA from alignment at P-wetherbeei_contig10211:1165..2144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10211.1.1 ID=mRNA_P-wetherbeei_contig10211.1.1|Name=mRNA_P-wetherbeei_contig10211.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=980bp|location=Sequence derived from alignment at P-wetherbeei_contig10211:1165..2144+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGATTCTGCTGCTTCCGCCAGCGCTGCCGCCGCTGTGGGAAGGGAGGA GGAGCCTGCGTGGGTGGCGGAGATCGGCGGTTACCGCAGTGTCCCGCGCG TGGCAGTGGCGACGGCTGAGGAGTTCATGGCTGAGTACGTTAACAAGAGC CGCCCCGCCGTCATTACGGTGCGTCGCTCACATTGTCTCTTTTCCTTCAA TTTTTCCGAAGGCTCCTCCTGCATTGCAAAGGAAAGAGGTGCTTTGAAGT TTTTTGCAGTTATTTCTTGCTCGTTGGCCAGTGCATTGACGTGAGCTGTT GCCGGCCGTGGCCAACGCTTCATCTTGCGTGGTTTGCTTACAAACATTTC CACGATGCTGCAGACTGCCGCCGCTGGTTCGCTTCTTGTGAGTCCCATTG CCGCACTGACGACCGCCGCCGCTGGGCACTTGCAATTCATGTGTGTGCGA AAAACGAACAATCAGAACTTCCAAGACGGCTTCGCGCCGGCGAAGCAGTG GACCTGGGATGCACTGGCGAAGCGCTTCGGGGACTACTCTGTGCACGCTA GCCTCAGCCAGAGCGGCAGGTGCCGTCTCTCCCAAGATTTTCCTGCCCGC CGGGCGGCGCCGCGCACGGCCGGCACGCTCGAGCAATCCTGTTTGCTTAT CGAGCTCTCCACATCTTCAAGCTGACTTTTTCTTTCATAGTTTCCCTTGC CCTTTTTATCCCCGGCCCTCCCTTCTTTCCTCCAATTCCTTCACGATTTC CCCCTTTTCTCTTCTCTCCACGCTGTTCGTCTGCCGGCAGGTTTGACGGG CCGGAGGACGGCGCCCTCTGGGGGCTGCCAGCCGGCGAGGAAGTGCTGGT GCGGCCACCGACGACCCACCTGCGGTTCAAAGACTTTGCAACGCTGATGC GGGCCAAGGGTGGGGAGGAATTATCGGAGGTGTTCTACCTGGAGTACTTG GCGACGCACCAGTACCTCGGAAAGGCCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10211:1165..2144+

>mRNA_P-wetherbeei_contig10211.1.1 ID=mRNA_P-wetherbeei_contig10211.1.1|Name=mRNA_P-wetherbeei_contig10211.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig10211:1165..2144+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGATTCTGCTGCTTCCGCCAGCGCTGCCGCCGCTGTGGGAAGGGAGGA
GGAGCCTGCGTGGGTGGCGGAGATCGGCGGTTACCGCAGTGTCCCGCGCG
TGGCAGTGGCGACGGCTGAGGAGTTCATGGCTGAGTACGTTAACAAGAGC
CGCCCCGCCGTCATTACGGTGCGTCGCTCACATTACGGCTTCGCGCCGGC
GAAGCAGTGGACCTGGGATGCACTGGCGAAGCGCTTCGGGGACTACTCTG
TGCACGCTAGCCTCAGCCAGAGCGGCAGGTTTGACGGGCCGGAGGACGGC
GCCCTCTGGGGGCTGCCAGCCGGCGAGGAAGTGCTGGTGCGGCCACCGAC
GACCCACCTGCGGTTCAAAGACTTTGCAACGCTGATGCGGGCCAAGGGTG
GGGAGGAATTATCGGAGGTGTTCTACCTGGAGTACTTGGCGACGCACCAG
TACCTCGGAAAGGCCGTC
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