mRNA_P-wetherbeei_contig1008.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1008.1.1
Unique NamemRNA_P-wetherbeei_contig1008.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1008.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1008contigP-wetherbeei_contig1008:85..318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7668.SPU_020679-tr
Preferred nameSTARD7
PFAMsSTART
Model size234
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006629,GO:0006644,GO:0006650,GO:0006656,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0019637,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0097164,GO:0098588,GO:0098805,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue1.49e-06
EggNOG OGsKOG2761@1|root,KOG2761@2759|Eukaryota,39T8H@33154|Opisthokonta,3BDVU@33208|Metazoa,3CSH6@33213|Bilateria
Descriptionlipid binding
Cds size234
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.6571734-CDS-P-wetherbeei_contig1008:84..3181683185853.6571734-CDS-P-wetherbeei_contig1008:84..318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1008 85..318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1008.1.1prot_P-wetherbeei_contig1008.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1008 85..318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1008.1.1

>prot_P-wetherbeei_contig1008.1.1 ID=prot_P-wetherbeei_contig1008.1.1|Name=mRNA_P-wetherbeei_contig1008.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MPLLTAFVAKNDSHLRLDADLGGWKTCYKTEHMIVWHRQAPASRLQEFRA
VGTFSDISAMSFIEASSDVAFRRIWDKV
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mRNA from alignment at P-wetherbeei_contig1008:85..318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1008.1.1 ID=mRNA_P-wetherbeei_contig1008.1.1|Name=mRNA_P-wetherbeei_contig1008.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig1008:85..318+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACTCTTGACAGCATTCGTCGCTAAAAATGACTCGCACTTGCGGCT
GGACGCGGACCTTGGCGGCTGGAAGACGTGCTATAAGACAGAGCATATGA
TTGTCTGGCACAGGCAGGCGCCGGCATCCAGACTGCAAGAGTTTCGCGCC
GTCGGGACCTTTTCCGACATCTCCGCCATGTCTTTCATTGAAGCGTCGTC
GGATGTTGCCTTCCGACGCATCTGGGATAAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1008:85..318+

>mRNA_P-wetherbeei_contig1008.1.1 ID=mRNA_P-wetherbeei_contig1008.1.1|Name=mRNA_P-wetherbeei_contig1008.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig1008:85..318+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACTCTTGACAGCATTCGTCGCTAAAAATGACTCGCACTTGCGGCT
GGACGCGGACCTTGGCGGCTGGAAGACGTGCTATAAGACAGAGCATATGA
TTGTCTGGCACAGGCAGGCGCCGGCATCCAGACTGCAAGAGTTTCGCGCC
GTCGGGACCTTTTCCGACATCTCCGCCATGTCTTTCATTGAAGCGTCGTC
GGATGTTGCCTTCCGACGCATCTGGGATAAGGTA
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