mRNA_P-wetherbeei_contig10082.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10082.2.1
Unique NamemRNA_P-wetherbeei_contig10082.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: A0A835ZFT6_9STRA (OsmC/Ohr family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.590e-23
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGR--WQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAMAGGITTSVM 321
            PSPKE+ LAGLA+CTSMT+R+YAD M   G   W+ G L  + V A E T  G H+PD + V + L     +  L+ +QR RL  AAERCPVKRM+ G +AGG+ ++++
Sbjct:   46 PSPKELVLAGLASCTSMTVRIYADNMFRRGAKGWESGRLDRVLVHAEEITRPGAHVPDCLEVRIAL-----EGDLTAEQRRRLAAAAERCPVKRMLTGGLAGGVASALV 149          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: L1K4L3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K4L3_GUITC)

HSP 1 Score: 86.3 bits (212), Expect = 1.600e-19
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAMAGGITTSVMLAD 330
            PSPK++ +AGLAACTSMTL+  A  M+ +G+ + G    I+V A + TPQG H+P  V++ + + +GS    LS  QR +LL AA+ CPVK+M+ G +  GI   V++ +
Sbjct:   13 PSPKDLVMAGLAACTSMTLQTRARTMIESGKMERGSFKRIDVHAYDSTPQGKHMPTRVNLKICV-TGS----LSAAQRRQLLAAADMCPVKQMLKGKVEEGIEVEVVVEE 117          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: A0A4D9D5R6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5R6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.700e-19
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAMAGGITTSVMLAD 330
            PSPKE AL  L++CT MT+RMY+D+M+ +G+W    +  + V  SE      H+P  + V ++LRS      L E+Q  RL+ AAE+CPVKRMM G +  GITT V++ D
Sbjct:   78 PSPKEYALVALSSCTLMTVRMYSDSMIKSGKWPGKSIEKLSVSCSEHGDDQ-HVPLNIQVELKLRSN-----LDEEQIKRLVAAAEKCPVKRMMKGGVKNGITT-VLVKD 180          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: W7TWS8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWS8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.750e-19
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAMAGGITTSVML 324
            PSPKE AL  L++CT MT+RMY+D+M+ +G+W    +  + V  SE      H+P  + V ++LRS      L E+Q  RL+ AAE+CPVKRMM G +  GITT +++
Sbjct:   78 PSPKEYALVALSSCTLMTVRMYSDSMIKSGKWPGKSIEKLSVSCSEHGDDQ-HVPLNIQVELKLRSN-----LDEEQIKRLVAAAEKCPVKRMMKGGVKNGITTVLVI 179          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: A0A7S0TVC2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TVC2_HEMAN)

HSP 1 Score: 78.6 bits (192), Expect = 5.870e-16
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAMAGGIT 309
            PSPK++A+A L ACTSMT++ +A  +V  G+ + G L  + V A + T  G H+P+ V V + L   ++   LS      L  AA +CPV+RM+ G M GGI+
Sbjct:   62 PSPKDLAMAALCACTSMTIQTFARGLVRTGKLEEGALSAVHVVAQDNTKVGQHMPESVDVGITLIGDTEA--LSPKVVRLLHTAASKCPVRRMLEGQMGGGIS 162          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: A0A2K1IXA3_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IXA3_PHYPA)

HSP 1 Score: 69.3 bits (168), Expect = 2.290e-12
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAMAGGIT 309
            P PK+ A AGLA C+S+T+R++A+      +W    + V   E SEK   G  +PDG+ +T+ L     +  LS+ Q+ RLL  + RCPVK+MM G M  GI+
Sbjct:   81 PEPKDYAFAGLAMCSSLTIRLFAERK----KWPLRRVSVTVKEVSEKDLHGT-IPDGLQMTISL-----EGDLSDAQKERLLEISARCPVKQMMLGKMRDGIS 173          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: UPI001CF815FC (OsmC family protein n=2 Tax=Dechloromonas TaxID=73029 RepID=UPI001CF815FC)

HSP 1 Score: 59.3 bits (142), Expect = 7.050e-9
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAM 294
            P+P +  ++GL ACTSMTLRMYA+      R      G+    + EK    G   D ++ T++L       PLS++QR RLL  A +CPV R + G++
Sbjct:   41 PAPFDFLMSGLGACTSMTLRMYAE------RKDLPLTGIHVELSHEKIEIDGSKRDQINRTIKL-----DGPLSQEQRQRLLEIAGKCPVHRALSGSI 127          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: UPI001E5FFDA7 (alpha/beta fold hydrolase n=1 Tax=Roseomonas sp. CECT 9278 TaxID=2845823 RepID=UPI001E5FFDA7)

HSP 1 Score: 59.7 bits (143), Expect = 4.130e-8
Identity = 44/99 (44.44%), Postives = 51/99 (51.52%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASE-KTP--QGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGG 288
            P P ++ LA L ACTSMTLRMYAD       W    L  +EVE    K P   G    D + + VRL       PL E QRARLL  A+ CPV R + G
Sbjct:  300 PGPYDLLLASLGACTSMTLRMYADRK----GWP---LEGVEVELDHAKVPATDGSGKADDIEIGVRLIG-----PLDEAQRARLLEIADHCPVHRTLEG 386          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: A0A6N7PZW2_9DELT (OsmC family peroxiredoxin n=1 Tax=Polyangium spumosum TaxID=889282 RepID=A0A6N7PZW2_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 6.700e-8
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGG 288
            P P E  LAGL ACTSMT++MYAD       W    L  +EV+ + +  +G          V  RS   Q  L+E+Q+ARLL  A +CPV +M+ G
Sbjct:   39 PDPFEFVLAGLGACTSMTIKMYADRK----GWP---LVSVEVDVAGEKREGAF--------VAKRSIRLQGDLTEEQQARLLDIANKCPVHKMLTG 119          
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Match: A0A432W9Y3_9GAMM (Osmotically inducible protein OsmC n=1 Tax=Aliidiomarina minuta TaxID=880057 RepID=A0A432W9Y3_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 8.320e-8
Identity = 37/98 (37.76%), Postives = 50/98 (51.02%), Query Frame = 1
Query:    1 PSPKEMALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLPDGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAM 294
            P+P EM LAGL ACT+MTLRMYA        W    + V    A  K   G       H+++       +  LS++QR RLL  A +CPV + + GA+
Sbjct:   46 PAPMEMVLAGLGACTTMTLRMYAKHK----DWPLDKVTVTLTHAKGKASDGKSDKFIRHISI-------EGDLSDEQRDRLLEIANKCPVHKTLSGAL 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10082.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFT6_9STRA1.590e-2348.62OsmC/Ohr family n=1 Tax=Tribonema minus TaxID=3033... [more]
L1K4L3_GUITC1.600e-1943.64Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A4D9D5R6_9STRA1.700e-1945.45Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TWS8_9STRA3.750e-1944.44Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0TVC2_HEMAN5.870e-1640.78Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A2K1IXA3_PHYPA2.290e-1240.78Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
UPI001CF815FC7.050e-937.76OsmC family protein n=2 Tax=Dechloromonas TaxID=73... [more]
UPI001E5FFDA74.130e-844.44alpha/beta fold hydrolase n=1 Tax=Roseomonas sp. C... [more]
A0A6N7PZW2_9DELT6.700e-840.63OsmC family peroxiredoxin n=1 Tax=Polyangium spumo... [more]
A0A432W9Y3_9GAMM8.320e-837.76Osmotically inducible protein OsmC n=1 Tax=Aliidio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10082contigP-wetherbeei_contig10082:1057..1851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S517_3V6.1
PFAMsOsmC
Model size333
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.95e-10
EggNOG OGsCOG1765@1|root,2SW6Y@2759|Eukaryota
DescriptionOsmC-like protein
Cds size318
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.81413-CDS-P-wetherbeei_contig10082:1056..12661683185853.81413-CDS-P-wetherbeei_contig10082:1056..1266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10082 1057..1266 -
1683185853.8222473-CDS-P-wetherbeei_contig10082:1728..18361683185853.8222473-CDS-P-wetherbeei_contig10082:1728..1836Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10082 1729..1836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.8294668-UTR-P-wetherbeei_contig10082:1836..18511683185853.8294668-UTR-P-wetherbeei_contig10082:1836..1851Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10082 1837..1851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10082.2.1prot_P-wetherbeei_contig10082.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10082 1057..1836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10082.2.1

>prot_P-wetherbeei_contig10082.2.1 ID=prot_P-wetherbeei_contig10082.2.1|Name=mRNA_P-wetherbeei_contig10082.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MALAGLAACTSMTLRMYADAMVAAGRWQPGCLGVIEVEASEKTPQGGHLP
DGVHVTVRLRSGSKQYPLSEDQRARLLRAAERCPVKRMMGGAMAGGITTS
VMLAD*
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mRNA from alignment at P-wetherbeei_contig10082:1057..1851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10082.2.1 ID=mRNA_P-wetherbeei_contig10082.2.1|Name=mRNA_P-wetherbeei_contig10082.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig10082:1057..1851- (Phaeothamnion wetherbeei SAG_119_79)
CCGTCCCCGAAGGAGATGGCGCTTGCGGGGCTGGCGGCGTGCACGTCCAT GACGCTGCGCATGTACGCTGACGCGATGGTCGCCGCCGGCCGATGGCAGC CCGGCTGCCTCGGTGTCATCGAGGTGCGGCCTGCTGGGCGGAGTGGTGAA CGAGACTTGGTGCAGCCAGTTTTCTGGAAGTTTCGCCTTTCTGCGTGGTT CAGGCGGATTTCCAGGGCTTCTCGGCGGTTTCTATGCGGAGTTGTAGCTA CGTGCCTTGTTACTACGCGGACGCGACGGCCGCCGTCGGACAAGTGCAGC GAGAGGCTGTCTCGGCGCTGTTTACTTGCAGCAGGTATTGCAAGACCTGT GAGCGGTTTTTGGCGGCGTCGTCTTCTATGTAACTGGTGTGTAACTCTTG AGGCTTTGGAGCCATGCATTACAATCGAGGAATGGGCACAAGGCTACATT CTTCCACTGGACGAATCTCAGCGGCACGTCTGCTTATGTCTCTTGGACGA CCCATCTCTTTCTGTCTCTCGTTTCCCTTTCGCCTCCCCATTTCCTTTGC CGTATCCCTTTCTTCAAACGGACGGCACCAACCAGGTGGAGGCGTCGGAG AAAACGCCCCAAGGAGGGCACCTGCCGGATGGTGTGCATGTGACGGTGCG GCTCCGTAGCGGGTCGAAACAGTACCCGCTGTCGGAGGATCAGCGCGCGC GGCTGCTGCGCGCCGCAGAACGCTGCCCCGTCAAGCGGATGATGGGCGGC GCCATGGCCGGCGGCATCACCACGTCGGTCATGCTGGCCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10082:1057..1851-

>mRNA_P-wetherbeei_contig10082.2.1 ID=mRNA_P-wetherbeei_contig10082.2.1|Name=mRNA_P-wetherbeei_contig10082.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig10082:1057..1851- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTTGCGGGGCTGGCGGCGTGCACGTCCATGACGCTGCGCATGTA
CGCTGACGCGATGGTCGCCGCCGGCCGATGGCAGCCCGGCTGCCTCGGTG
TCATCGAGGTGGAGGCGTCGGAGAAAACGCCCCAAGGAGGGCACCTGCCG
GATGGTGTGCATGTGACGGTGCGGCTCCGTAGCGGGTCGAAACAGTACCC
GCTGTCGGAGGATCAGCGCGCGCGGCTGCTGCGCGCCGCAGAACGCTGCC
CCGTCAAGCGGATGATGGGCGGCGCCATGGCCGGCGGCATCACCACGTCG
GTCATGCTGGCCGACTGA
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