mRNA_P-wetherbeei_contig102.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig102.2.1
Unique NamemRNA_P-wetherbeei_contig102.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig102.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig102contigP-wetherbeei_contig102:1201..4284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2184
Hectar predicted targeting categoryother localisation
Exons5
Cds size1107
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig102.2.1prot_P-wetherbeei_contig102.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig102 2143..3901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185858.4754596-UTR-P-wetherbeei_contig102:1200..21421683185858.4754596-UTR-P-wetherbeei_contig102:1200..2142Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig102 1201..2142 -
1683185858.5232985-UTR-P-wetherbeei_contig102:3901..39501683185858.5232985-UTR-P-wetherbeei_contig102:3901..3950Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig102 3902..3950 -
1683185858.5317154-UTR-P-wetherbeei_contig102:4198..42841683185858.5317154-UTR-P-wetherbeei_contig102:4198..4284Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig102 4199..4284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185858.4829302-CDS-P-wetherbeei_contig102:2142..22971683185858.4829302-CDS-P-wetherbeei_contig102:2142..2297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig102 2143..2297 -
1683185858.490088-CDS-P-wetherbeei_contig102:2334..28171683185858.490088-CDS-P-wetherbeei_contig102:2334..2817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig102 2335..2817 -
1683185858.4999611-CDS-P-wetherbeei_contig102:3192..35561683185858.4999611-CDS-P-wetherbeei_contig102:3192..3556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig102 3193..3556 -
1683185858.5138605-CDS-P-wetherbeei_contig102:3796..39011683185858.5138605-CDS-P-wetherbeei_contig102:3796..3901Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig102 3797..3901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig102.2.1

>prot_P-wetherbeei_contig102.2.1 ID=prot_P-wetherbeei_contig102.2.1|Name=mRNA_P-wetherbeei_contig102.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=369bp
MATLWQVGSPLSLEDLTQLRYGTLDARLLYNAAWQGDIQRARMLLDAGVD
AAAKDAFLDTPLHAACSQPSEDMVKLLLVKGASAHARNRLRVSPLHRAAA
ENRVGPARVLLENRVDVNVPDEYGSSPLHLAALRGHVDMVALLLSRGANK
EAQDQAGSTPLFAAIAEGRVAVAVALLQAGANPRARNAVGQTVARAILDS
RRLDDATRETFMLMFISPLEPRRGSVGVPLGGGGGSSVLDDLARLAGTAA
LEDPPSPVKMTATPAAASLWAIAEARAAKEEAEEAESEGELVMEVVAAEP
ATPTSAESGIAEGDSEGAAAAASVTAVATAAAAAAAAAAAAARTAATAAA
RTGTLSARSDTRRGWCLC*
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mRNA from alignment at P-wetherbeei_contig102:1201..4284-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig102.2.1 ID=mRNA_P-wetherbeei_contig102.2.1|Name=mRNA_P-wetherbeei_contig102.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3084bp|location=Sequence derived from alignment at P-wetherbeei_contig102:1201..4284- (Phaeothamnion wetherbeei SAG_119_79)
GGACCCTCTGGCATTGCATTGCGGCCCGCCCATACACAGCCTCCGCGGCC
CCTTCGAAGCGAGGCATCTCTATTCCTGCGTGACAGGTACGCACAGTAAT
CGACGGGAACGGCGGTCCTCCTTCTACGTTTCACACGACCTCCCGCCATC
CTTCAACCATGGCGGAAAAGCGTCTTTCTGGCGCCGACGAAGGGAACTTT
GCAACCATGCTGCAAGATCAGATGCGCTGCAACGGCTCCTCTCCGTCCGG
GCCCTTTCAATGACTTGCCCAGCTCCTTCCCTGGCAAACCTTTTTCTAAT
ACCCCCTAACATCCTCTGCGCTAAAATCCTCCAGGACGACGTCTACCGAG
GAGAGCCTCTTAAATCTCTCGTAACTGGGAAGAATGGCGACGCTATGGCA
GGTCGGCTCCCCGCTATCACTTGAGGACTTGACGCAGCTTCGCTACGGCA
CCCTCGATGCGAGGCTGCTCTATAACGCCGCTTGGCAGGTAAGAGCAAAG
AATGATGCGCACGCCCGTTCGGTGCGAGACGAGCAGTGTACCAGTCCCAT
CCCTTCAACTCGTGGAGCGGAACTAGCTTGATCATTCTTTGACCTGCGGG
CGAGGAGCAGCTTGACGTGGAATCCGTCAACCATTTCTGCATATGGATCG
AGTCCAATCTTGCTTCCTTATCATCACTGGTTGCTGTCTCCATGACATCC
GCATAAACGCAAATCCCTGCTGTGCCAGGGCGACATCCAGCGAGCGCGGA
TGCTGCTGGACGCTGGCGTCGACGCCGCCGCGAAGGACGCTTTTTTAGAC
ACCCCGCTCCACGCGGCGTGCTCGCAGCCCTCCGAAGATATGGTGAAACT
TCTCCTCGTGAAAGGCGCGTCGGCGCACGCCCGCAACCGGCTTCGTGTCA
GCCCGCTGCACCGGGCGGCCGCCGAAAACCGCGTGGGCCCGGCGCGGGTC
CTGCTGGAGAACCGGGTGGACGTGAACGTGCCGGATGAGTACGGGTCGTC
GCCGCTGCACCTGGCGGCGCTGCGGGGCCACGTCGACATGGTGGCGCTGC
TGCTTTCGCGCGGCGCCAACAAGGAGGCGCAGGACCAGGCCGGTGAGAGG
AGGAGAAATTTGGTTGCTGGGAACGTTACAGACTTTTGCCTTTCAGCTTA
TTTCTTTTGGTGTGGTTGAGCATGGAAGGAGATATAGTGTGGAACTGTTT
CTCGTTCCGCTCCTTTTCAGCTTGTGCAGTTGGCGGCAGCTCTTGCCTTG
TTGTGCTCATTTTATTCGGACGGAAGAGAACGTGGTGCATCTTTCAATTT
TTGCCGCGATTAGAACCTACTAGCCCAGGTCCTGAGGCATGATTGCCCTC
TTCTTCTGCGTGGAACGCTGTGAGCAACCGTTTAAATAATTTTCTCCTCG
CATACCTCATTTTCTGCTTCCTTGCCCTATTTCCTTCCATTGCCCACCTT
CTCCCACCCCACCGTAGGCAGCACGCCGCTCTTCGCCGCCATCGCCGAGG
GCCGCGTCGCCGTCGCAGTGGCGCTCCTGCAGGCCGGCGCCAACCCGCGC
GCCCGCAACGCCGTCGGCCAGACGGTCGCCCGCGCCATCCTCGACAGCCG
CCGCCTCGACGACGCCACCCGCGAGACCTTCATGCTCATGTTCATCAGCC
CGCTCGAGCCCCGCCGCGGCAGCGTCGGCGTCCCTCTAGGCGGCGGCGGC
GGGAGCAGCGTGCTGGACGACCTGGCGCGGCTGGCGGGCACGGCGGCGCT
CGAGGACCCGCCATCCCCGGTCAAGATGACGGCGACGCCAGCGGCGGCGT
CGCTGTGGGCCATCGCCGAGGCGCGCGCCGCTAAGGAGGAGGCGGAGGAG
GCCGAGTCGGAGGGGGAGCTGGTGATGGAAGTGGTAGCGGCGGAGCCCGC
AACGCCGACGTCGGCGGAGTCCGGCATTGCTGAGGGCGACAGCGAGGGTG
GCGCTGGCGTTCTGGAGGAAGGGCGGGTGGCTGAAAGCGGCCGCGGCAGC
TTCAGTAACGGCAGTGGCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGCGGACGGCAGCGACGGCGGCAGCGCGAACAGGCACCCTA
TCGGCGCGAAGCGACACGCGGCGCGGCTGGTGCCTGTGCTAGGACTGAAG
CTCGGCTCCTTCCGGTCCAGGTCTGGGTCCGACGATGGCGGCTCGGCGGC
ACCGAAGTCCCAGGCGCAGACAGCGCTGGGCCGATCGCTGACGGCCGCCC
AAAGTGCCGCCGCCGCCGCGGGGGCTGCCGCGACGCGCGCCTCGGGGCGG
CTTCCGTCGCCGTCGAATAAGAAGCGCGCCCAGGTGCCTTCCCTCGCGTC
ACCCTAGACTCGCATCGCGGACAGCTCCGGTGCTGATAGCGGCAGAGGTA
GGCGGCAGTGGCAGTGTCAGGTGGCAGCAGCAGCCGGCAAAGGCGGCTGC
GGCAGTGGCAGGTGGTAGTGACAGCAGCGACAGCAGCGACAGCAGCGACA
GCAGCGACAGCAGCGACAGCAGCGACAGCAGCGACAGCAGCGACAGCAGC
GGCAGCAGTTAGCGGCCCGCAACTGCAGGAGACGCGCAACTGCAGGAGAC
GCGCAACGGCAACGACAGTCAGCAACAAACTGAACGCCTTCCCTTCCGTC
CACCGGGAGCCTTCGCTACCGGCGAATGAGCTCGAACAGGTGCGGTCAGC
GTCACCTTGTAAACATAGTTGCTAGCAGCGGGGCAGATGGAGGGAGAGAA
ACTTGATTGTCAATGGCCTCGCGCTGATCGAGGAAGGAAGATTGGGGGAG
GGCGGTTGAGAGTGCGGAGGAAGGAGAGGGACCGAGTCTAGCACCCATCA
ACAGGGCACCGCTGCCCGCTCTTCTGAGCCCCTTTGACGGGAGCTCAAGG
GCGAGGGGGCTTCTGCCGTATAATTCGGAGGAGGTTGGCTCGCTGGGTGG
CTGTTATCGCTGCGGGGCTTGGTGCCACGCGGCGGATGGCAAACCGTCAT
TCTACAAAGCCGTTCTTCCGGGAGGAGAATCTGGGAATGCGCAACGAAAC
TAATCCGGAGAAAGAACTTATTGTTGGCGACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig102:1201..4284-

>mRNA_P-wetherbeei_contig102.2.1 ID=mRNA_P-wetherbeei_contig102.2.1|Name=mRNA_P-wetherbeei_contig102.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1107bp|location=Sequence derived from alignment at P-wetherbeei_contig102:1201..4284- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGCTATGGCAGGTCGGCTCCCCGCTATCACTTGAGGACTTGAC
GCAGCTTCGCTACGGCACCCTCGATGCGAGGCTGCTCTATAACGCCGCTT
GGCAGGGCGACATCCAGCGAGCGCGGATGCTGCTGGACGCTGGCGTCGAC
GCCGCCGCGAAGGACGCTTTTTTAGACACCCCGCTCCACGCGGCGTGCTC
GCAGCCCTCCGAAGATATGGTGAAACTTCTCCTCGTGAAAGGCGCGTCGG
CGCACGCCCGCAACCGGCTTCGTGTCAGCCCGCTGCACCGGGCGGCCGCC
GAAAACCGCGTGGGCCCGGCGCGGGTCCTGCTGGAGAACCGGGTGGACGT
GAACGTGCCGGATGAGTACGGGTCGTCGCCGCTGCACCTGGCGGCGCTGC
GGGGCCACGTCGACATGGTGGCGCTGCTGCTTTCGCGCGGCGCCAACAAG
GAGGCGCAGGACCAGGCCGGCAGCACGCCGCTCTTCGCCGCCATCGCCGA
GGGCCGCGTCGCCGTCGCAGTGGCGCTCCTGCAGGCCGGCGCCAACCCGC
GCGCCCGCAACGCCGTCGGCCAGACGGTCGCCCGCGCCATCCTCGACAGC
CGCCGCCTCGACGACGCCACCCGCGAGACCTTCATGCTCATGTTCATCAG
CCCGCTCGAGCCCCGCCGCGGCAGCGTCGGCGTCCCTCTAGGCGGCGGCG
GCGGGAGCAGCGTGCTGGACGACCTGGCGCGGCTGGCGGGCACGGCGGCG
CTCGAGGACCCGCCATCCCCGGTCAAGATGACGGCGACGCCAGCGGCGGC
GTCGCTGTGGGCCATCGCCGAGGCGCGCGCCGCTAAGGAGGAGGCGGAGG
AGGCCGAGTCGGAGGGGGAGCTGGTGATGGAAGTGGTAGCGGCGGAGCCC
GCAACGCCGACGTCGGCGGAGTCCGGCATTGCTGAGGGCGACAGCGAGGG
TGCGGCCGCGGCAGCTTCAGTAACGGCAGTGGCAACGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGCGGACGGCAGCGACGGCGGCAGCG
CGAACAGGCACCCTATCGGCGCGAAGCGACACGCGGCGCGGCTGGTGCCT
GTGCTAG
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