mRNA_P-wetherbeei_contig10089.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10089.1.1
Unique NamemRNA_P-wetherbeei_contig10089.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10089.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10089contigP-wetherbeei_contig10089:1355..2330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI51114
PFAMsEF-hand_5,HELP,WD40
Model size606
Max annot lvl4776|Peronosporales
KEGG koko:K18598
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.7e-05
EggNOG OGsCOG2319@1|root,KOG2106@2759|Eukaryota,3Q80F@4776|Peronosporales
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_005410.1
Descriptionmicrotubule binding
Cds size459
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.9395554-CDS-P-wetherbeei_contig10089:1354..15141683185853.9395554-CDS-P-wetherbeei_contig10089:1354..1514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10089 1355..1514 -
1683185853.9481971-CDS-P-wetherbeei_contig10089:1683..17981683185853.9481971-CDS-P-wetherbeei_contig10089:1683..1798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10089 1684..1798 -
1683185853.9550853-CDS-P-wetherbeei_contig10089:1895..19711683185853.9550853-CDS-P-wetherbeei_contig10089:1895..1971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10089 1896..1971 -
1683185853.9622488-CDS-P-wetherbeei_contig10089:2075..21831683185853.9622488-CDS-P-wetherbeei_contig10089:2075..2183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10089 2076..2183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.9693549-UTR-P-wetherbeei_contig10089:2183..23301683185853.9693549-UTR-P-wetherbeei_contig10089:2183..2330Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10089 2184..2330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10089.1.1prot_P-wetherbeei_contig10089.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10089 1355..2183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10089.1.1

>prot_P-wetherbeei_contig10089.1.1 ID=prot_P-wetherbeei_contig10089.1.1|Name=mRNA_P-wetherbeei_contig10089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MGSALAKQSDKAFAARPENPCAWNASHVTSLHDVYKRGNHDWAITRIELE
AMISEFAPESLGKGFEETLWGAIGKSKTQETLFSLEAFLFLAFVCRGTIR
DKASLAFGFVDFDGEGMATYDEIALLLLTAIAVLPAAAAFVAAAAPHTPP
PER
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mRNA from alignment at P-wetherbeei_contig10089:1355..2330-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10089.1.1 ID=mRNA_P-wetherbeei_contig10089.1.1|Name=mRNA_P-wetherbeei_contig10089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=976bp|location=Sequence derived from alignment at P-wetherbeei_contig10089:1355..2330- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAATAAAACGTCGAAACCTGCAGGTGAAACGTATTTCTCAATTCAG
GGAAGAGGGGGAAACGGAATAGGAACTTTAAATACATAGTTTGTCGCGGA
AACCCTTCTAGATAGGGAGAGGAAGAGCGAAAGGTATAAAAAAAGCAATG
GGGTCGGCCCTCGCGAAACAAAGCGACAAGGCCTTTGCCGCAAGACCGGA
GAATCCGTGTGCATGGAATGCCTCACACGTCACGAGCCTCCACGATGTGT
ACAAAGTCAGTCATGCGATGGATTTCGTGATAGAAACACTGCAATGTAAC
AACATCAGGCCGCCCTTGTTTCTCGCTTCCACCCTTCCTCTTGTGTCAAC
TTCCACCAGAGAGGAAACCATGATTGGGCTATCACCCGGATAGAATTGGA
AGCGATGATCAGCGAATTTGCCCCTGAATCTCTAGGTGAGCGACGTGCTC
GCAAAGTTTGCGCACAGCCGAAGAAAATGAATCAAGCAAAGTGTCACGCC
TTTACCGTTGTTCCTCGCTGTTCACCCACCAGGCAAAGGCTTTGAGGAGA
CCCTGTGGGGCGCCATCGGCAAAAGCAAGACTCAGGAAACGTTATTCTCT
CTGGAAGCCTTCCTCTTCCTGGCCTTTGTCTGCCGTGGCACCATCAGGTG
AGAAAGGCGCGTATCACTTATGCACAGCGCTGCTTGCTACTGCAATCCTC
GGTAGACTGTGAAAGGCGCTTTACCTTTCGCATTCCCAGGGGTTCTCTCC
AAGGTCACCCACGCGAGCTATGCACTCGCTGCCTTTTGTATTCTCTTCTA
TTCTTTGCTCCGCCAGAGACAAGGCGTCGCTTGCCTTCGGATTCGTGGAC
TTCGACGGGGAGGGAATGGCGACATACGACGAGATCGCATTGCTACTTTT
GACTGCCATCGCCGTACTCCCAGCAGCTGCTGCGTTTGTAGCGGCGGCTG
CTCCGCATACGCCGCCTCCGGAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10089:1355..2330-

>mRNA_P-wetherbeei_contig10089.1.1 ID=mRNA_P-wetherbeei_contig10089.1.1|Name=mRNA_P-wetherbeei_contig10089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig10089:1355..2330- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGTCGGCCCTCGCGAAACAAAGCGACAAGGCCTTTGCCGCAAGACC
GGAGAATCCGTGTGCATGGAATGCCTCACACGTCACGAGCCTCCACGATG
TGTACAAAAGAGGAAACCATGATTGGGCTATCACCCGGATAGAATTGGAA
GCGATGATCAGCGAATTTGCCCCTGAATCTCTAGGCAAAGGCTTTGAGGA
GACCCTGTGGGGCGCCATCGGCAAAAGCAAGACTCAGGAAACGTTATTCT
CTCTGGAAGCCTTCCTCTTCCTGGCCTTTGTCTGCCGTGGCACCATCAGA
GACAAGGCGTCGCTTGCCTTCGGATTCGTGGACTTCGACGGGGAGGGAAT
GGCGACATACGACGAGATCGCATTGCTACTTTTGACTGCCATCGCCGTAC
TCCCAGCAGCTGCTGCGTTTGTAGCGGCGGCTGCTCCGCATACGCCGCCT
CCGGAGCGG
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