mRNA_P-wetherbeei_contig10082.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10082.1.1
Unique NamemRNA_P-wetherbeei_contig10082.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10082contigP-wetherbeei_contig10082:135..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size683
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.7735326-UTR-P-wetherbeei_contig10082:134..2201683185853.7735326-UTR-P-wetherbeei_contig10082:134..220Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10082 135..220 +
1683185853.7898622-UTR-P-wetherbeei_contig10082:667..8171683185853.7898622-UTR-P-wetherbeei_contig10082:667..817Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10082 668..817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.7824788-CDS-P-wetherbeei_contig10082:220..6671683185853.7824788-CDS-P-wetherbeei_contig10082:220..667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10082 221..667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10082.1.1prot_P-wetherbeei_contig10082.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10082 221..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10082.1.1

>prot_P-wetherbeei_contig10082.1.1 ID=prot_P-wetherbeei_contig10082.1.1|Name=mRNA_P-wetherbeei_contig10082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MTTATITTVTMMTELQQRRRRRIVTVANKLVITTATATVTNENGYSGKWP
RAAATAAAIAAALLPFHVRVYLFRQIVVAVDTAQRLERNGWAKRARVESS
IATTVAATATATAAVTAAADYLPPGETAESCAAAATGKTCLSVVMVKA*
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mRNA from alignment at P-wetherbeei_contig10082:135..817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10082.1.1 ID=mRNA_P-wetherbeei_contig10082.1.1|Name=mRNA_P-wetherbeei_contig10082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=683bp|location=Sequence derived from alignment at P-wetherbeei_contig10082:135..817+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGTACACTTTCCCGTCCCTTCTTTTTCTGCTTTGAACCGTCCCCT
TCTTTGCGGTTCCCTTGCGGAATCGGGTGGCGACTAATGACAACCGCGAC
AATCACAACGGTGACGATGATGACGGAACTGCAACAACGGCGACGGCGGC
GCATTGTGACGGTGGCCAACAAATTGGTAATAACGACTGCGACGGCGACG
GTCACCAACGAAAATGGCTACTCCGGCAAATGGCCGCGTGCGGCGGCAAC
GGCCGCGGCGATTGCGGCTGCTCTGCTACCATTTCACGTTCGCGTTTATC
TTTTCCGGCAGATTGTAGTGGCGGTGGACACCGCACAGCGGCTGGAGCGC
AACGGCTGGGCGAAGCGCGCCCGCGTCGAGTCTTCCATTGCGACGACCGT
GGCGGCGACAGCGACTGCCACCGCGGCGGTCACTGCGGCTGCGGATTATT
TGCCGCCGGGGGAGACCGCGGAGTCCTGCGCCGCCGCTGCCACTGGCAAG
ACGTGCCTGTCCGTGGTCATGGTGAAGGCGTAGTCCTGGCCAGTTCCAGC
TCTTAGTTCCTGTGTAAAGGAAATGTTGTAATTCCCTGAAGATGAGGTAC
TCTTTGCCGGTCATGTCTTATGGAGTAGTGATATTCAGCCGAGCCACATT
CCCGTATCCCATCATGGGAGCCATAGATTTCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10082:135..817+

>mRNA_P-wetherbeei_contig10082.1.1 ID=mRNA_P-wetherbeei_contig10082.1.1|Name=mRNA_P-wetherbeei_contig10082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig10082:135..817+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACCGCGACAATCACAACGGTGACGATGATGACGGAACTGCAACA
ACGGCGACGGCGGCGCATTGTGACGGTGGCCAACAAATTGGTAATAACGA
CTGCGACGGCGACGGTCACCAACGAAAATGGCTACTCCGGCAAATGGCCG
CGTGCGGCGGCAACGGCCGCGGCGATTGCGGCTGCTCTGCTACCATTTCA
CGTTCGCGTTTATCTTTTCCGGCAGATTGTAGTGGCGGTGGACACCGCAC
AGCGGCTGGAGCGCAACGGCTGGGCGAAGCGCGCCCGCGTCGAGTCTTCC
ATTGCGACGACCGTGGCGGCGACAGCGACTGCCACCGCGGCGGTCACTGC
GGCTGCGGATTATTTGCCGCCGGGGGAGACCGCGGAGTCCTGCGCCGCCG
CTGCCACTGGCAAGACGTGCCTGTCCGTGGTCATGGTGAAGGCGTAG
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