mRNA_P-wetherbeei_contig1009.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1009.6.1
Unique NamemRNA_P-wetherbeei_contig1009.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A836CLB5_9STRA (DUF1279 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.460e-24
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLL-AADVPPGGAEV--RLQRLIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVR 303
            K +WRRYGLVAVGTY G+Y+ TLGG++L++D+G + A+D+P G A     LQ L+         LP  WAQ  ++ L+ +  ++P  R+F LAW+TTK+TEPVR
Sbjct:    2 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALV-------ERLPD-WAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVR 97          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A024U3G7_9STRA (DUF1279 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3G7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.960e-12
Identity = 38/104 (36.54%), Postives = 53/104 (50.96%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVRLQRLIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LW +YG V VGTYLG+Y+VTLG +F+  + G+L+   P    +   +   F    A + L       GL    +     P    F +AW+ TK TEPVR +V
Sbjct:   68 KDLWNKYGWVGVGTYLGVYVVTLGSMFVAIETGVLSTAAPSKATDSEDKNEAFNIVTATNKLTEWTKSIGLGAHFNVPDVSPTTGTFLIAWVATKFTEPVRLAV 171          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A6G0XBM3_9STRA (DUF1279 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBM3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.810e-11
Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVRLQRLIFGAFLACSALPAL--WAQR-GLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LW +YG V VGTYL +Y+ TLG +F+  + GL++   P  G          G+F   SA  AL  W +  GL    +     P    F +AW+ TK TEP+R +V
Sbjct:   69 KELWNKYGWVGVGTYLSVYVTTLGSMFVAIETGLISTGAPKEGESEDGN----GSFNIVSATNALTEWTKSVGLGSHFNVPEVSPATGSFLIAWVATKFTEPIRLAV 171          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: F0W5K2_9STRA (Uncharacterized protein AlNc14C21G2167 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-10
Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVRLQR---LIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LWR+YGLVA+GTY  MY + LG I++  ++GL++ +       VR  +     F      + + AL    GL +  D    + +   F +AW+ TK TEP+R ++
Sbjct:    7 KDLWRKYGLVAIGTYFTMYGIVLGTIYISIENGLISKN-----RNVRSNKDTTTDFDVVSTTNKMIALAEDYGLAKYLDVERVNSKTGSFVIAWVATKFTEPIRLAI 108          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A024GSA6_9STRA (DUF1279 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSA6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.120e-10
Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVRLQR---LIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LWR+YGLVA+GTY  MY + LG I++  ++GL++ +        RL +     F      + + AL    GL +  D    + +   F +AW+ TK TEP+R ++
Sbjct:   65 KDLWRKYGLVAIGTYFTMYGIVLGSIYISIENGLISKN-----RNTRLNKDTTTNFDVVSTTNKMIALAEDYGLVKYLDVERVNSKTGSFVIAWVATKFTEPIRLAI 166          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A397F748_9STRA (DUF1279 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F748_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.230e-10
Identity = 38/105 (36.19%), Postives = 50/105 (47.62%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVR-LQRLIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LW  YG V VGTYLG+Y+VTLG +F   + GLL+   P    +        F    A + L       GL    +     P    F +AW+ TK TEPVR ++
Sbjct:   38 KDLWNTYGWVGVGTYLGVYVVTLGSMFAAIETGLLSTAAPSNKDDTNGSDDESFNIVKATNKLTDWTKSMGLGAHFNVPDVSPTTGSFLIAWVATKFTEPVRLAM 142          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: K3WLD2_GLOUD (DUF1279 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLD2_GLOUD)

HSP 1 Score: 62.8 bits (151), Expect = 1.780e-9
Identity = 35/105 (33.33%), Postives = 50/105 (47.62%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLL-AADVPPGGAEVRLQRLIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LWR+YG+VA+GTY  MY + LG I++  D G +  A    G          F    A +         G+ +  +    + +   F LAW+ TK TEPVR +V
Sbjct:  122 KDLWRKYGIVAIGTYFSMYGIVLGSIYVAIDQGWVRTAKTSRGSDSDNADNNDFNVVTATNKFVTFAEDLGVAKYLEVERVNAKTGTFLLAWVATKFTEPVRLAV 226          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A485KD91_9STRA (Aste57867_2662 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KD91_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.420e-9
Identity = 39/108 (36.11%), Postives = 54/108 (50.00%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLL----AADVPPGGAEVRLQRLIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LW +YG V VGTYL +Y+ TLG +F+  + GLL    AA    GG +   +   F    A ++L       GL    +     P    F +AW+ TK TEP+R +V
Sbjct:   67 KELWNKYGWVGVGTYLSVYVTTLGTMFVAIETGLLSTGPAAASADGGDDKEDEG--FNIVTATNSLTEWTKSVGLGAHFNVPEVSPTTGTFLIAWVATKFTEPIRLAV 172          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A3R7J9G6_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9G6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.060e-9
Identity = 33/104 (31.73%), Postives = 50/104 (48.08%), Query Frame = 1
Query:    1 KMLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVRLQRLIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            K LWR+YG+VA+GTYL +Y   LG I++  D G +         E + +   F      +         G+ +  +    + +   F LAW+ TK TEPVR +V
Sbjct:    8 KDLWRKYGIVAIGTYLSLYGAVLGSIYVAIDQGWVRTSKRRSSREGQEES--FNLITTTNKFVKFAEDMGIAQYLEVERVNSKTGSFLLAWVATKFTEPVRLAV 109          
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Match: A0A7S0L5M9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5M9_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 5.970e-9
Identity = 35/100 (35.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:   13 RRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVRLQRLIFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVRFSV 312
            + YG + +G Y G+Y+ TLG +FL  D GLL     P G  + + R +                 G DRL D    +P+  +FA+AWI  K TEP+R  V
Sbjct:  112 KEYGALGIGVYAGVYLSTLGSLFLAVDCGLL-----PAGDALSMLRSV-----------------GADRLFDLDKLNPKTSNFAIAWILAKFTEPLRMLV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1009.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLB5_9STRA4.460e-2448.08DUF1279 domain-containing protein (Fragment) n=1 T... [more]
A0A024U3G7_9STRA1.960e-1236.54DUF1279 domain-containing protein n=2 Tax=Aphanomy... [more]
A0A6G0XBM3_9STRA5.810e-1137.38DUF1279 domain-containing protein n=1 Tax=Aphanomy... [more]
F0W5K2_9STRA1.010e-1033.64Uncharacterized protein AlNc14C21G2167 n=1 Tax=Alb... [more]
A0A024GSA6_9STRA1.120e-1033.64DUF1279 domain-containing protein n=1 Tax=Albugo c... [more]
A0A397F748_9STRA5.230e-1036.19DUF1279 domain-containing protein n=4 Tax=Aphanomy... [more]
K3WLD2_GLOUD1.780e-933.33DUF1279 domain-containing protein n=1 Tax=Globispo... [more]
A0A485KD91_9STRA3.420e-936.11Aste57867_2662 protein n=1 Tax=Aphanomyces stellat... [more]
A0A3R7J9G6_9STRA5.060e-931.73DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
A0A7S0L5M9_9EUKA5.970e-935.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1009contigP-wetherbeei_contig1009:6614..7433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008870915.1
PFAMsDUF1279
Model size333
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue6.13e-13
EggNOG OGs2CK7H@1|root,2S0QZ@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-10_004940.1
DescriptionProtein of unknown function (DUF1279)
Cds size330
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.1350489-UTR-P-wetherbeei_contig1009:6613..66161683185854.1350489-UTR-P-wetherbeei_contig1009:6613..6616Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1009 6614..6616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.1455822-CDS-P-wetherbeei_contig1009:6616..68081683185854.1455822-CDS-P-wetherbeei_contig1009:6616..6808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1009 6617..6808 +
1683185854.1545146-CDS-P-wetherbeei_contig1009:7295..74331683185854.1545146-CDS-P-wetherbeei_contig1009:7295..7433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1009 7296..7433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1009.6.1prot_P-wetherbeei_contig1009.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1009 6617..7433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1009.6.1

>prot_P-wetherbeei_contig1009.6.1 ID=prot_P-wetherbeei_contig1009.6.1|Name=mRNA_P-wetherbeei_contig1009.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MLWRRYGLVAVGTYLGMYMVTLGGIFLIYDHGLLAADVPPGGAEVRLQRL
IFGAFLACSALPALWAQRGLDRLHDRFMEDPRARHFALAWITTKLTEPVR
FSVCPFVSFR
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mRNA from alignment at P-wetherbeei_contig1009:6614..7433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1009.6.1 ID=mRNA_P-wetherbeei_contig1009.6.1|Name=mRNA_P-wetherbeei_contig1009.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=820bp|location=Sequence derived from alignment at P-wetherbeei_contig1009:6614..7433+ (Phaeothamnion wetherbeei SAG_119_79)
AAGATGCTGTGGCGGCGCTACGGCCTCGTGGCGGTGGGCACGTATCTGGG CATGTACATGGTGACGTTGGGCGGGATATTTCTAATCTACGACCACGGGC TGCTCGCCGCCGATGTGCCTCCCGGCGGCGCCGAGGTGAGACTGCAGAGG CTCATATTTGGCGCTTTCCTTGCTTGTTCTGCGTTGCCAGCTCTTGTCGT TTGGAGCAGATGTTTTCTGGCTGGCTGGATCACGCGGAGTCGAGAATTAC TACCCTTTCAGAAGTGACGTTGTTTGTTCGTTTCTTCGCTTGAGTAATTT TCGCCGCCCCGCTCTGGGGTCCACAGTGGTCGTTCTGCCTGGAATTTCTT TGCTTCGGCTTGTCCTATCAAATCCGTTTCTGCCCTGTTTGGCAGCCAAA TGTTCATTTTCAATCCCTCGCATCAACAGCTGCAGGCTGCGCGCCGAAAC TGCCTGCTGCTCTCCTTGTTGCCCGTGACATCACCGCCATAGCCTCTTTG CGCCGCCGCTGTGCCGCCGCTGACCACTGTCTTGACGCAACTATTTCTCT CGCCCACGCCACTGCCACCGCCGCCGGTACTTCCGCCGCTCCCGCTTCTG CTTTCTTCCTTCGTTCCACGCTCCCCTCGTGTTTGCGCAGGTAGTGGAGC ACCTGCGGGCAATGCTGTCCTTCCTGCCCGAGTGGGCGCAGCGCGGCCTC GACCGCCTGCACGACCGCTTCATGGAGGACCCGCGGGCGCGCCACTTTGC GCTCGCCTGGATCACCACAAAGCTCACCGAGCCCGTGCGTTTCTCCGTTT GTCCTTTCGTCTCGTTTCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1009:6614..7433+

>mRNA_P-wetherbeei_contig1009.6.1 ID=mRNA_P-wetherbeei_contig1009.6.1|Name=mRNA_P-wetherbeei_contig1009.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig1009:6614..7433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTGGCGGCGCTACGGCCTCGTGGCGGTGGGCACGTATCTGGGCAT
GTACATGGTGACGTTGGGCGGGATATTTCTAATCTACGACCACGGGCTGC
TCGCCGCCGATGTGCCTCCCGGCGGCGCCGAGGTGAGACTGCAGAGGCTC
ATATTTGGCGCTTTCCTTGCTTGTTCTGCGTTGCCAGCTCTTTGGGCGCA
GCGCGGCCTCGACCGCCTGCACGACCGCTTCATGGAGGACCCGCGGGCGC
GCCACTTTGCGCTCGCCTGGATCACCACAAAGCTCACCGAGCCCGTGCGT
TTCTCCGTTTGTCCTTTCGTCTCGTTTCGA
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