mRNA_P-wetherbeei_contig10127.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10127.1.1
Unique NamemRNA_P-wetherbeei_contig10127.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: A0A1Y2R424_9BURK (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase n=1 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2R424_9BURK)

HSP 1 Score: 236 bits (602), Expect = 4.040e-76
Identity = 110/131 (83.97%), Postives = 119/131 (90.84%), Query Frame = 1
Query:    1 GPALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSVAFRARVPERGVTVLSHGHADISFS 393
            GP L ATPD+EPD V+D+ TRADAALLYRLSGD NPLHADPDVAT+AGFPKPILHGLATYGV CRAL++ FC NDPARLKSMR RMSSPVFPGETIRVECWRKP+ VAFRAR+P R VTVLSHGHAD+SFS
Sbjct:  160 GPTLPATPDTEPDHVVDMPTRADAALLYRLSGDLNPLHADPDVATRAGFPKPILHGLATYGVTCRALLSAFCGNDPARLKSMRARMSSPVFPGETIRVECWRKPEGVAFRARIPARDVTVLSHGHADLSFS 290          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: A0A6P2F1B6_9BURK (Enoyl reductase domain of yeast-type FAS1 n=1 Tax=Variovorax sp. PBL-H6 TaxID=434009 RepID=A0A6P2F1B6_9BURK)

HSP 1 Score: 197 bits (502), Expect = 6.020e-61
Identity = 93/128 (72.66%), Postives = 105/128 (82.03%), Query Frame = 1
Query:    4 PALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSVAFRARVPERGVTVLSHGHADIS 387
            P   ATP+  PD VID+ TR DAALLYRLSGD NPLHADP VA KAGFPKPILHGLATYG+ACRAL+A FC  D  RL+SMR RMSSPV+PGETIR+ECWR   +VAFRARVPER + VL+HG AD++
Sbjct:  162 PPFEATPERAPDLVIDMTTRPDAALLYRLSGDLNPLHADPAVAEKAGFPKPILHGLATYGIACRALLAHFCGYDARRLRSMRARMSSPVYPGETIRLECWRADGAVAFRARVPERDLLVLTHGRADVA 289          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: UPI00131D9505 (MaoC family dehydratase N-terminal domain-containing protein n=1 Tax=Xenophilus sp. L33 TaxID=1747220 RepID=UPI00131D9505)

HSP 1 Score: 196 bits (499), Expect = 1.520e-60
Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 1
Query:    4 PALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSVAFRARVPERGVTVLSHGHADIS 387
            P   ATPD  P+ V D+ TRADAALLYRLSGD NPLHADPD+A KAGFPKPILHGLAT+G+A RAL+A F  +DP RLKS+R RMSSPVFPGETIRVECWR+   VAFRA+V ER VTVL+HGHA I+
Sbjct:  161 PPFEATPDGAPEAVFDLPTRADAALLYRLSGDLNPLHADPDIAAKAGFPKPILHGLATFGIAGRALVANFGGHDPRRLKSLRARMSSPVFPGETIRVECWRRDGGVAFRAKVVEREVTVLTHGHAAIA 288          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: A0A0K8P686_IDESA (Dehydrogenase with different specificities n=1 Tax=Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6) TaxID=1547922 RepID=A0A0K8P686_IDESA)

HSP 1 Score: 186 bits (473), Expect = 1.300e-56
Identity = 88/128 (68.75%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    4 PALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSV-AFRARVPERGVTVLSHGHADI 384
            PAL ATP++ PD V+++ TR DAALLYRLSGD NPLH DP VA +AGFPKPILHGLATYG AC  ++  FC+ DP+RL S+R R+SSPVFPGETIR+ECWR PD V AFR RV ER V VLSHG A +
Sbjct:  161 PALPATPETPPDLVVELPTRPDAALLYRLSGDLNPLHVDPAVAARAGFPKPILHGLATYGTACHGIVKAFCEYDPSRLTSIRARLSSPVFPGETIRLECWRLPDGVVAFRGRVAERDVVVLSHGRATL 288          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: A0A6P1J0Q3_9BURK (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase n=1 Tax=Hydrogenophaga sp. BPS33 TaxID=2651974 RepID=A0A6P1J0Q3_9BURK)

HSP 1 Score: 186 bits (471), Expect = 2.750e-56
Identity = 86/129 (66.67%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 GPALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSVAFRARVPERGVTVLSHGHADIS 387
            G A  ATPD+ PD V+D+ TR + AL+YRLSGD+NPLH+DPDVAT AGFP+PILHGL TYGVAC  L+  FC  D ARLKSM  R S+P FPG+ IR+ECWR  + +AFRARVP R VTVLSHGHA  S
Sbjct:  160 GEAPKATPDTAPDLVVDLPTRPETALIYRLSGDYNPLHSDPDVATAAGFPRPILHGLGTYGVACHGLVKAFCGYDAARLKSMGARFSAPTFPGDVIRLECWRTDEGIAFRARVPARDVTVLSHGHAVCS 288          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: A0A120D7X9_9BURK (MaoC-like dehydratase n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A120D7X9_9BURK)

HSP 1 Score: 174 bits (441), Expect = 9.260e-52
Identity = 82/129 (63.57%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    4 PALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKP-DSVAFRARVPERGVTVLSHGHADIS 387
            PA  ATPDS PD  I++ TRADAALLYRLSGD NPLH DP VA KAGFP+PILHGLATYG ACR ++A+FC +D +RLKS+R R++SPV+PGET+ ++CWR+  + +AF A V ERGV VL++G A ++
Sbjct:  161 PAALATPDSAPDTTIELPTRADAALLYRLSGDTNPLHVDPAVAAKAGFPRPILHGLATYGNACRGILAQFCGHDASRLKSIRARLTSPVYPGETLVLDCWRQDGEEIAFNASVKERGVQVLANGRAVLA 289          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: M4Z5E0_9BRAD (MaoC-like dehydratase n=4 Tax=Bradyrhizobium TaxID=374 RepID=M4Z5E0_9BRAD)

HSP 1 Score: 174 bits (440), Expect = 1.210e-51
Identity = 81/119 (68.07%), Postives = 94/119 (78.99%), Query Frame = 1
Query:   22 PDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSVAFRARVPERGVTVLSHGHA 378
            PD  PD V+ + TR D A+LYRLSGD NPLH DP VA+KAGF KPILHGLA+YG ACR L+  FCD DPARLK++R RMS+PVFPG+TIR+ECWR  D +AF+ARV ER   VLSHG A
Sbjct:  167 PDRTPDRVVTLPTRPDQAVLYRLSGDLNPLHIDPAVASKAGFQKPILHGLASYGFACRGLVESFCDGDPARLKTIRARMSAPVFPGDTIRLECWRLDDRIAFQARVVERDALVLSHGWA 285          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: UPI001FFB743E (MaoC family dehydratase N-terminal domain-containing protein n=1 Tax=Bradyrhizobium sp. 1 TaxID=241591 RepID=UPI001FFB743E)

HSP 1 Score: 172 bits (436), Expect = 4.840e-51
Identity = 83/127 (65.35%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    4 PALGATP--DSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSVAFRARVPERGVTVLSHGHA 378
            PA   TP  D  PD VI + TR D A+LYRLSGD NPLH DP VA+KAGFP+PILHGLATYG+ACR L+  FCD DPA LK++R RMS+PVFPG+TI++ECW   D +AF+ARV ER   VLSHG A
Sbjct:  159 PAAAPTPVPDRRPDRVITLPTRPDQAVLYRLSGDLNPLHIDPAVASKAGFPRPILHGLATYGIACRGLVETFCDGDPAGLKTIRARMSAPVFPGDTIQLECWPLDDRIAFQARVVERDALVLSHGWA 285          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: A0A244E5M9_9BURK (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A244E5M9_9BURK)

HSP 1 Score: 172 bits (436), Expect = 5.400e-51
Identity = 80/129 (62.02%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    4 PALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRK-PDSVAFRARVPERGVTVLSHGHADIS 387
            PA  ATPD+ PD   +++TRADAA+LYRLSGD NPLH DP VA KAGFPKPILHGLATYG ACR ++A FC +D +R+KS+R R++SPV+PGET+ ++CWR   + +AFRA V ERGV VL++G A ++
Sbjct:  161 PAAPATPDTAPDATFELSTRADAAVLYRLSGDINPLHIDPAVAAKAGFPKPILHGLATYGNACRGILAGFCGHDASRMKSIRARLTSPVYPGETLVLDCWRLGSEEIAFRASVKERGVQVLANGRAVLA 289          
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Match: UPI001BA47608 (MaoC family dehydratase N-terminal domain-containing protein n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BA47608)

HSP 1 Score: 171 bits (434), Expect = 9.690e-51
Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    4 PALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFPKPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVECWRKPDSVAFRARVPERGVTVLSHGHADI 384
            PA    P+  PD VI + TR D A+LYRLSGD NPLH DP +A +AGFP+PILHGLA+YG ACR L+  FCD +P+RLK++R RMS+PVFPG+TIR+ECWR  D +AF+ARV ER   VLSHG A I
Sbjct:  161 PAPTPVPERTPDRVITLPTRPDQAVLYRLSGDLNPLHIDPALAARAGFPRPILHGLASYGFACRGLVEAFCDGEPSRLKAIRARMSAPVFPGDTIRLECWRLDDRIAFQARVVEREALVLSHGWATI 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2R424_9BURK4.040e-7683.973-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
A0A6P2F1B6_9BURK6.020e-6172.66Enoyl reductase domain of yeast-type FAS1 n=1 Tax=... [more]
UPI00131D95051.520e-6073.44MaoC family dehydratase N-terminal domain-containi... [more]
A0A0K8P686_IDESA1.300e-5668.75Dehydrogenase with different specificities n=1 Tax... [more]
A0A6P1J0Q3_9BURK2.750e-5666.673-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
A0A120D7X9_9BURK9.260e-5263.57MaoC-like dehydratase n=3 Tax=unclassified Variovo... [more]
M4Z5E0_9BRAD1.210e-5168.07MaoC-like dehydratase n=4 Tax=Bradyrhizobium TaxID... [more]
UPI001FFB743E4.840e-5165.35MaoC family dehydratase N-terminal domain-containi... [more]
A0A244E5M9_9BURK5.400e-5162.023-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
UPI001BA476089.690e-5162.99MaoC family dehydratase N-terminal domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10127contigP-wetherbeei_contig10127:2..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1245469.S58_21450
PFAMsMaoC_dehydrat_N,MaoC_dehydratas
Model size396
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.98e-52
EggNOG OGsCOG2030@1|root,COG2030@2|Bacteria,1MUR2@1224|Proteobacteria,2TUM7@28211|Alphaproteobacteria,3JR27@41294|Bradyrhizobiaceae
DescriptionN-terminal half of MaoC dehydratase
Cds size396
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.7980504-CDS-P-wetherbeei_contig10127:1..3971683185855.7980504-CDS-P-wetherbeei_contig10127:1..397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10127 2..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10127.1.1prot_P-wetherbeei_contig10127.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10127 2..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10127.1.1

>prot_P-wetherbeei_contig10127.1.1 ID=prot_P-wetherbeei_contig10127.1.1|Name=mRNA_P-wetherbeei_contig10127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
GPALGATPDSEPDCVIDVATRADAALLYRLSGDFNPLHADPDVATKAGFP
KPILHGLATYGVACRALMAEFCDNDPARLKSMRTRMSSPVFPGETIRVEC
WRKPDSVAFRARVPERGVTVLSHGHADISFS*
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mRNA from alignment at P-wetherbeei_contig10127:2..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10127.1.1 ID=mRNA_P-wetherbeei_contig10127.1.1|Name=mRNA_P-wetherbeei_contig10127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig10127:2..397+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCCCGCGCTGGGTGCCACGCCCGACAGCGAGCCCGACTGCGTGATCGA CGTGGCCACGCGTGCCGATGCGGCCTTGCTGTACCGGCTCTCTGGCGACT TCAATCCCCTGCATGCGGACCCGGACGTGGCGACCAAAGCAGGATTCCCC AAGCCTATCCTGCACGGCCTGGCCACCTATGGTGTGGCCTGCCGCGCTCT CATGGCCGAGTTCTGCGACAACGACCCTGCGCGACTGAAATCGATGCGCA CCCGGATGTCCTCGCCCGTGTTTCCGGGCGAGACGATCCGCGTTGAATGC TGGCGCAAGCCCGACAGCGTGGCCTTCCGGGCGCGCGTGCCCGAGCGCGG CGTGACAGTGCTCTCCCATGGTCATGCCGACATTTCATTCTCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10127:2..397+

>mRNA_P-wetherbeei_contig10127.1.1 ID=mRNA_P-wetherbeei_contig10127.1.1|Name=mRNA_P-wetherbeei_contig10127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig10127:2..397+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCCCGCGCTGGGTGCCACGCCCGACAGCGAGCCCGACTGCGTGATCGA
CGTGGCCACGCGTGCCGATGCGGCCTTGCTGTACCGGCTCTCTGGCGACT
TCAATCCCCTGCATGCGGACCCGGACGTGGCGACCAAAGCAGGATTCCCC
AAGCCTATCCTGCACGGCCTGGCCACCTATGGTGTGGCCTGCCGCGCTCT
CATGGCCGAGTTCTGCGACAACGACCCTGCGCGACTGAAATCGATGCGCA
CCCGGATGTCCTCGCCCGTGTTTCCGGGCGAGACGATCCGCGTTGAATGC
TGGCGCAAGCCCGACAGCGTGGCCTTCCGGGCGCGCGTGCCCGAGCGCGG
CGTGACAGTGCTCTCCCATGGTCATGCCGACATTTCATTCTCTTGA
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