mRNA_P-wetherbeei_contig1013.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1013.4.1
Unique NamemRNA_P-wetherbeei_contig1013.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1013.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1013contigP-wetherbeei_contig1013:2935..3384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size172
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.881064-CDS-P-wetherbeei_contig1013:2935..30181683185855.881064-CDS-P-wetherbeei_contig1013:2935..3018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 2936..3018 -
1683185855.8933287-CDS-P-wetherbeei_contig1013:3296..33841683185855.8933287-CDS-P-wetherbeei_contig1013:3296..3384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1013 3297..3384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1013.4.1prot_P-wetherbeei_contig1013.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1013 2936..3384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1013.4.1

>prot_P-wetherbeei_contig1013.4.1 ID=prot_P-wetherbeei_contig1013.4.1|Name=mRNA_P-wetherbeei_contig1013.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
HRLADVGGRRIHPYSVLALLYGLLRVSHEEFFDAAPREARTDMATGWQDA
SCSLLLN
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mRNA from alignment at P-wetherbeei_contig1013:2935..3384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1013.4.1 ID=mRNA_P-wetherbeei_contig1013.4.1|Name=mRNA_P-wetherbeei_contig1013.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:2935..3384- (Phaeothamnion wetherbeei SAG_119_79)
CACAGGCTTGCGGACGTCGGGGGCCGCCGCATACACCCTTACAGTGTACT
TGCCCTTCTTTACGGGCTCCTGCGTGTATCGCACGAAGGTAAATCCGCCG
GGTAGGGCGCCAGCTACCAGCGCTGGTGCCTCTGTGCCCACAAACGCCGC
GTTAACAGCGTGCGCAGCCATGCTCAGCCAGCAGAAACCGAGAACAGAGA
GCGATATTTGAACTTGATTCTTTCCTCCGGGTCGCGAAAGAGTTACAGGA
AATTTCGAGCGTTGTCGGAGAGCCCTTAGCGGGAAGAATCAACCCATGCA
ACCCTTATCTCCGTCCGCCCTTTTGATTGATCGTAAAAGCGTTGGGAATC
AATCCCCCCGTGTCAGAATTCTTCGATGCTGCACCACGGGAGGCACGGAC
GGACATGGCAACAGGATGGCAGGACGCGTCATGTTCTCTACTTTTAAACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1013:2935..3384-

>mRNA_P-wetherbeei_contig1013.4.1 ID=mRNA_P-wetherbeei_contig1013.4.1|Name=mRNA_P-wetherbeei_contig1013.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig1013:2935..3384- (Phaeothamnion wetherbeei SAG_119_79)
CACAGGCTTGCGGACGTCGGGGGCCGCCGCATACACCCTTACAGTGTACT
TGCCCTTCTTTACGGGCTCCTGCGTGTATCGCACGAAGAATTCTTCGATG
CTGCACCACGGGAGGCACGGACGGACATGGCAACAGGATGGCAGGACGCG
TCATGTTCTCTACTTTTAAAC
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