mRNA_P-wetherbeei_contig10084.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10084.1.1
Unique NamemRNA_P-wetherbeei_contig10084.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10084.1.1 vs. uniprot
Match: A0A2Z6SP10_9GLOM (DUF659 domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6SP10_9GLOM)

HSP 1 Score: 51.6 bits (122), Expect = 4.490e-6
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    7 FLADLFSKMIDKVGVKKVAAICTDGASAITKGRSDLVKIPKYPHIIDLRCQMHAFNLV 180
            FLAD  S +I+K G++K AA   D  S   + R  + +   YP+IID+RC +HA NL+
Sbjct:  291 FLADQVSSIIEKTGMEKFAAFVIDSGSNCRRAREIIERT--YPYIIDMRCAVHAINLI 346
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10084.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z6SP10_9GLOM4.490e-643.10DUF659 domain-containing protein n=1 Tax=Rhizophag... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10084contigP-wetherbeei_contig10084:669..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size180
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.9093795-UTR-P-wetherbeei_contig10084:668..6981683185853.9093795-UTR-P-wetherbeei_contig10084:668..698Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10084 669..698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.917074-CDS-P-wetherbeei_contig10084:698..8481683185853.917074-CDS-P-wetherbeei_contig10084:698..848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10084 699..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10084.1.1prot_P-wetherbeei_contig10084.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10084 699..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10084.1.1

>prot_P-wetherbeei_contig10084.1.1 ID=prot_P-wetherbeei_contig10084.1.1|Name=mRNA_P-wetherbeei_contig10084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
MIDKVGVKKVAAICTDGASAITKGRSDLVKIPKYPHIIDLRCQMHAFNLV
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mRNA from alignment at P-wetherbeei_contig10084:669..848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10084.1.1 ID=mRNA_P-wetherbeei_contig10084.1.1|Name=mRNA_P-wetherbeei_contig10084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig10084:669..848+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCGTTTTTGGCAGATCTCTTCTCCAAGATGATCGACAAGGTCGGCGT
CAAAAAAGTCGCTGCCATTTGCACCGACGGCGCCTCGGCAATAACCAAGG
GGCGCTCGGACTTGGTGAAGATCCCCAAGTACCCCCACATTATTGACCTC
CGCTGCCAAATGCATGCTTTCAATCTTGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10084:669..848+

>mRNA_P-wetherbeei_contig10084.1.1 ID=mRNA_P-wetherbeei_contig10084.1.1|Name=mRNA_P-wetherbeei_contig10084.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig10084:669..848+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACAAGGTCGGCGTCAAAAAAGTCGCTGCCATTTGCACCGACGG
CGCCTCGGCAATAACCAAGGGGCGCTCGGACTTGGTGAAGATCCCCAAGT
ACCCCCACATTATTGACCTCCGCTGCCAAATGCATGCTTTCAATCTTGTG
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