mRNA_P-wetherbeei_contig101.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig101.5.1
Unique NamemRNA_P-wetherbeei_contig101.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig101.5.1 vs. uniprot
Match: A0A1E3J022_9TREE (MULE domain-containing protein n=1 Tax=Cryptococcus wingfieldii CBS 7118 TaxID=1295528 RepID=A0A1E3J022_9TREE)

HSP 1 Score: 60.1 bits (144), Expect = 8.160e-6
Identity = 42/136 (30.88%), Postives = 65/136 (47.79%), Query Frame = 1 
Query:  112 PVYCLDGTHMKHKQNKLQVLILEGTDGAGKSVLVCMCICMSEDAYNCHWMLQELKKVPKLQALLEAPGTVIMSDRGTAIVPAVAAALPNALHVHCTVHMLRNVDAYLKKNRHQKLTPPLKSAVWGAQAAPTEQEFR 519
            P+  +DG H K   + +  L +  +D   +SV +      +E   +  W L  L         L++ GTVIMSDRG  +VPA++  LP A+  HC VH++RNV         ++     K  +W    A T +EF+
Sbjct:  275 PLVSVDGAHSKSCHDYVLFLAV-ASDANKQSVTLAWGHAKTEKRESWEWFLSRLSDC---YPGLDSKGTVIMSDRGKGLVPAISNVLPLAIPSHCAVHLIRNVRNRKHIGSTKEAVNIFKKMIW----AETPEEFQ 402
[Close]
BLAST of mRNA_P-wetherbeei_contig101.5.1 vs. uniprot
Match: A0A0L1KN74_9EUGL (Mutatorlike transposase n=2 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KN74_9EUGL)

HSP 1 Score: 56.6 bits (135), Expect = 4.190e-5
Identity = 35/114 (30.70%), Postives = 53/114 (46.49%), Query Frame = 1 
Query:  235 EDAYNCHWMLQELKKVPKLQALLEAPGTVIMSDRGTAIVPAVAAALPNALHVHCTVHMLRNVDAYLKKNRHQKLTPPLKSAVWGAQAAPTEQEFRAIMATIAVDVPGKHGSVAH 576
            E A++  + L++    P L++ L +P  V MSDR   I+       PNALH HCT H++ N         H  L       +WG QA+ TE ++   +A +    P     +AH
Sbjct:   42 ERAFDIWFGLKDSSGQPILRSWLNSPDHVQMSDRDKGIITMQKKLFPNALHFHCTEHIIDNCRKASTGKYHDGL-------IWGIQASKTEDKYNKNLANLRSKCPSAADYLAH 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig101.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1E3J022_9TREE8.160e-630.88MULE domain-containing protein n=1 Tax=Cryptococcu... [more]
A0A0L1KN74_9EUGL4.190e-530.70Mutatorlike transposase n=2 Tax=Perkinsela sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig101contigP-wetherbeei_contig101:8000..9819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog161934.XP_010680862.1
PFAMsMULE
Model size1576
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.19e-05
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota,37REV@33090|Viridiplantae,3GFBZ@35493|Streptophyta
Descriptionprotein FAR1-RELATED SEQUENCE
Cds size459
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.5179064-UTR-P-wetherbeei_contig101:7999..80891683185854.5179064-UTR-P-wetherbeei_contig101:7999..8089Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 8000..8089 +
1683185854.5258744-UTR-P-wetherbeei_contig101:8333..83811683185854.5258744-UTR-P-wetherbeei_contig101:8333..8381Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 8334..8381 +
1683185854.5402467-UTR-P-wetherbeei_contig101:8840..98191683185854.5402467-UTR-P-wetherbeei_contig101:8840..9819Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig101 8841..9819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.532957-CDS-P-wetherbeei_contig101:8381..88401683185854.532957-CDS-P-wetherbeei_contig101:8381..8840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig101 8382..8840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig101.5.1prot_P-wetherbeei_contig101.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig101 8382..8840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig101.5.1

>prot_P-wetherbeei_contig101.5.1 ID=prot_P-wetherbeei_contig101.5.1|Name=mRNA_P-wetherbeei_contig101.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MKHKQNKLQVLILEGTDGAGKSVLVCMCICMSEDAYNCHWMLQELKKVPK
LQALLEAPGTVIMSDRGTAIVPAVAAALPNALHVHCTVHMLRNVDAYLKK
NRHQKLTPPLKSAVWGAQAAPTEQEFRAIMATIAVDVPGKHGSVAHNVCP
VV*
back to top

mRNA from alignment at P-wetherbeei_contig101:8000..9819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig101.5.1 ID=mRNA_P-wetherbeei_contig101.5.1|Name=mRNA_P-wetherbeei_contig101.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1820bp|location=Sequence derived from alignment at P-wetherbeei_contig101:8000..9819+ (Phaeothamnion wetherbeei SAG_119_79)
GATGCGAACCCTACCAGCCACACGGCGTTCAAGGTCAACTCGGCGGGTCG
CTTCGACGCCGCCCTTATCGTTCTCCCTCGGGCCGCTGAGGTGCGTTTCT
CTCTTTGAGGCGGGAGCTTGGTTCCCCCCTTTTGTTCCTTTTTCGGGAGT
TTTTCTCGCTGTTGCCCCCTACCTTCTTCCTTCTCAGCATTTTGGTGTCT
TAGTACCTGCTTCGCGCATCTCACCAGTGAATCTGTCCTTTTTGGTGAGG
ATTTTGGGAGGTTGGGAGTCTCTTTTAAAGCCAGGGTTTTCGCCTTTGTC
TCGCTTTCCTTTCTTTGTTCTGCCTGTTACGAAGGTGCTGGAGAACGTCG
GGGTTCCCGTCTACTGCCTCGACGGGACGCACATGAAGCACAAGCAAAAC
AAGCTGCAGGTGCTTATCCTTGAGGGGACTGACGGTGCTGGCAAAAGCGT
CCTGGTGTGCATGTGCATCTGCATGTCGGAGGACGCCTACAACTGCCACT
GGATGTTACAGGAGCTCAAGAAGGTGCCAAAGCTGCAGGCGCTTTTGGAG
GCCCCGGGGACCGTCATCATGAGTGACCGCGGTACTGCTATTGTCCCGGC
AGTGGCGGCGGCACTGCCAAATGCGCTGCACGTGCACTGCACCGTGCACA
TGCTCCGCAACGTTGACGCGTACCTCAAGAAGAACCGGCACCAGAAGCTC
ACGCCACCGCTGAAGTCGGCGGTGTGGGGAGCGCAAGCGGCACCGACCGA
GCAGGAGTTCCGGGCCATCATGGCCACCATCGCGGTGGACGTTCCGGGTA
AGCATGGCTCTGTCGCCCATAATGTTTGCCCTGTTGTCTAAGGACTTGAA
AAGTTTGTATTTGGGTCTGCCTTTCAGATCGTAGTCATTTACGTCACTTC
TTCCGGCCATCGGGTTGCTGGTTGCTTGAAAAGAAATGCAAGGACTCGCC
CCGTTTCCCTTTCTCCATGCTTTTTCTCTCTTTCGCGGCTGGCTTGCTGT
CTTCCGTTGAGAGTTCTGAATTCCGTATTCTTCTTTCTTTGTTGCACATT
TCTTAACGTGCAAAACATATCAGCGGCGCATGAGTACCTCACCCTGAAGA
CGGATGTGCGTACTTGGGCCGTGTGCTACGCGCAAGAACGCGGCTACAAG
CTCTTCGGCATCCGAAGCAACAACCCTGTGGAGGGGGAGAATGGGCGCAT
CAAGCCCGCACGCTTCATGGCGCCTCTGTCATGCTTGAAGGAGGTGCTTG
AGATGGAGATGCGGCGGTACCATGAGCGCGCGATAGAGGTTGACAAGTGG
CGCCGCAATGGCTTTGTCATCACAATGAGGGCCAACAAGTTGTATGCAGC
CGAAGAGGTGCGTGTTCTGCTTTGGCTACAGTAAGGCGTTTCCCTAGACC
ATATGGCTGGTGCCCTCGAGATTTCTTTGCGTCGGCCTGATGCTTTCTCG
TTGGATCTTGTTCCTGTTTTCAAATTCACATTCCCGAACCGGGCAGCCTG
TAGTATCCTGAGTCTTACCAGACCACGGTGGTCACTTCGAAAAGAGGAAG
GGAAATTGTGTTCATCAGAAACCGGCCATTATGAGACACGTTTACAACCT
CCGCCTCAGTCCTTCTTGCTTTTCTTTCTGACTTACTTGTTTGTTGTCTT
AACCTTAGTTGGGCTTATTTTTGTCATTTCTGACATCTTTCCTTCTGTTT
CCTTCTTCTTTTGCCTGCCACCGGCGCTCGACAGGCCCGCTCAAGGGCAT
ACAGTGCAAGGCCGTCCTCTAAGAGCATCTACTTCGTGTCGCAGCGTGGG
ATCCAGGCAGTGGACCCCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig101:8000..9819+

>mRNA_P-wetherbeei_contig101.5.1 ID=mRNA_P-wetherbeei_contig101.5.1|Name=mRNA_P-wetherbeei_contig101.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig101:8000..9819+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCACAAGCAAAACAAGCTGCAGGTGCTTATCCTTGAGGGGACTGA
CGGTGCTGGCAAAAGCGTCCTGGTGTGCATGTGCATCTGCATGTCGGAGG
ACGCCTACAACTGCCACTGGATGTTACAGGAGCTCAAGAAGGTGCCAAAG
CTGCAGGCGCTTTTGGAGGCCCCGGGGACCGTCATCATGAGTGACCGCGG
TACTGCTATTGTCCCGGCAGTGGCGGCGGCACTGCCAAATGCGCTGCACG
TGCACTGCACCGTGCACATGCTCCGCAACGTTGACGCGTACCTCAAGAAG
AACCGGCACCAGAAGCTCACGCCACCGCTGAAGTCGGCGGTGTGGGGAGC
GCAAGCGGCACCGACCGAGCAGGAGTTCCGGGCCATCATGGCCACCATCG
CGGTGGACGTTCCGGGTAAGCATGGCTCTGTCGCCCATAATGTTTGCCCT
GTTGTCTAA
back to top