mRNA_P-wetherbeei_contig102.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig102.1.1
Unique NamemRNA_P-wetherbeei_contig102.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: D7FJB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJB4_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.490e-42
Identity = 102/287 (35.54%), Postives = 131/287 (45.64%), Query Frame = 1
Query:    1 GGCEACPS-INRCPRFAATPFRPDVCLCTHAISHHVVDAPPA------------------------------AEANLRSAAAEVLH-------ALGRRGIKRLMCLRSTVGTLGVVVPPPRRTLLEALEVPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRKAVTTADAADCFKGPAFAANLTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            G CE C + + +C RF++TP RP++C+CTH  SHH    P A                              A A    AA ++L        ++G+ GI+ L+ L+ TVG++   +PP RR LL+A+  PH                                    +A+       C         LTVGGRAL KH  R+  GWWG  GG  A KN  A    +R+L GA W++ H F G G  G  E+RE  GYGARWSADG  FRGFLEP M  GHE  WRH
Sbjct:  149 GACEMCETTVVKCHRFSSTPCRPELCVCTHGSSHHACIDPRATPISLPALTERPGENVVGARATCDSRTTQSASARWNLAAVDLLRRGEKFISSIGQAGIRDLLGLKRTVGSIDGCLPPSRRVLLKAINKPHLLVVSEGCAGTRSSGSCLAADGSQKRSEG-------RAILPRATTVCI--------LTVGGRALCKHAVRAREGWWGECGGTEAEKNDHAEEVTLRLLAGATWVNLHVFGGGGKDGVLEIREESGYGARWSADGAVFRGFLEPHMKDGHEKGWRH 420          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: A0A7S1C8E3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8E3_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.140e-29
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVG RAL KHCHR+S GWWG   G  AAKNA  R  + R+LDGA WL+ H       +   EVR  +GYGARW+ADG  FRGFLEP  A GH   W+H
Sbjct:   60 LTVGARALAKHCHRASSGWWGAAAGSEAAKNAWGREVLARVLDGATWLNVHLLPH--AAAIVEVRTADGYGARWTADGAAFRGFLEPHAADGHATGWKH 156          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: A0A1Y1HVJ8_KLENI (RNA-binding ASCH domain protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HVJ8_KLENI)

HSP 1 Score: 123 bits (309), Expect = 2.340e-29
Identity = 63/99 (63.64%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVG RALTKH HR S  WWG   G   AKN  ARA V+RILDGAVW +AH    D     FE R  EGYGARWSADG +FRGFLEP M GGH+  WRH
Sbjct:  313 LTVGARALTKHAHRCSHNWWGVPTGSEQAKNEHARAVVLRILDGAVWQNAHLLPHD--VAVFEARVAEGYGARWSADGTQFRGFLEPQMEGGHQRGWRH 409          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: D8SWM3_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SWM3_SELML)

HSP 1 Score: 117 bits (294), Expect = 7.490e-29
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVGGRAL KH +RSS GWWG   G   AKN  A  AV RI+D A W++ H       +  FE+R  +GYGARWS+DG++FRGF+EPPM  GH +KWRH
Sbjct:  119 LTVGGRALAKHVNRSSAGWWGACSGTETAKNKVALKAVCRIIDQASWMNTHHLPQS--THIFEIRVQDGYGARWSSDGKQFRGFVEPPMKDGHSSKWRH 215          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: A0A8K1C5L6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5L6_PYTOL)

HSP 1 Score: 117 bits (293), Expect = 3.560e-28
Identity = 59/99 (59.60%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVG RA TKHC RSS GWWG I G +AAKNA A A ++ ILD AVW + H+     G   FEVR   GYGARW      FRGFLEPPM  GHE +WRH
Sbjct:  170 LTVGARAFTKHCQRSSDGWWGAIKGNDAAKNATALAKLLEILDHAVWKNVHSLPH--GEATFEVRNAMGYGARWYLRDLSFRGFLEPPMENGHENRWRH 266          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: A0A7S0TZ44_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TZ44_HEMAN)

HSP 1 Score: 113 bits (282), Expect = 4.440e-28
Identity = 58/99 (58.59%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVG RAL KH  RSS  WWG   G  AAKNA A + ++RI +GA W + H   G  G   FEVR G+GYGARW ADG  FRGFLEP M GGHE  W H
Sbjct:   34 LTVGARALAKHAVRSSDKWWGDPRGPEAAKNAEALSVLLRIFEGAEWSNTHLLPG--GLAVFEVRHGDGYGARWGADGMTFRGFLEPQMEGGHEKGWLH 130          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: D8SW28_SELML (Uncharacterized protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SW28_SELML)

HSP 1 Score: 117 bits (292), Expect = 5.000e-28
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVGGRAL KH +RSS GWWG   G   AKN  A  AV RI+D A W++ H       +  FE+R  +GYGARWS+DG++FRGF+EPPM  GH +KWRH
Sbjct:  170 LTVGGRALAKHVNRSSAGWWGACSGTETAKNKIALKAVCRIIDQASWMNIHHLPQS--THIFEIRVQDGYGARWSSDGKQFRGFVEPPMKDGHSSKWRH 266          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: A0A225VM47_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VM47_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.790e-26
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVG RA +KHC RSS GWWG + G +AAKNA A + V  +L  + W + H+          EVR G GYGARW A+ + FRGFLEPPM  GHE KWRH
Sbjct:  148 LTVGARAFSKHCARSSSGWWGEMKGNDAAKNARAESKVKELLASSTWKNIHSLPH--AHATMEVRNGLGYGARWDAETQTFRGFLEPPMTNGHEIKWRH 244          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: A9T753_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T753_PHYPA)

HSP 1 Score: 110 bits (275), Expect = 1.750e-25
Identity = 68/198 (34.34%), Postives = 91/198 (45.96%), Query Frame = 1
Query:  154 EVLHALGRRGIKRLMCLRSTVGTLGVVVPPPRRTLLEALEVPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRKAVTTADAADCFKGPAFAANLTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            ++L+ LG  G++ L+ +R+T GTL   +PPP+  L ++                                          A+   D A C         ++VG RAL KH  RS  GWWG I G  AAKN  A   + R++  AVW++ H           E+R  +GYGARW ADG +FRGFLEPPM  GH   WRH
Sbjct:  127 DILNTLGIDGVRVLLGMRTTNGTLKEALPPPKSLLADSFS----------------------------------------ALQNPDIAGC--------RISVGARALAKHAPRSLDGWWGSISGTEAAKNKLAETTMHRLMKHAVWINIHLAP----IPVLEIRVADGYGARWLADGSKFRGFLEPPMEEGHMVNWRH 272          
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Match: A0A0P1B0P5_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0P5_PLAHL)

HSP 1 Score: 110 bits (275), Expect = 2.410e-25
Identity = 55/99 (55.56%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  451 LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSAHTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH 747
            LTVG RA TKHC RSS GWWG + G +AAKN  A A V  +L  A W + H+     G    E+R   GYGARW A+ R FRGFLEPPM  GH  KWRH
Sbjct:  192 LTVGARAYTKHCTRSSSGWWGELKGNDAAKNVQAEAKVRDLLATATWKNIHSLPH--GHATMEIRNSLGYGARWDAETRHFRGFLEPPMLNGHAIKWRH 288          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJB4_ECTSI3.490e-4235.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1C8E3_9STRA2.140e-2956.57Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1Y1HVJ8_KLENI2.340e-2963.64RNA-binding ASCH domain protein n=1 Tax=Klebsormid... [more]
D8SWM3_SELML7.490e-2956.57Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A8K1C5L6_PYTOL3.560e-2859.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0TZ44_HEMAN4.440e-2858.59Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
D8SW28_SELML5.000e-2856.57Uncharacterized protein (Fragment) n=1 Tax=Selagin... [more]
A0A225VM47_9STRA6.790e-2654.55Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A9T753_PHYPA1.750e-2534.34Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A0P1B0P5_PLAHL2.410e-2555.56Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig102contigP-wetherbeei_contig102:155..1030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJB4
PFAMsASCH
Model size750
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.73e-43
EggNOG OGsCOG4043@1|root,2QW79@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_008170.1
Cds size750
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185858.559474-CDS-P-wetherbeei_contig102:154..5351683185858.559474-CDS-P-wetherbeei_contig102:154..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig102 155..535 +
1683185858.5693157-CDS-P-wetherbeei_contig102:661..10301683185858.5693157-CDS-P-wetherbeei_contig102:661..1030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig102 662..1030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig102.1.1prot_P-wetherbeei_contig102.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig102 155..1030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig102.1.1

>prot_P-wetherbeei_contig102.1.1 ID=prot_P-wetherbeei_contig102.1.1|Name=mRNA_P-wetherbeei_contig102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=250bp
GGCEACPSINRCPRFAATPFRPDVCLCTHAISHHVVDAPPAAEANLRSAA
AEVLHALGRRGIKRLMCLRSTVGTLGVVVPPPRRTLLEALEVPHTPHPSL
TAPTEATKTAATTATIITTIATAATMATTRKAVTTADAADCFKGPAFAAN
LTVGGRALTKHCHRSSCGWWGGIGGGNAAKNAAARAAVMRILDGAVWLSA
HTFAGDGGSGCFEVREGEGYGARWSADGRRFRGFLEPPMAGGHEAKWRH*
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mRNA from alignment at P-wetherbeei_contig102:155..1030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig102.1.1 ID=mRNA_P-wetherbeei_contig102.1.1|Name=mRNA_P-wetherbeei_contig102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=876bp|location=Sequence derived from alignment at P-wetherbeei_contig102:155..1030+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTGCGAAGCCTGTCCGAGCATAAACCGGTGTCCGCGCTTCGCTGC TACGCCGTTCCGGCCCGATGTGTGTTTGTGCACTCATGCCATCTCGCACC ACGTAGTGGATGCACCGCCCGCTGCAGAGGCTAATCTCAGAAGTGCCGCC GCCGAGGTCTTACACGCGCTTGGCCGCAGAGGTATCAAGCGACTGATGTG CCTGAGGTCGACCGTGGGAACGCTGGGTGTAGTGGTGCCGCCACCGCGAA GGACTCTCTTGGAGGCGCTCGAAGTGCCCCACACGCCTCATCCTTCTTTG ACGGCCCCAACGGAGGCAACGAAGACAGCGGCGACAACGGCGACGATTAT AACGACGATCGCGACGGCGGCGACAATGGCTGTAACGGCGACCACAAAGG CGGCGACGGCGGCAATGACGGCTGGGGCGGCGCCAGCAACAGCACCGGTG GCGGCGACGAGAGCGGTGATGGCGGCGACGGCATTAGCAAAGGCAACAAT AACAAAGACGACAAGAAAGGCGGTGACGACTGCGGACGCAGCTGACTGCT TCAAAGGACCGGCTTTCGCGGCAAATTTGACGGTCGGGGGCCGTGCGCTG ACCAAGCACTGCCACCGTAGCTCATGTGGCTGGTGGGGCGGCATCGGCGG CGGCAACGCGGCAAAGAACGCCGCGGCGCGCGCGGCCGTCATGCGCATTC TGGACGGCGCCGTCTGGCTGTCCGCCCACACCTTTGCCGGCGACGGCGGC AGCGGCTGCTTTGAGGTTCGAGAGGGCGAAGGTTACGGCGCCCGCTGGTC GGCCGACGGCCGCCGCTTTCGGGGCTTCCTAGAGCCGCCCATGGCCGGCG GTCATGAGGCCAAGTGGCGCCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig102:155..1030+

>mRNA_P-wetherbeei_contig102.1.1 ID=mRNA_P-wetherbeei_contig102.1.1|Name=mRNA_P-wetherbeei_contig102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig102:155..1030+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTGCGAAGCCTGTCCGAGCATAAACCGGTGTCCGCGCTTCGCTGC
TACGCCGTTCCGGCCCGATGTGTGTTTGTGCACTCATGCCATCTCGCACC
ACGTAGTGGATGCACCGCCCGCTGCAGAGGCTAATCTCAGAAGTGCCGCC
GCCGAGGTCTTACACGCGCTTGGCCGCAGAGGTATCAAGCGACTGATGTG
CCTGAGGTCGACCGTGGGAACGCTGGGTGTAGTGGTGCCGCCACCGCGAA
GGACTCTCTTGGAGGCGCTCGAAGTGCCCCACACGCCTCATCCTTCTTTG
ACGGCCCCAACGGAGGCAACGAAGACAGCGGCGACAACGGCGACGATTAT
AACGACGATCGCGACGGCGGCGACAATGGCTACGACAAGAAAGGCGGTGA
CGACTGCGGACGCAGCTGACTGCTTCAAAGGACCGGCTTTCGCGGCAAAT
TTGACGGTCGGGGGCCGTGCGCTGACCAAGCACTGCCACCGTAGCTCATG
TGGCTGGTGGGGCGGCATCGGCGGCGGCAACGCGGCAAAGAACGCCGCGG
CGCGCGCGGCCGTCATGCGCATTCTGGACGGCGCCGTCTGGCTGTCCGCC
CACACCTTTGCCGGCGACGGCGGCAGCGGCTGCTTTGAGGTTCGAGAGGG
CGAAGGTTACGGCGCCCGCTGGTCGGCCGACGGCCGCCGCTTTCGGGGCT
TCCTAGAGCCGCCCATGGCCGGCGGTCATGAGGCCAAGTGGCGCCACTGA
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