mRNA_P-wetherbeei_contig10079.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10079.1.1
Unique NamemRNA_P-wetherbeei_contig10079.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: A0A7X8XKR7_9BURK (Ribose-5-phosphate isomerase A n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XKR7_9BURK)

HSP 1 Score: 166 bits (420), Expect = 5.540e-49
Identity = 85/150 (56.67%), Postives = 104/150 (69.33%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGSADLLEL 450
            +D+ +DGADEVDP   L+KGGGGALLREKLVA ++RR V+++D  K VA LG    +P+EVVPFGW RTL+ L  LG      R      F +DH NYI DC  A I +P ALHAR+KSL GVVETGIF G+   ++TGH DG+ DL EL
Sbjct:   82 VDLTVDGADEVDPAGNLIKGGGGALLREKLVALASRRVVIVVDPDKHVAELGHDFRLPVEVVPFGWSRTLQALRDLGAEP-GMRRQGDEFFRTDHDNYIIDCRFAGIPEPAALHARIKSLSGVVETGIFPGLAHAILTGHPDGTWDLREL 230          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: W4Q7F0_9BACI (Ribose-5-phosphate isomerase A n=4 Tax=Alkalihalobacillus TaxID=2675234 RepID=W4Q7F0_9BACI)

HSP 1 Score: 156 bits (394), Expect = 4.320e-45
Identity = 72/143 (50.35%), Postives = 107/143 (74.83%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDG 429
            LD+AIDGADEVDP + L+KGGGG+L+REK+V +++++ ++++DESK V NLG   GVPIEVVPFGW  T + +  +G H ++ R      +LS++GNYI DC+   I+D   LH+++K +VGVVETG+F+GMT  ++ G ++G
Sbjct:   80 LDLAIDGADEVDPSFNLIKGGGGSLVREKIVNAASKKLIIVVDESKVVNNLGEF-GVPIEVVPFGWEVTAQRMLQMGCHSIQLRKRENEIYLSNNGNYILDCYFGLIEDAMNLHSQLKQIVGVVETGLFIGMTDHVIVGKDNG 221          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: UPI001CFF19C0 (ribose-5-phosphate isomerase RpiA n=2 Tax=Bacillaceae TaxID=186817 RepID=UPI001CFF19C0)

HSP 1 Score: 155 bits (393), Expect = 5.000e-45
Identity = 76/144 (52.78%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGS 432
            LDI+IDGADEVDP++ L+KGGGGALLREK V S  ++F+V++DESK V+ LG+   +P+EV+PFGW  ++R +E+LG   +  R   G  F+SD+GNYI DC  + I  P +LH ++K L+GVVETG+F  MT +L+ G  DG+
Sbjct:   74 LDISIDGADEVDPEFNLIKGGGGALLREKFVDSLTKKFIVVVDESKLVSRLGSFP-LPVEVIPFGWEVSVRAIESLGGTPI-LRKKDGETFVSDNGNYIIDCHFSTIHQPASLHTQLKQLLGVVETGLFTDMTDLLIIGGTDGT 215          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: UPI00141EAA23 (ribose-5-phosphate isomerase RpiA n=1 Tax=Alkalibacillus almallahensis TaxID=1379154 RepID=UPI00141EAA23)

HSP 1 Score: 153 bits (387), Expect = 3.810e-44
Identity = 80/149 (53.69%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGSADLLE 447
            LD+AIDGADEVDP++ L+KGGGG+LLREK+V  +A RF+V+ DESK+V  LG    +P+EVVPFGW +T   +EA G   +  R   G PF++D+G YI DC    I+D   LH ++KSLVGVVETG+F+ MT +++ G ED  AD+L+
Sbjct:   75 LDLAIDGADEVDPNFQLLKGGGGSLLREKIVDVAADRFIVVADESKQVEQLGAFP-LPVEVVPFGWEQTQGKIEAFGCEAV-LRETGGEPFVTDNGLYILDCHFERIEDSEWLHNQLKSLVGVVETGLFLNMTDLVIVGRED-RADVLD 220          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: UPI0018A0E050 (ribose-5-phosphate isomerase RpiA n=1 Tax=Paenibacillus sp. 1001270B_150601_E10 TaxID=2787079 RepID=UPI0018A0E050)

HSP 1 Score: 153 bits (387), Expect = 4.150e-44
Identity = 68/147 (46.26%), Postives = 105/147 (71.43%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGSADL 441
            +D+ IDGADEV+  + LVKGGGGALLREK+ A ++++ +V++DESK V  LG   G+P+EVVPF W  T R +E LG   + +  A G PF++D+GNYI DC    I++P AL A+++ + G+V+ G+F+G+  +++ G+EDG  ++
Sbjct:   75 IDVTIDGADEVNASFHLVKGGGGALLREKITAYASKQMIVIVDESKAVNELGKF-GLPVEVVPFAWEMTARHIEKLGCKAIRRADAEGEPFITDNGNYILDCQFGVIEEPPALEAKLQQIPGIVDHGLFIGLADIVIVGYEDGRVEI 220          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: A0A2M7Z199_9BACT (Ribose-5-phosphate isomerase A n=3 Tax=Nitrospirae TaxID=40117 RepID=A0A2M7Z199_9BACT)

HSP 1 Score: 153 bits (387), Expect = 5.520e-44
Identity = 71/143 (49.65%), Postives = 105/143 (73.43%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDG 429
            +D+A+DGAD+VDP   L+KGGGGALLREK+VA +A++F+V++D++K+V +LG    +P+E+VPFGW  T R LE LG+     R  AG+PFL+D+GNY+ D   + I DP +L + +  + GVVE G+F+ MT +++TG  DG
Sbjct:   85 IDVAVDGADQVDPHLNLIKGGGGALLREKIVAKAAQQFIVIVDQAKQVTHLGLPFPLPVEIVPFGWRTTQRHLEHLGWPS-PLRHKAGQPFLTDNGNYVVDLHISEITDPSSLESSLTQIPGVVECGLFLMMTSLVITGTNDG 226          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: A0A8G0MPP3_9BACL (Ribose-5-phosphate isomerase A n=1 Tax=Paenibacillus sp. sptzw28 TaxID=715179 RepID=A0A8G0MPP3_9BACL)

HSP 1 Score: 153 bits (386), Expect = 6.590e-44
Identity = 78/149 (52.35%), Postives = 103/149 (69.13%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGSADLLE 447
            LD+ IDGADE+DPD  L+KGGGGAL REK+VAS++R  V++ DESK V +LG    +P+E+  FG   T+R L  LG   L  R A   PF++D+GNYI DC  A I+DPG LH R+  +VGVVE G+F+GM    V G+E+G+  LL+
Sbjct:   75 LDLTIDGADELDPDLNLIKGGGGALFREKIVASASRELVIIADESKAVEHLGAFP-LPVEIARFGAEMTMRRLRKLGC-TLRLRGAGDMPFVTDNGNYIADCSFASIEDPGTLHDRINRIVGVVENGLFIGMANQAVIGYENGTVKLLK 221          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: A0A1M3HPD5_9SPHI (Ribose-5-phosphate isomerase A n=1 Tax=Sphingobacteriales bacterium 50-39 TaxID=1895841 RepID=A0A1M3HPD5_9SPHI)

HSP 1 Score: 153 bits (386), Expect = 7.180e-44
Identity = 77/149 (51.68%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGSADLLE 447
            LDI IDGADEVD    L+KGGGGALLREK+VA+  + +++++DESK V +LG    +P+EVVPF W  T R L ALG      RMA  +P+L+D+ NYIFDC    I+DP  LH RV  + GV+E G F+GM  ++V+G  DG A ++E
Sbjct:   80 LDITIDGADEVDRGLNLIKGGGGALLREKIVAAVTKFYIIIVDESKLVEHLGKFP-LPVEVVPFAWELTERKLAALGCTP-RMRMAGDKPYLTDNSNYIFDCSFGRIEDPAGLHRRVSDITGVMEDGFFIGMADIVVSGTADGGARVIE 226          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: UPI001A905E09 (ribose-5-phosphate isomerase RpiA n=1 Tax=Bacillus sp. NTK074B TaxID=2802174 RepID=UPI001A905E09)

HSP 1 Score: 152 bits (385), Expect = 8.090e-44
Identity = 74/144 (51.39%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGS 432
            LDI+IDGADEVDP++ L+KGGGGAL+REK V S  ++F+V++DE K V+ LG+   +P+EV+PFGW  +++ LE LG   +  R   G  F+SD+GNYI DC  + I  P +LH  +K L+GVVETG+F  MT +L+ G  DG+
Sbjct:   74 LDISIDGADEVDPEFNLIKGGGGALVREKFVDSFTKKFIVVVDELKLVSTLGSFP-LPVEVIPFGWEVSVKALEELGCKPI-LRKKEGETFVSDNGNYIVDCHFSTIHQPASLHTHIKQLLGVVETGLFTDMTDLLIIGKTDGA 215          
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Match: UPI001F0D3353 (ribose-5-phosphate isomerase RpiA n=1 Tax=Bacillus sp. BHET2 TaxID=2583818 RepID=UPI001F0D3353)

HSP 1 Score: 152 bits (383), Expect = 9.930e-44
Identity = 75/143 (52.45%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVANLGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIFDCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDG 429
            LD++IDGADEVD DY L+KGGGGAL+REK V +   +F+V+IDESK V  LG    +P+EVVPFGW  T   L   G   +  RM  G  F+SD+GNYI DC  + I++P +LH  +K L+GV+ETG+F GMT +++ G +DG
Sbjct:   57 LDLSIDGADEVDSDYNLIKGGGGALVREKFVDAFTNKFIVVIDESKLVNKLGAFP-LPVEVVPFGWEMTSTQLAKFGCAPI-LRMKEGEVFISDNGNYIVDCQFSSIENPSSLHIELKQLLGVIETGLFTGMTNMVLVGKKDG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10079.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XKR7_9BURK5.540e-4956.67Ribose-5-phosphate isomerase A n=1 Tax=Burkholderi... [more]
W4Q7F0_9BACI4.320e-4550.35Ribose-5-phosphate isomerase A n=4 Tax=Alkalihalob... [more]
UPI001CFF19C05.000e-4552.78ribose-5-phosphate isomerase RpiA n=2 Tax=Bacillac... [more]
UPI00141EAA233.810e-4453.69ribose-5-phosphate isomerase RpiA n=1 Tax=Alkaliba... [more]
UPI0018A0E0504.150e-4446.26ribose-5-phosphate isomerase RpiA n=1 Tax=Paenibac... [more]
A0A2M7Z199_9BACT5.520e-4449.65Ribose-5-phosphate isomerase A n=3 Tax=Nitrospirae... [more]
A0A8G0MPP3_9BACL6.590e-4452.35Ribose-5-phosphate isomerase A n=1 Tax=Paenibacill... [more]
A0A1M3HPD5_9SPHI7.180e-4451.68Ribose-5-phosphate isomerase A n=1 Tax=Sphingobact... [more]
UPI001A905E098.090e-4451.39ribose-5-phosphate isomerase RpiA n=1 Tax=Bacillus... [more]
UPI001F0D33539.930e-4452.45ribose-5-phosphate isomerase RpiA n=1 Tax=Bacillus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10079contigP-wetherbeei_contig10079:62..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog333138.LQ50_15280
Preferred namerpiA
PFAMsRib_5-P_isom_A
Model size453
Max annot lvl91061|Bacilli
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.17e-44
EggNOG OGsCOG0120@1|root,COG0120@2|Bacteria,1V1DB@1239|Firmicutes,4HED5@91061|Bacilli,1ZDKP@1386|Bacillus
Ec32 ortholog descriptionRibose-5-phosphate isomerase
Ec32 orthologEc-08_003540.1
EC5.3.1.6
DescriptionCatalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
Cds size453
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.6088743-CDS-P-wetherbeei_contig10079:61..5141683185853.6088743-CDS-P-wetherbeei_contig10079:61..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10079 62..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10079.1.1prot_P-wetherbeei_contig10079.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10079 62..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10079.1.1

>prot_P-wetherbeei_contig10079.1.1 ID=prot_P-wetherbeei_contig10079.1.1|Name=mRNA_P-wetherbeei_contig10079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
LDIAIDGADEVDPDYALVKGGGGALLREKLVASSARRFVVMIDESKRVAN
LGTTRGVPIEVVPFGWCRTLRDLEALGFHKLEQRMAAGRPFLSDHGNYIF
DCWTAPIQDPGALHARVKSLVGVVETGIFVGMTGVLVTGHEDGSADLLEL
*
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mRNA from alignment at P-wetherbeei_contig10079:62..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10079.1.1 ID=mRNA_P-wetherbeei_contig10079.1.1|Name=mRNA_P-wetherbeei_contig10079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig10079:62..514+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGACATCGCTATCGACGGAGCTGACGAAGTCGACCCTGATTATGCACT CGTGAAGGGCGGCGGCGGAGCGCTCTTGCGCGAAAAGCTGGTGGCTTCGA GCGCGCGGCGCTTTGTCGTGATGATCGATGAAAGTAAGCGAGTTGCGAAC CTGGGAACGACGCGGGGGGTGCCCATCGAAGTGGTCCCCTTCGGTTGGTG CCGAACCCTGCGTGATCTGGAAGCGCTCGGTTTCCACAAGCTCGAGCAGA GGATGGCGGCCGGGCGCCCCTTCTTAAGCGATCATGGAAACTACATTTTC GATTGCTGGACAGCCCCTATCCAGGACCCGGGGGCGCTTCACGCGCGCGT CAAGAGCCTGGTCGGTGTGGTCGAGACAGGCATCTTTGTGGGCATGACCG GGGTCCTCGTGACCGGTCACGAGGATGGCAGCGCCGATCTCCTCGAGCTA TAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10079:62..514+

>mRNA_P-wetherbeei_contig10079.1.1 ID=mRNA_P-wetherbeei_contig10079.1.1|Name=mRNA_P-wetherbeei_contig10079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig10079:62..514+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGACATCGCTATCGACGGAGCTGACGAAGTCGACCCTGATTATGCACT
CGTGAAGGGCGGCGGCGGAGCGCTCTTGCGCGAAAAGCTGGTGGCTTCGA
GCGCGCGGCGCTTTGTCGTGATGATCGATGAAAGTAAGCGAGTTGCGAAC
CTGGGAACGACGCGGGGGGTGCCCATCGAAGTGGTCCCCTTCGGTTGGTG
CCGAACCCTGCGTGATCTGGAAGCGCTCGGTTTCCACAAGCTCGAGCAGA
GGATGGCGGCCGGGCGCCCCTTCTTAAGCGATCATGGAAACTACATTTTC
GATTGCTGGACAGCCCCTATCCAGGACCCGGGGGCGCTTCACGCGCGCGT
CAAGAGCCTGGTCGGTGTGGTCGAGACAGGCATCTTTGTGGGCATGACCG
GGGTCCTCGTGACCGGTCACGAGGATGGCAGCGCCGATCTCCTCGAGCTA
TAG
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