mRNA_P-wetherbeei_contig10077.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10077.1.1
Unique NamemRNA_P-wetherbeei_contig10077.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10077.1.1 vs. uniprot
Match: A0A836CND1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.860e-28
Identity = 117/384 (30.47%), Postives = 182/384 (47.40%), Query Frame = 1 
Query:  706 PWVRVARRLQRHVLPRLPRDALLAVAGAAGAELIKREASGRVADLPEPLRPQALALLNQTFEHVTLRVGELQAGGWNWKAAALREAAAWRXXXXXXXXXXXXXXADGAVYAQWEALVRLALQGRADEIVKEWSGGAVSISGSGAIVGAVGIEQALEQIHPAAAPLVRLTAETRAQLKRIEVLVKQLDAPGGLGEVGVVELYSVLSGGAAAPAAVMDVARLLSISNTTAYSLASLEAAGDAQ-----------ITLASLLVRLTSPVDITRALVYSALAAENEAVESLRALSESLQDQVARTLAEMEDELLQAN----------AASAVAAGDSSSEERLAPYNYAAALAGSAVRAARDAFSEGMRQVNSGFEELVEPSRRGLPR 1794
            PW R+   + + V+PRLP++ LLAVAG +  E++KRE S +V  LP  ++P+A  LLNQT+  +  +  EL   GW+      RE   W                 G   ++ E  +   +Q + + I++EWS  A  ++   ++     I+     I     P      E   +++ +E + ++LD  G LG + V ++Y  ++G  A P A++D  RLLS++N TA  + +  A G              +TL +L+  L S   + +A  Y+AL AE+EAV  LRA  E  Q  +  TLA  E  L Q            +A+A A  +      + P   AA  A    +AAR AF+     VNS F++  +P  RGLPR
Sbjct:  205 PWGRLQDSVTKQVIPRLPKEWLLAVAGISAVEVLKREVSAQVDALPAEVQPKARVLLNQTYVTLGEKASELVESGWDVVPLVTREVQQWMKR--------------GVGNSELEVFLLDMVQLQVERILQEWSTSAEGLARLSSLSN--NIDTTYLMIRDLLPP------EVVRRVRALEAVTRKLDTQG-LGALSVQDVYGAVTGSYAVPQALLDGVRLLSLANATASVVQAAHAQGXXXXXXXXXXAYGGVTLEALVGGLNSTEKLAQAATYTALVAESEAVSVLRAALEDTQRSINETLATFEHSLGQQRRQGVRPRPMRSAAAAAGANPHRSTIVVPLQEAAITA---TQAARSAFTRFSESVNSAFDKAADPVSRGLPR 562
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BLAST of mRNA_P-wetherbeei_contig10077.1.1 vs. uniprot
Match: A0A836CKP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKP7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.000e-22
Identity = 116/390 (29.74%), Postives = 172/390 (44.10%), Query Frame = 1 
Query:  706 PWVRVARRLQRHVLPRLPRDALLAVAGAAGAELIKREASGRVADLPEPLRPQALALLNQTFEHVTLRVGELQAGGWNWKAAALREAAAWRXXXXXXXXXXXXXXADGAVYAQWEALVRLALQGRADEIVK----EWSGGAVSISGSG-AIVGAVG--IEQALEQIHPAAAPLVRLTAETRAQLKRIEVLVKQLDAPGGLGEVGVVELYSVLSGGAAAPAAVMDVARLLSISNTTAYSLASLEAAGDAQ----------ITLASLLVRLTSPVDITRALVYSALAAENEAVESLRALSESLQDQVARTLAEMEDELLQAN----------AASAVAAGDSSSEERLAPYNYAAALAGSAVRAARDAFSEGMRQVNSGFEELVEPSRRGLPR 1794
            PW R+   + + V+PRLP++ LLAVAG +  E+++RE S +V  LP  ++P+A  LLNQT+  +  +  EL   GW       RE   W                   V  Q            +   ++     WS    S S  G A + ++   I+     IH        L  E   ++  +E + ++LD  G LG + V ++Y V +G  A P A++D  RLLS++N TA  + +  A G             +T  +L+  L S   + +A  Y+AL AE+EAV  LRA  E  Q  +  TLA  E  L Q             A+A A  +      + P   AA       +AAR AF+     VNS F++  +P  RGLPR
Sbjct:   39 PWGRLQDSVTKQVIPRLPKEWLLAVAGISAVEVLRREVSAQVDALPAEVQPKARVLLNQTYVTLGEKASELVESGWEVVPLVTREVQQWMKRGVGNSELEVFLL--DMVQLQHVTTNTATTHATSLRALRPPACRWSASCRSTSAEGLARLSSLSNNIDTTYLMIH------YLLPPEVVRRVLTLEAVTRKLDRQG-LGALSVQDVYGVFTGSYAVPQALLDGVRLLSLANATASVVHAAHAQGXXXXXXXXXAYGGVTPEALVGGLNSTEKLAQAAKYTALVAESEAVSVLRAALEDTQRSINETLATFEHSLGQQRRQGVRPRPMRGAAAAAGANPHRGTIVVPLQEAAITV---TQAARSAFTRFSESVNSAFDKAADPVSRGLPR 416
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10077.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CND1_9STRA3.860e-2830.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKP7_9STRA8.000e-2229.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10077contigP-wetherbeei_contig10077:2..2268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2054
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002070.1
Cds size1716
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.561923-UTR-P-wetherbeei_contig10077:1..421683185853.561923-UTR-P-wetherbeei_contig10077:1..42Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10077 2..42 -
1683185853.583874-UTR-P-wetherbeei_contig10077:1971..22681683185853.583874-UTR-P-wetherbeei_contig10077:1971..2268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10077 1972..2268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.5695198-CDS-P-wetherbeei_contig10077:42..4981683185853.5695198-CDS-P-wetherbeei_contig10077:42..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10077 43..498 -
1683185853.5767558-CDS-P-wetherbeei_contig10077:711..19711683185853.5767558-CDS-P-wetherbeei_contig10077:711..1971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10077 712..1971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10077.1.1prot_P-wetherbeei_contig10077.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10077 43..1971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10077.1.1

>prot_P-wetherbeei_contig10077.1.1 ID=prot_P-wetherbeei_contig10077.1.1|Name=mRNA_P-wetherbeei_contig10077.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=572bp
MKTFRMPNSSITLIFCIQVRLQRSAAFVLRGQGHDRMARRSELAARRAIA
RPSDDFVWGPDFSVGAGFLSAPERRSWDDAPTFLLTAPSEETINNAAAAA
TAAVAAATAASTAAAATPKAATATAAAGSEPMRPPGPWVRVARRLQRHVL
PRLPRDALLAVAGAAGAELIKREASGRVADLPEPLRPQALALLNQTFEHV
TLRVGELQAGGWNWKAAALREAAAWRRRHDQDDAASSSSSADGAVYAQWE
ALVRLALQGRADEIVKEWSGGAVSISGSGAIVGAVGIEQALEQIHPAAAP
LVRLTAETRAQLKRIEVLVKQLDAPGGLGEVGVVELYSVLSGGAAAPAAV
MDVARLLSISNTTAYSLASLEAAGDAQITLASLLVRLTSPVDITRALVYS
ALAAENEAVESLRALSESLQDQVARTLAEMEDELLQANAASAVAAGDSSS
EERLAPYNYAAALAGSAVRAARDAFSEGMRQVNSGFEELVEPSRRGLPRP
GQLLPWQQWCASMAWTPSVHDGSGGGGGGGSGGGDTSAGGGGSGRSSMAG
GNSGGGGGGVRRTSARGSGVT*
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mRNA from alignment at P-wetherbeei_contig10077:2..2268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10077.1.1 ID=mRNA_P-wetherbeei_contig10077.1.1|Name=mRNA_P-wetherbeei_contig10077.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2267bp|location=Sequence derived from alignment at P-wetherbeei_contig10077:2..2268- (Phaeothamnion wetherbeei SAG_119_79)
TAGCCCTCGTCGCTCTCCCTCTTTCAACGACGGAAGGACGCAGGGAACAC
ATTTCTCCTGCTCATGGCGTGCCACGTGAAACGGTGAGTTTCGATTTTGC
AGATGTCTTTCAAGCCGTCAGTTGGCCAACAGTTTGTATGACCGTCTCTC
GAAATTGAAGCCTAAACTAACAACATTCATGTTCACTTGATGTTTCGAAA
CTTGCGTCAATAGAACGGCAATCGATCGATTGCGTTCGATTGCCGTTCTA
TTAATAATACTTTTGAAATACTATAATGCCTGTTCCCTTTGTCAAATATG
AAGACCTTTCGTATGCCTAATTCGTCAATCACACTCATCTTTTGCATACA
GGTGAGACTCCAAAGAAGCGCCGCCTTTGTGTTGAGGGGGCAGGGGCACG
ACAGAATGGCAAGGCGTTCGGAGCTTGCTGCCCGTCGAGCCATCGCTCGG
CCCTCCGATGATTTTGTGTGGGGTCCGGATTTCAGCGTAGGTGCCGGATT
CCTCTCAGCGCCCGAACGTCGCAGTTGGGACGATGCGCCCACTTTTCTGC
TAACTGCTCCTTCAGAGGAAACGATCAACAACGCGGCCGCGGCGGCGACG
GCAGCAGTCGCTGCGGCGACTGCAGCATCGACTGCGGCGGCGGCAACGCC
AAAAGCTGCAACTGCAACGGCTGCGGCGGGAAGCGAGCCGATGCGGCCGC
CGGGTCCCTGGGTGCGGGTCGCCCGGCGACTCCAGCGGCACGTGCTCCCG
CGGCTGCCGCGCGACGCGCTGCTGGCGGTGGCGGGCGCCGCCGGGGCCGA
GTTGATCAAGCGCGAGGCGTCGGGCCGCGTCGCCGACTTGCCGGAGCCGT
TACGACCCCAGGCGCTGGCCCTGCTGAACCAGACCTTCGAGCACGTGACG
CTGCGCGTCGGGGAGCTGCAGGCCGGCGGCTGGAACTGGAAAGCCGCAGC
GCTTCGGGAGGCGGCGGCGTGGCGGCGGCGGCACGACCAGGACGACGCCG
CTTCCTCCTCTTCTTCCGCCGACGGCGCCGTCTACGCGCAGTGGGAAGCG
CTTGTCCGCCTGGCGCTGCAGGGGCGCGCCGACGAAATCGTGAAAGAGTG
GTCCGGCGGCGCCGTTTCCATCAGCGGCAGCGGCGCCATCGTCGGGGCTG
TCGGCATCGAACAAGCACTGGAGCAGATCCACCCGGCGGCGGCCCCTCTG
GTGCGGTTAACGGCGGAGACGCGGGCGCAGCTGAAGCGGATCGAGGTGCT
GGTCAAACAGCTGGACGCGCCGGGTGGTCTGGGCGAAGTCGGAGTGGTGG
AATTGTATTCGGTGCTTTCCGGCGGGGCGGCGGCCCCGGCGGCGGTCATG
GATGTGGCGCGGCTCCTGTCCATTTCGAACACGACGGCGTACTCGCTAGC
GTCACTGGAGGCGGCCGGGGATGCCCAGATCACGCTGGCAAGCCTGCTCG
TCAGGCTGACCAGCCCTGTCGACATAACTCGTGCGCTCGTTTACTCGGCG
CTGGCGGCGGAGAACGAGGCCGTTGAGAGCCTGCGAGCGCTTAGCGAGAG
CTTGCAGGTGAGTGTGAGAAATTTGGCGAGCAGGGTGGTTCGGAAAAAAA
GAGGTAAGCCGGGGAGGAAGGAAGGGGATGCTGATGGGTGAAACGCAGGG
AATCTGCTTTGCGCGGTTTCCGCGTTCTGGAGGTTTGAGCTCATTTTGAT
CTCGACGCCGTCGCCGCGTCTTCTGACCCAGACGCTCTGTGCCCTCTGCA
CATTTCCGCAAACACGCCAGGACCAGGTGGCGCGGACGCTCGCCGAAATG
GAAGACGAGCTGCTGCAAGCGAACGCAGCGTCGGCGGTGGCGGCCGGCGA
CAGCAGCAGCGAAGAACGGCTGGCGCCGTACAATTACGCCGCCGCCCTGG
CGGGGTCGGCTGTGCGCGCCGCCCGCGACGCCTTCTCCGAGGGGATGCGG
CAGGTGAACTCGGGATTCGAGGAGCTTGTGGAGCCGTCGCGGCGGGGGCT
GCCGCGACCGGGGCAGCTGCTGCCGTGGCAGCAATGGTGCGCAAGCATGG
CGTGGACGCCCAGCGTTCACGATGGTAGCGGTGGTGGCGGCGGTGGTGGC
AGCGGCGGCGGCGATACCTCTGCCGGCGGCGGCGGCAGCGGCCGGTCGAG
CATGGCGGGAGGAAACAGCGGCGGCGGTGGTGGCGGCGTCAGGAGAACGA
GTGCTCGTGGCAGCGGCGTCACCTAGACGCGCAGCAACATCTGTTCTGTG
CGCGCGTCTGAATGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10077:2..2268-

>mRNA_P-wetherbeei_contig10077.1.1 ID=mRNA_P-wetherbeei_contig10077.1.1|Name=mRNA_P-wetherbeei_contig10077.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1716bp|location=Sequence derived from alignment at P-wetherbeei_contig10077:2..2268- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGACCTTTCGTATGCCTAATTCGTCAATCACACTCATCTTTTGCAT
ACAGGTGAGACTCCAAAGAAGCGCCGCCTTTGTGTTGAGGGGGCAGGGGC
ACGACAGAATGGCAAGGCGTTCGGAGCTTGCTGCCCGTCGAGCCATCGCT
CGGCCCTCCGATGATTTTGTGTGGGGTCCGGATTTCAGCGTAGGTGCCGG
ATTCCTCTCAGCGCCCGAACGTCGCAGTTGGGACGATGCGCCCACTTTTC
TGCTAACTGCTCCTTCAGAGGAAACGATCAACAACGCGGCCGCGGCGGCG
ACGGCAGCAGTCGCTGCGGCGACTGCAGCATCGACTGCGGCGGCGGCAAC
GCCAAAAGCTGCAACTGCAACGGCTGCGGCGGGAAGCGAGCCGATGCGGC
CGCCGGGTCCCTGGGTGCGGGTCGCCCGGCGACTCCAGCGGCACGTGCTC
CCGCGGCTGCCGCGCGACGCGCTGCTGGCGGTGGCGGGCGCCGCCGGGGC
CGAGTTGATCAAGCGCGAGGCGTCGGGCCGCGTCGCCGACTTGCCGGAGC
CGTTACGACCCCAGGCGCTGGCCCTGCTGAACCAGACCTTCGAGCACGTG
ACGCTGCGCGTCGGGGAGCTGCAGGCCGGCGGCTGGAACTGGAAAGCCGC
AGCGCTTCGGGAGGCGGCGGCGTGGCGGCGGCGGCACGACCAGGACGACG
CCGCTTCCTCCTCTTCTTCCGCCGACGGCGCCGTCTACGCGCAGTGGGAA
GCGCTTGTCCGCCTGGCGCTGCAGGGGCGCGCCGACGAAATCGTGAAAGA
GTGGTCCGGCGGCGCCGTTTCCATCAGCGGCAGCGGCGCCATCGTCGGGG
CTGTCGGCATCGAACAAGCACTGGAGCAGATCCACCCGGCGGCGGCCCCT
CTGGTGCGGTTAACGGCGGAGACGCGGGCGCAGCTGAAGCGGATCGAGGT
GCTGGTCAAACAGCTGGACGCGCCGGGTGGTCTGGGCGAAGTCGGAGTGG
TGGAATTGTATTCGGTGCTTTCCGGCGGGGCGGCGGCCCCGGCGGCGGTC
ATGGATGTGGCGCGGCTCCTGTCCATTTCGAACACGACGGCGTACTCGCT
AGCGTCACTGGAGGCGGCCGGGGATGCCCAGATCACGCTGGCAAGCCTGC
TCGTCAGGCTGACCAGCCCTGTCGACATAACTCGTGCGCTCGTTTACTCG
GCGCTGGCGGCGGAGAACGAGGCCGTTGAGAGCCTGCGAGCGCTTAGCGA
GAGCTTGCAGGACCAGGTGGCGCGGACGCTCGCCGAAATGGAAGACGAGC
TGCTGCAAGCGAACGCAGCGTCGGCGGTGGCGGCCGGCGACAGCAGCAGC
GAAGAACGGCTGGCGCCGTACAATTACGCCGCCGCCCTGGCGGGGTCGGC
TGTGCGCGCCGCCCGCGACGCCTTCTCCGAGGGGATGCGGCAGGTGAACT
CGGGATTCGAGGAGCTTGTGGAGCCGTCGCGGCGGGGGCTGCCGCGACCG
GGGCAGCTGCTGCCGTGGCAGCAATGGTGCGCAAGCATGGCGTGGACGCC
CAGCGTTCACGATGGTAGCGGTGGTGGCGGCGGTGGTGGCAGCGGCGGCG
GCGATACCTCTGCCGGCGGCGGCGGCAGCGGCCGGTCGAGCATGGCGGGA
GGAAACAGCGGCGGCGGTGGTGGCGGCGTCAGGAGAACGAGTGCTCGTGG
CAGCGGCGTCACCTAG
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