mRNA_P-wetherbeei_contig1007.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1007.8.1
Unique NamemRNA_P-wetherbeei_contig1007.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: D7FV35_ECTSI (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV35_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.600e-30
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVP 243
            G+DVPE +CWMR G E+R W NG+ALILDTSFEHETRN++    R V+I+D+WHP LT  EQEALAFVYDLRN+++SG +P
Sbjct:  253 GVDVPE-DCWMRVGEEKRSWENGKALILDTSFEHETRNDSRRD-RIVLIIDYWHPDLTKAEQEALAFVYDLRNKFESGEIP 331          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: K0RKH1_THAOC (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RKH1_THAOC)

HSP 1 Score: 104 bits (259), Expect = 5.020e-25
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR 249
            GL VPEG CW++SG E+R W  G+   LDTSFEH T  N T   R+V+I+DFWHP LT  E+  L FVYDLRN+++SG VP R
Sbjct:  208 GLRVPEG-CWIKSGNEERTWEEGKLTTLDTSFEHST-GNPTDGERHVLIIDFWHPDLTEAERAGLEFVYDLRNKFESGRVPFR 288          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A7S0AGB4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AGB4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.490e-25
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR 249
            GL VPEG CW++ G E+R W   +   LDTSFEH T  N T + R+V+I+DFWHP+L+  E++ALAFVYDLRN+++ G VP R
Sbjct:   17 GLKVPEG-CWIQVGDERRSWEVEKLTTLDTSFEHST-GNPTDSDRHVLIIDFWHPELSDAERKALAFVYDLRNKFERGDVPVR 97          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A7S2Y711_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y711_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.080e-24
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR 249
            GL +PE ECW++ G E+R W  G+   LDTSF H T  N +   R+V+I+DFWHP+LT  E+ AL FVYDLRN+++SGL+P R
Sbjct:   70 GLRIPE-ECWIQVGDERRSWEEGKLTTLDTSFTHST-GNPSKEDRHVLIIDFWHPELTEAERAALDFVYDLRNKFESGLIPFR 150          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A7S1VTT1_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VTT1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.780e-24
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR 249
            GL +PEG CW++SG E+R W  G+   LDTSFEH T N +    R+V+I+DFWHP+L+  E+ AL FVYDLRN+++SG +P R
Sbjct:  182 GLRIPEG-CWIQSGEERRGWDVGKLTTLDTSFEHSTLNPSADQERHVLIIDFWHPELSEAERAALEFVYDLRNKFESGQIPPR 263          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A1E7EX96_9STRA (Asp_Arg_Hydrox-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EX96_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.140e-24
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR----PTVARPAQG 276
            GL VP+G CW++ G E++ W   + L LDTSF H T  N T+  RYV+I+D WH +LT PEQ AL FVYDLRN+++SG VP R    P VA+  +G
Sbjct:  238 GLQVPDG-CWIQVGNERKSWEKQKLLTLDTSFVHST-GNPTSDDRYVLIIDCWHSELTEPEQAALEFVYDLRNKFESGSVPVRKLKQPVVAKEEEG 331          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A7S1VX42_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VX42_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.260e-24
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR 249
            GL VPEG CW++ G E++ W  G+   LDTSFEH T  N T + R+V+I+DFWHP+LTS E+ AL FVYDLRN+++ G +P R
Sbjct:  249 GLKVPEG-CWIQVGDERKSWSEGKLTTLDTSFEHST-GNPTDSDRHVLIIDFWHPELTSAERAALEFVYDLRNKFEKGKIPFR 329          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A7S3VEB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEB5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.480e-23
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR 249
            GL +P+G CWM+SG E++ W+ G+   LDTSFEH T  N T   R+V+I+D+WHP LT  E+ AL FVYDLRN+++SG +P R
Sbjct:  232 GLKIPDG-CWMKSGDEEQTWQEGKLTTLDTSFEHST-GNPTDDDRHVLIIDYWHPDLTIAERAALEFVYDLRNKFESGNIPFR 312          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A7S2LMR1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LMR1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.140e-23
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTR 249
            GL VPEG  W++ GGE R W  G+  I+DTSFEH T  N T + R+V+I+DFWHP LT+ E+  L F+Y+LRN+++SGLVP R
Sbjct:  299 GLQVPEG-VWVKVGGETRSWTEGKLTIMDTSFEHST-GNPTDSDRHVLIIDFWHPDLTAGERACLNFIYELRNKFESGLVPYR 379          
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Match: A0A7R9ZQ63_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQ63_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.250e-23
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 GLDVPEGECWMRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSPEQEALAFVYDLRNRYDSGLVPTRPTVARPAQ 273
            G+ +P+ +CWM  GGE+R W  G+   +DTSF H T  N T   R+V+I+D+WHP+LT  E  AL FVYDLRN+++SGLVP R   +  AQ
Sbjct:  235 GVKIPK-DCWMEVGGERRGWEEGKLTTIDTSFTHST-GNPTEEDRHVLIIDYWHPELTQAETAALEFVYDLRNKFESGLVPFRQPRSLQAQ 323          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1007.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV35_ECTSI4.600e-3066.67Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
K0RKH1_THAOC5.020e-2557.83Asp_Arg_Hydrox domain-containing protein n=1 Tax=T... [more]
A0A7S0AGB4_9STRA8.490e-2555.42Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2Y711_9STRA1.080e-2454.22Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1VTT1_9STRA1.780e-2454.22Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A1E7EX96_9STRA6.140e-2452.08Asp_Arg_Hydrox-domain-containing protein n=1 Tax=F... [more]
A0A7S1VX42_9STRA7.260e-2455.42Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3VEB5_9STRA1.480e-2354.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2LMR1_9STRA2.140e-2355.42Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9ZQ63_9STRA4.250e-2350.55Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1007contigP-wetherbeei_contig1007:7650..7925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV35
PFAMsAsp_Arg_Hydrox
Model size276
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.56e-25
EggNOG OGsCOG3555@1|root,KOG3696@2759|Eukaryota
Descriptionpeptide-aspartate beta-dioxygenase activity
Cds size246
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.2689703-CDS-P-wetherbeei_contig1007:7649..78951683185853.2689703-CDS-P-wetherbeei_contig1007:7649..7895Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1007 7650..7895 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.277917-UTR-P-wetherbeei_contig1007:7895..79251683185853.277917-UTR-P-wetherbeei_contig1007:7895..7925Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1007 7896..7925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1007.8.1prot_P-wetherbeei_contig1007.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1007 7650..7895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1007.8.1

>prot_P-wetherbeei_contig1007.8.1 ID=prot_P-wetherbeei_contig1007.8.1|Name=mRNA_P-wetherbeei_contig1007.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MRSGGEQREWRNGEALILDTSFEHETRNNATTAARYVMIVDFWHPQLTSP
EQEALAFVYDLRNRYDSGLVPTRPTVARPAQG
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mRNA from alignment at P-wetherbeei_contig1007:7650..7925-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1007.8.1 ID=mRNA_P-wetherbeei_contig1007.8.1|Name=mRNA_P-wetherbeei_contig1007.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig1007:7650..7925- (Phaeothamnion wetherbeei SAG_119_79)
GGGCTCGATGTGCCGGAAGGAGAATGCTGGATGCGGTCCGGCGGCGAGCA GCGTGAGTGGCGCAATGGCGAAGCGCTGATTCTCGACACAAGCTTCGAGC ACGAGACGCGCAACAACGCCACAACCGCTGCCCGCTACGTCATGATCGTC GACTTCTGGCACCCGCAGCTGACGTCGCCCGAACAGGAGGCGCTGGCCTT CGTGTACGACTTGCGGAACCGCTACGATTCTGGGCTAGTGCCGACGCGGC CGACGGTGGCGCGGCCGGCGCAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1007:7650..7925-

>mRNA_P-wetherbeei_contig1007.8.1 ID=mRNA_P-wetherbeei_contig1007.8.1|Name=mRNA_P-wetherbeei_contig1007.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig1007:7650..7925- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTCCGGCGGCGAGCAGCGTGAGTGGCGCAATGGCGAAGCGCTGAT
TCTCGACACAAGCTTCGAGCACGAGACGCGCAACAACGCCACAACCGCTG
CCCGCTACGTCATGATCGTCGACTTCTGGCACCCGCAGCTGACGTCGCCC
GAACAGGAGGCGCTGGCCTTCGTGTACGACTTGCGGAACCGCTACGATTC
TGGGCTAGTGCCGACGCGGCCGACGGTGGCGCGGCCGGCGCAGGGG
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