mRNA_P-wetherbeei_contig1011.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1011.5.1
Unique NamemRNA_P-wetherbeei_contig1011.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1011.5.1 vs. uniprot
Match: A0A835ZEX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.650e-32
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  540 LSMKWDGKSAPKPNPKREDLRADASWSREDDRVDVFEDKPNPTFNWWEAYFPSEEEMEAAAAGYDFSNPEAWLEKQK 770
            LSMKWDGKS PK NP  E L ADASW R++DRV+V+EDKPNPTF+W  AY P++EE EAAAAGYDF+NPEAWLEKQK
Sbjct:   41 LSMKWDGKSEPKKNPLLEQLAADASWDRQNDRVEVWEDKPNPTFDWISAYLPTDEEREAAAAGYDFANPEAWLEKQK 117
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BLAST of mRNA_P-wetherbeei_contig1011.5.1 vs. uniprot
Match: A0A6V1PLK3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PLK3_HETAK)

HSP 1 Score: 117 bits (292), Expect = 3.520e-29
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 3 
Query:  546 MKWDGKSAPKPNPKREDLRADASWSREDDRVDVFEDKPNPTFNWWEAYFPSEEEMEAAAAGYDFSNPEAWLEKQKQ 773
            MKW G   PK NPKR++L  DASW+R D+RVDVFEDKPNPT+ WWE YFP+EEE+EAAA GYDF NPE WL + K+
Sbjct:   45 MKWPGDRPPKTNPKRKELLMDASWARADERVDVFEDKPNPTYPWWETYFPTEEEIEAAAQGYDFENPEKWLAENKK 120
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BLAST of mRNA_P-wetherbeei_contig1011.5.1 vs. uniprot
Match: A0A836CII1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.960e-22
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:  540 LSMKWDGKSAPKPNPKREDLRADASWSREDDRVDVFEDKPNPTFNWWEAYFPSEEEMEAAAAGYDFSNPEAW 755
            LSMKWDGKS PK NP  E L ADASW RE+DR +V+ED+PNP F+W  AY P++EE EAAAAGYDF++PE W
Sbjct:   40 LSMKWDGKSEPKKNPLLEKLSADASWDRENDRKEVWEDEPNPNFDWISAYLPTDEEREAAAAGYDFNDPEGW 111
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BLAST of mRNA_P-wetherbeei_contig1011.5.1 vs. uniprot
Match: A0A482SB97_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB97_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 5.760e-12
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3 
Query:  549 KWDGKSAPKPNPKREDLRADASWSREDDRVDVFEDKPNPTFNWWEAYFPSEEEMEAAAAGYDFSNPEAW 755
            KW G   P PN  + + R DA+W R   R +++EDK +P   WW A+ PSEE+++AAA G+DF+N E W
Sbjct:   14 KWPGNRPPMPNLGQLEQRMDATWGRGKFREEIWEDKGSPVNEWWVAFTPSEEQLQAAAQGFDFTNVEEW 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1011.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZEX8_9STRA4.650e-3275.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1PLK3_HETAK3.520e-2968.42Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A836CII1_9STRA2.960e-2268.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SB97_9ARCH5.760e-1246.38Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1011contigP-wetherbeei_contig1011:5366..6147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size782
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001450.1
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.2188346-UTR-P-wetherbeei_contig1011:5365..59101683185855.2188346-UTR-P-wetherbeei_contig1011:5365..5910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1011 5366..5910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.2269413-CDS-P-wetherbeei_contig1011:5910..61471683185855.2269413-CDS-P-wetherbeei_contig1011:5910..6147Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1011 5911..6147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1011.5.1prot_P-wetherbeei_contig1011.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1011 5911..6147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1011.5.1

>prot_P-wetherbeei_contig1011.5.1 ID=prot_P-wetherbeei_contig1011.5.1|Name=mRNA_P-wetherbeei_contig1011.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MKWDGKSAPKPNPKREDLRADASWSREDDRVDVFEDKPNPTFNWWEAYFP
SEEEMEAAAAGYDFSNPEAWLEKQKQSA*
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mRNA from alignment at P-wetherbeei_contig1011:5366..6147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1011.5.1 ID=mRNA_P-wetherbeei_contig1011.5.1|Name=mRNA_P-wetherbeei_contig1011.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=782bp|location=Sequence derived from alignment at P-wetherbeei_contig1011:5366..6147+ (Phaeothamnion wetherbeei SAG_119_79)
CAAAACCACAACTTGCTTCAACTCTTGTGATCCTTGGTTCATGCAGCTTC
CCTGTGGCGTGGGTTGGCCTTATTCTCGCCTCTTTGCGGTGCTGATGTCT
TATGTTCATCAGCCGCTTCTGTGTTGAACCGAGTTCAAAGACTGTCCAAG
TGTGGGGACTCCACGTGAAAGTTGATGTCGAAATCGCAGGATCTTACGCG
ATTCTCTGGTGCACGTGCCTCGCATTTACACGGCCTTACGCACTGGATTC
TCGTGCTGTTCCTTTCCATCGTCCCACAGGTCGAGAAACATGGTGCAGGC
ACAGGCAGCAGTTTTGGCTATTTGCTCCCTCACGGTAGCGCAAGCTTTCG
TGGTGGCACCAATGGGTGAGTTCTTGGGCATCCTTGCACCGCTTGCATTT
ACGCCCCGCGGCTGCCGAAGACTTATCCCACCCCCGTCTCTCAATCCGGT
CCTTCCTTTCTGCACGGCAACCAGGACTGAACCGCGCCCGGCCAGCGGCG
ACGGCTCGGCAGGCGGCGCCCTCATCACCCGCGGTATCTCTCTCGATGAA
GTGGGACGGCAAGTCGGCACCGAAGCCCAACCCGAAGCGTGAGGACCTGC
GCGCCGACGCATCGTGGTCGCGCGAGGACGACCGTGTCGACGTGTTTGAG
GACAAGCCCAACCCAACCTTCAACTGGTGGGAGGCATACTTCCCCAGCGA
GGAGGAAATGGAGGCGGCGGCGGCGGGCTACGACTTTAGCAACCCCGAGG
CGTGGCTCGAGAAGCAGAAGCAGTCGGCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1011:5366..6147+

>mRNA_P-wetherbeei_contig1011.5.1 ID=mRNA_P-wetherbeei_contig1011.5.1|Name=mRNA_P-wetherbeei_contig1011.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig1011:5366..6147+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTGGGACGGCAAGTCGGCACCGAAGCCCAACCCGAAGCGTGAGGA
CCTGCGCGCCGACGCATCGTGGTCGCGCGAGGACGACCGTGTCGACGTGT
TTGAGGACAAGCCCAACCCAACCTTCAACTGGTGGGAGGCATACTTCCCC
AGCGAGGAGGAAATGGAGGCGGCGGCGGCGGGCTACGACTTTAGCAACCC
CGAGGCGTGGCTCGAGAAGCAGAAGCAGTCGGCGTAG
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