mRNA_P-wetherbeei_contig10076.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10076.1.1
Unique NamemRNA_P-wetherbeei_contig10076.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A836CJ60_9STRA (Hippocampus abundant transcript 1 protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ60_9STRA)

HSP 1 Score: 300 bits (769), Expect = 2.540e-93
Identity = 180/358 (50.28%), Postives = 217/358 (60.61%), Query Frame = 3
Query:  399 SRYLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPESRDVADGPGGEGPCGGSGDSHSTFTAVAARHTGSVRAAAVATSGIGKVSSGGRPPSVGHGNSSNGWPYGPFQANSRQCVFGCRSVLQG*VFLSLRLRG*PCFHFGVFRHFCLSFVCVRHHCALQFGDDLRSPCFSPTIFAGLLQQWNPLASLHAFSGNPLLSRMAVIIFLYYTGVWALV 1472
            +R+ YVLPVLF+E+LAIA+++SL+PG+MVD+FG+WTY+ IG++ETVKG+LAF ACP+FG+LSDVIGRRRCLL+TV+GTT+PVCSLAFTS+LW FVA+ S SG FAATFPLTFAYIAD+VP +RRAPAYGLALATFGLS+S+GPVAGGYLA   GA  VFA ++ LV +D+AYIL VLPES                         VA R  G++   A+AT                 G    G    P  A  R                    RG P    G                    G+      F          QWNPLASL AF GNPLL R+AVI+FLYYTGVWA+V
Sbjct:    1 NRFFYVLPVLFFEFLAIAMARSLIPGLMVDFFGEWTYHVIGVVETVKGLLAFAACPMFGRLSDVIGRRRCLLLTVVGTTLPVCSLAFTSSLWTFVALQSLSGCFAATFPLTFAYIADFVPKARRAPAYGLALATFGLSYSVGPVAGGYLAHEVGAIAVFASSIALVAIDIAYILLVLPES-------------------------VAPRRGGALPPPALATP---------------RGKGGGGGIAVPIPAILR--------------------RGTPGELVG--------------------GEGTEYLPF----------QWNPLASLRAFDGNPLLHRVAVIVFLYYTGVWAVV 268          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A6V3A0Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A0Z0_HETAK)

HSP 1 Score: 249 bits (637), Expect = 6.040e-74
Identity = 126/191 (65.97%), Postives = 151/191 (79.06%), Query Frame = 3
Query:  369 FTTIMPAEEDSRYLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPESR 941
            F  I P EE S+YL+VLPVLFYE+LA++L KSL+P MM  YFGDWTY+ IG+ E VKGILAF +C +FGKLSD IGR++CL +TV GT  P C LAFT +L  FVA  + SG+FA TFPLTFAYI+D VP  RRAPAYGLALATFGLS S+GP AGG+LA+++GA+ VFA   LLVLVD+AYI  +LPES 
Sbjct:    9 FEKIFPEEEGSKYLHVLPVLFYEFLALSLIKSLVPEMMNAYFGDWTYHIIGMSEAVKGILAFTSCSVFGKLSDRIGRKKCLFITVAGTCAPACLLAFTRDLRAFVAAQALSGVFACTFPLTFAYISDLVPKERRAPAYGLALATFGLSLSVGPAAGGFLARVFGAQAVFATTFLLVLVDLAYIAVLLPESN 199          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A836CPP9_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 4.230e-70
Identity = 160/345 (46.38%), Postives = 196/345 (56.81%), Query Frame = 3
Query:  453 LSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPESR--DVADGPGGEGPCGGSGDSHSTFTAVAARH---TGSVRAAAVATSGIGKVSSGGRPPSVGHGNSSNGWPYGPFQANSRQCVFGCRSVLQG*VFLSLRLRG*PCFHFGVFRHFCLSFVCVRHHCALQFGDDLRSPCFSPTIFAGLLQQWNPLASLHAFSGNPLLSRMAVIIFLYYTGVWALV 1472
            +++SL+PGMMV +FG WTY+ IG IET KG LAF+ACP FG+LSD IGRRRCLL+TVLGTT+P CSLAFTS+LWVFV + S SG FAATFPL FAYIAD VPA +RAPAYGLALATFGLS+S+GPVAG YL++  GA  VF   V+L LVD+AYIL VLPES   D      G  P      S      + +R    T +  +   A  G+     GGR  S   G SS G     FQ           + + G V L + + G                   R   A                         P ++L AF G+P+L R+A ++FLYYTGVWA+V
Sbjct:    1 MARSLVPGMMVSFFGGWTYHVIGAIETCKGCLAFIACPAFGRLSDSIGRRRCLLITVLGTTLPWCSLAFTSSLWVFVVLQSLSGCFAATFPLAFAYIADLVPAEKRAPAYGLALATFGLSYSVGPVAGAYLSREVGARAVFLSTVILTLVDLAYILLVLPESGGGDAQXXXXGACPSPTFALSRGPSQQLLSRKGTATDADYSYGAAGEGVFAKQRGGRYVS---GGSSCGSACEAFQ-----------TTIDGRVQLEVDVEGGSXXXXXXXXXXXXXXXXXRDRAA------------------------QPWSALKAFDGDPVLHRVAAVVFLYYTGVWAVV 307          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A6H5J7G6_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7G6_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 1.850e-67
Identity = 148/359 (41.23%), Postives = 181/359 (50.42%), Query Frame = 3
Query:  396 DSRYLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPESRDVADGPGGEGPCGGSGDSHSTFTAVAARHTGSVRAAAVATSGIGKVSSGGRPPSVGHGNSSNGWPYGPFQANSRQCVFGCRSVLQG*VFLSLRLRG*PCFHFGVFRHFCLSFVCVRHHCALQFGDDLRSPCFSPTIFAGLLQQWNPLASLHAFSGNPLLSRMAVIIFLYYTGVWALV 1472
            +SRYL VLPVLFYE+LA+AL + LLP +M+D++G WTY  IG+I+T KG+LAFVACP+FG+LSDVIGR++CL +TVLGT  PV +L  ++NLW+F    + SG FAATFPL F+YI D VP  RRAPAYGLALATFGLSFS+GP  G Y+A  +G   VF  +VLL+ +D+ +I   LPES    +    EG                                                            A   +   G R  LQ                              R   A   G D                QWNPLASL AFSGNPLL   A I  LYYT VWA+V
Sbjct:   15 ESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKKCLFVTVLGTASPVIALCISNNLWIFAGAAAFSGCFAATFPLVFSYIGDLVPPQRRAPAYGLALATFGLSFSLGPAMGAYIALHHGNGAVFLCSVLLIGIDLVFIAVYLPESLGAGEELEFEG------------------------------------------------------------AGGEEAGGGLRKELQ------------------------------RSRTASYGGGDALGAF-----------QWNPLASLKAFSGNPLLKTTAKITLLYYTSVWAVV 272          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A4D9D9X9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9X9_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.870e-64
Identity = 110/183 (60.11%), Postives = 147/183 (80.33%), Query Frame = 3
Query:  393 EDSRYLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPESR 941
            ++ RYLYVLPVLF EYLA++LS++LLPG+M   FG++TY+ +GI+ET KGILAF+ACP+FGKLSDV+GRR  L +TVLGTT+P+ SLA T ++W++      SG+FA+TF +TFAYIAD V   RR+ AYGLALATFGLS+ +GP+ GG+LA+ +    VFA +V LV++ VAYI+ +LPESR
Sbjct:   54 DERRYLYVLPVLFLEYLALSLSRALLPGLMNSAFGNYTYHVLGIVETAKGILAFMACPLFGKLSDVVGRRTGLFITVLGTTLPISSLALTQSMWIYAVAQGLSGVFASTFTITFAYIADLVHKERRSSAYGLALATFGLSYCLGPILGGFLAERFSYRAVFAVSVALVVLAVAYIVVILPESR 236          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A7S3MB15_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB15_9STRA)

HSP 1 Score: 217 bits (553), Expect = 8.670e-62
Identity = 106/183 (57.92%), Postives = 150/183 (81.97%), Query Frame = 3
Query:  405 YLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPESRDVAD 953
            Y  +LPVLF EYLA++L +SL+PGM+VD FG ++Y  +GI+ET+KG+LAFV+ P+FGKLSD IGR+ CLL+TVLGTT+PV  LAFT+N++++  +++ SG+F+ATF LTFAYI+D V + +RAPAYG+ALATFGLSF++GP+AG Y+A  +G ++VF  A+LLVL +V YI+  LPE+  + +
Sbjct:    9 YTMILPVLFLEYLAVSLVRSLIPGMIVDSFGKYSYLAVGIMETMKGLLAFVSSPLFGKLSDKIGRKYCLLVTVLGTTLPVLFLAFTTNMYIYGIMLAISGLFSATFTLTFAYISDCVDSKQRAPAYGIALATFGLSFTVGPIAGSYIAADFGEQSVFLMALLLVLANVMYIVLKLPETAKLVN 191          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: F0Y760_AURAN (MFS domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y760_AURAN)

HSP 1 Score: 210 bits (534), Expect = 1.210e-61
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 3
Query:  405 YLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPESRDVA 950
            Y+++LPVLF E+LAIA++KSLLP  + D+FG+  Y  IG+ ETVKGI AFVACP+FG+LSDV+GR  CLL+TV+GTT P   LAFT NLW +V  +  SG+FA+TF L FAYIAD V A+RRAPAYG ALAT GLSF++GPV G + A+  G   VF  A+ L ++DV  I   LPES + A
Sbjct:   27 YVFILPVLFVEFLAIAVTKSLLPARLNDFFGEEVYMVIGVAETVKGIFAFVACPLFGRLSDVVGRTSCLLVTVVGTTAPCWILAFTDNLWAYVCALGLSGLFASTFTLVFAYIADVVEATRRAPAYGAALATLGLSFTVGPVLGAFAARRVGDRRVFLVALALAILDVLIIGLALPESNEGA 208          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A482SMC9_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMC9_9ARCH)

HSP 1 Score: 209 bits (533), Expect = 1.280e-61
Identity = 106/178 (59.55%), Postives = 141/178 (79.21%), Query Frame = 3
Query:  405 YLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPES 938
            +L VLPVLF EYL+++L +SLLP M+VD FG ++Y+ +GI ET+KG+LAF+ACPI G++SD IGR+ C+L+ +LGTTMP+CSLAF++NL ++  ++SASGIF ATF LTFAYIAD V    RA AYGLALATFGLSF+IGPV G Y+A+ +G   VF  + +LV  +V YI+  LPE+
Sbjct:   13 FLKVLPVLFLEYLSVSLVRSLLPRMIVDTFGPYSYFMVGICETIKGLLAFLACPILGRISDRIGRKPCILVAMLGTTMPICSLAFSNNLILYSVLLSASGIFTATFALTFAYIADIVSKKDRATAYGLALATFGLSFTIGPVLGSYVAQEWGEHVVFVSSCVLVATNVIYIVTHLPET 190          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A7R9YFZ7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFZ7_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.460e-54
Identity = 99/180 (55.00%), Postives = 130/180 (72.22%), Query Frame = 3
Query:  399 SRYLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAETVFAGAVLLVLVDVAYILFVLPES 938
            S +L VLPVLF E+LA +L+K +LP M++++FGD TY  I ++ET+KG+LAF  CP  G+LSD  GRR  LL TVLGT +P C+LAFT NLW++VA  + +G FA       AYIAD V    RAPAYGLALATFGLSF +GPV+G YLA+ Y  + VF G ++L ++D+ Y+  VLPE+
Sbjct:   37 SSFLVVLPVLFLEFLATSLTKGVLPHMLLEFFGDRTYSVIAVVETLKGLLAFYFCPHLGRLSDTYGRRSVLLFTVLGTCLPFCTLAFTENLWIYVAAQAVAGAFAXXXXXXXAYIADTVDMDSRAPAYGLALATFGLSFCVGPVSGSYLAQKYSRKLVFTGTLVLTILDLIYVSLVLPET 216          
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Match: A0A7S1UG73_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG73_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.610e-54
Identity = 107/188 (56.91%), Postives = 133/188 (70.74%), Query Frame = 3
Query:  384 PAEEDSRYLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGILAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMSASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYLAKMYGAET---VFAGAVLLVLVDVAYILFVLPES 938
            P      + YVLPVLF E+LA +L+K +LP  +VD+FG+ TY  I  +E VKG+LAF  CP  G+LSD  GRRR LL+TVLGT +P C+LAFT NLW +V   + +G FAAT  +TFAYIAD V  + RAPAYGLALATFGLSF IGPV G  L++ Y  ET   VF G VLL  +D+ YI++VLPE+
Sbjct:    6 PGGGSPAFAYVLPVLFLEFLATSLAKGVLPHRLVDFFGEQTYSVIAAVEAVKGLLAFYFCPYLGRLSDTEGRRRMLLLTVLGTCLPFCTLAFTENLWYYVVTQAIAGAFAATXXITFAYIADTVEVNARAPAYGLALATFGLSFCIGPVTGSVLSERY-PETPRFVFMGTVLLTAIDLLYIVYVLPET 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10076.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ60_9STRA2.540e-9350.28Hippocampus abundant transcript 1 protein (Fragmen... [more]
A0A6V3A0Z0_HETAK6.040e-7465.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CPP9_9STRA4.230e-7046.38Major facilitator superfamily domain-containing pr... [more]
A0A6H5J7G6_9PHAE1.850e-6741.23MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9D9X9_9STRA2.870e-6460.11MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S3MB15_9STRA8.670e-6257.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0Y760_AURAN1.210e-6158.79MFS domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A482SMC9_9ARCH1.280e-6159.55MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A7R9YFZ7_9STRA1.460e-5455.00Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A7S1UG73_9STRA2.610e-5456.91Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10076contigP-wetherbeei_contig10076:2..2144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FX29
Preferred nameHIAT1
PFAMsMFS_1
Model size1472
Max annot lvl2759|Eukaryota
KEGG koko:K10393
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0051179,GO:0051234,GO:0055085
Exons3
Evalue5.46e-69
EggNOG OGsKOG2816@1|root,KOG2816@2759|Eukaryota
Ec32 ortholog descriptionHippocampus abundant transcript 1 protein (Putative tetracycline transporter-like protein)
Ec32 orthologEc-10_004070.1
Descriptionfolate import across plasma membrane
Cds size957
COG categoryS
BRITEko00000,ko03036,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.5096369-UTR-P-wetherbeei_contig10076:1..2711683185853.5096369-UTR-P-wetherbeei_contig10076:1..271Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10076 2..271 -
1683185853.5400226-UTR-P-wetherbeei_contig10076:1899..21441683185853.5400226-UTR-P-wetherbeei_contig10076:1899..2144Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10076 1900..2144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.5181286-CDS-P-wetherbeei_contig10076:271..6501683185853.5181286-CDS-P-wetherbeei_contig10076:271..650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10076 272..650 -
1683185853.5252798-CDS-P-wetherbeei_contig10076:1047..13291683185853.5252798-CDS-P-wetherbeei_contig10076:1047..1329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10076 1048..1329 -
1683185853.5325036-CDS-P-wetherbeei_contig10076:1603..18991683185853.5325036-CDS-P-wetherbeei_contig10076:1603..1899Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10076 1604..1899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10076.1.1prot_P-wetherbeei_contig10076.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10076 272..1899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10076.1.1

>prot_P-wetherbeei_contig10076.1.1 ID=prot_P-wetherbeei_contig10076.1.1|Name=mRNA_P-wetherbeei_contig10076.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
MTDWLCKKFLLFIAIRVPQKLLARKQGLHLSLSISPPHSPDFTTIMPAEE
DSRYLYVLPVLFYEYLAIALSKSLLPGMMVDYFGDWTYYTIGIIETVKGI
LAFVACPIFGKLSDVIGRRRCLLMTVLGTTMPVCSLAFTSNLWVFVAVMS
ASGIFAATFPLTFAYIADYVPASRRAPAYGLALATFGLSFSIGPVAGGYL
AKMYGAETVFAGAVLLVLVDVAYILFVLPESRDVADGPGGEGPCGGSGDS
HSTFTAVAARHTGSVRAAAVATSGIGKVSSGGRPPSVGHGNSSNGWPYGP
FQANSRQCVFGCRSVLQG*
back to top

mRNA from alignment at P-wetherbeei_contig10076:2..2144-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10076.1.1 ID=mRNA_P-wetherbeei_contig10076.1.1|Name=mRNA_P-wetherbeei_contig10076.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2143bp|location=Sequence derived from alignment at P-wetherbeei_contig10076:2..2144- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTCTCTTGAGCCATCTGCATTTTGCTGCATCAGGGCACTCACTTGGC TGCGTTTTGCGTGATATTCAGCCTGTAGGGTCCTTGAGGTAGGCTGGTGA TGCACCTAGTTTTTGCGTCTGTTGCGCACTGCCGTTTGGGTTCTGATCGA CTGGTCTATTTCTCTCTAGCTTTTCTGCACCTCCTTCATCACTGCCCTCT CCTTCTAGCTTCGTTTTTGCACGCTATTCGGCCTTTAAGATACTGATGAC AGACTGGCTATGCAAGAAGTTCCTATTGTTCATCGCCATTCGGGTTCCTC AAAAGCTCCTGGCAAGGAAACAAGGTCTCCATCTTTCTCTCTCAATCTCT CCCCCCCATTCGCCAGATTTCACAACCATCATGCCCGCCGAGGAAGATAG CCGCTACCTCTACGTCTTGCCAGTGCTTTTTTACGAGTATCTCGCAATAG CGCTGTCAAAGTCGTTGCTCCCTGGGATGATGGTAGACTACTTTGGCGAC TGGACGTATTACACCATTGGCATCATCGAGACGGTCAAGGGGTGAGTGAG TGAGGGAGCCTGCGGGAATGCCTTGTCCGATTCTGCTGCCGGTTCTCTGT TTTTGGATGCTGCCCCTTCCGTGCATTTTATCAGCCTTCGGACTTGCGAA GAAAATTTCGTTGCCTACCTTCTATTTATTTCCTGACGAAGCTTTCTCTC CAGCCTGGAAAAAGGAGCAGACGCTGCATGTGCATCACCTGCAAGCTTAC TAATGATGCCAAGCCACGCCACATCCTCCCTTCGCACCTCCTCTGACCCT TTTCGCCATTCGCAGCATCCTGGCTTTCGTGGCGTGCCCGATCTTCGGCA AGCTAAGCGACGTGATTGGACGGCGGAGGTGCCTGCTGATGACGGTGCTG GGAACGACGATGCCCGTGTGCTCTCTGGCTTTCACCTCTAACCTGTGGGT TTTCGTCGCCGTCATGTCGGCCTCGGGCATCTTCGCGGCGACCTTTCCGC TGACCTTCGCCTACATTGCCGACTACGTGCCGGCGTCGCGGCGGGCCCCG GCATATGGCCTCGCCCTCGCCACCTTCGGCCTCTCCTTCTCCATCGGGTG AGGCGGTCGGCGGGGTGAAGCGCCAGACCGCTGGGGCTCACGTTCCTTTC CTCGAGCTTATTCGGAATTCGTTCCTCTCGTCCTTCAGCTTGGTTCTTCC TTGCCCAGCCCATATGCGTTTACTCTCGTCTCGATGTGTTCGGACCTCCT TTTTTCCGCTTCCTTGAACTTCTTCCCCTTCTTGTTCTCGTGACATGCAT GCGAAAAGGAACGTAAATGTGGCCCGAACCGTTTCCGGTCTGCAAGTTCT GCCGCAAACTCTCCCATCTCTTCTCTGTCCTCCTTGCGTCCTCCCCCGCC CCTCCCACCTTCTCTTCTTACCGACGGAAATGTTGATCACGCAACGGCGC AAACCACCGTCGCGCGCCTCGCTCCCTCCGCTGGGTGGTCCCAGGCCCGT CGCCGGCGGCTACCTGGCCAAGATGTACGGTGCTGAGACGGTCTTCGCTG GCGCCGTCCTCCTCGTCCTCGTGGACGTGGCCTACATTCTCTTCGTGCTG CCCGAGTCCCGCGACGTCGCCGACGGGCCCGGCGGAGAGGGCCCTTGCGG CGGCAGTGGGGACAGCCACAGCACCTTCACCGCCGTCGCCGCGAGGCATA CTGGCAGCGTGAGGGCTGCCGCTGTGGCCACGTCCGGCATTGGAAAGGTG TCGTCGGGTGGGCGACCCCCAAGTGTGGGGCACGGCAACAGCAGCAACGG CTGGCCGTACGGACCGTTTCAGGCAAATTCACGGCAATGCGTGTTTGGTT GTCGGTCGGTGTTGCAGGGGTAGGTGTTTCTCTCTTTGCGTCTGAGGGGT TGACCATGCTTCCATTTTGGTGTATTTCGACACTTTTGCCTTTCGTTTGT GTGTGTTCGTCATCATTGCGCGTTGCAGTTTGGAGATGATCTTCGTTCTC CCTGCTTCTCTCCTACCATTTTTGCTGGGTTACTGCAGCAATGGAACCCA CTGGCCTCGCTGCACGCCTTTTCTGGGAATCCTCTTCTATCGCGCATGGC GGTGATCATATTCCTGTACTACACGGGAGTGTGGGCGTTGGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10076:2..2144-

>mRNA_P-wetherbeei_contig10076.1.1 ID=mRNA_P-wetherbeei_contig10076.1.1|Name=mRNA_P-wetherbeei_contig10076.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig10076:2..2144- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGACTGGCTATGCAAGAAGTTCCTATTGTTCATCGCCATTCGGGT
TCCTCAAAAGCTCCTGGCAAGGAAACAAGGTCTCCATCTTTCTCTCTCAA
TCTCTCCCCCCCATTCGCCAGATTTCACAACCATCATGCCCGCCGAGGAA
GATAGCCGCTACCTCTACGTCTTGCCAGTGCTTTTTTACGAGTATCTCGC
AATAGCGCTGTCAAAGTCGTTGCTCCCTGGGATGATGGTAGACTACTTTG
GCGACTGGACGTATTACACCATTGGCATCATCGAGACGGTCAAGGGCATC
CTGGCTTTCGTGGCGTGCCCGATCTTCGGCAAGCTAAGCGACGTGATTGG
ACGGCGGAGGTGCCTGCTGATGACGGTGCTGGGAACGACGATGCCCGTGT
GCTCTCTGGCTTTCACCTCTAACCTGTGGGTTTTCGTCGCCGTCATGTCG
GCCTCGGGCATCTTCGCGGCGACCTTTCCGCTGACCTTCGCCTACATTGC
CGACTACGTGCCGGCGTCGCGGCGGGCCCCGGCATATGGCCTCGCCCTCG
CCACCTTCGGCCTCTCCTTCTCCATCGGGCCCGTCGCCGGCGGCTACCTG
GCCAAGATGTACGGTGCTGAGACGGTCTTCGCTGGCGCCGTCCTCCTCGT
CCTCGTGGACGTGGCCTACATTCTCTTCGTGCTGCCCGAGTCCCGCGACG
TCGCCGACGGGCCCGGCGGAGAGGGCCCTTGCGGCGGCAGTGGGGACAGC
CACAGCACCTTCACCGCCGTCGCCGCGAGGCATACTGGCAGCGTGAGGGC
TGCCGCTGTGGCCACGTCCGGCATTGGAAAGGTGTCGTCGGGTGGGCGAC
CCCCAAGTGTGGGGCACGGCAACAGCAGCAACGGCTGGCCGTACGGACCG
TTTCAGGCAAATTCACGGCAATGCGTGTTTGGTTGTCGGTCGGTGTTGCA
GGGGTAG
back to top