mRNA_P-wetherbeei_contig1007.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1007.3.1
Unique NamemRNA_P-wetherbeei_contig1007.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: D8LS41_ECTSI (Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS41_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 4.820e-92
Identity = 173/292 (59.25%), Postives = 190/292 (65.07%), Query Frame = 1
Query:   22 VALTREAGKNGKLASLLAERGIRSVEIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAGKP--PVSVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXT----------------------GPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAARRGVA--------------------GCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARALQA 765
            VALTREAGKNGKLA LL + GI SVE+PCIAH DG D  LLP  LA+   +YV +TSPEAA VFL GW  AG P  PV VACVGKATG+AL  GGV+PVFTPSKA GETLA E+PL         XXXX                       GP   +LYPAS+KAQ TLE GL ARGF VRRL+ YDTVPA W  + EAAAA A+VAAFGSPSAVKTWAAR GV                     G LAACIGETSA ACR+ GW E AIFYPE+PGM+GW  AV +AL A
Sbjct:   75 VALTREAGKNGKLAKLLTDAGISSVEVPCIAHQDGPDLPLLPAALADPGLAYVVVTSPEAAKVFLAGWAKAGVPGVPVPVACVGKATGDALRAGGVSPVFTPSKATGETLAAEIPLPPSAPADDTXXXXXXXXXXXXXXXXXXXXXXXXXXXGP--RVLYPASAKAQNTLESGLRARGFEVRRLNTYDTVPATWDESAEAAAAGASVAAFGSPSAVKTWAARMGVVAAGVXXXXXXXXXXXXXXXXGALAACIGETSARACREAGWAESAIFYPEKPGMEGWAKAVGQALAA 364          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: A0A835YHW0_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW0_9STRA)

HSP 1 Score: 246 bits (628), Expect = 2.260e-77
Identity = 137/247 (55.47%), Postives = 164/247 (66.40%), Query Frame = 1
Query:   19 TVALTREAGKNGKLASLLAERGIRSVEIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAGKPPVSVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAARRGVAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARAL 759
            TVALTREAG NGKL +LL  +GI  VE+PCIA  DG DS  LP  LA  ++ YV +TSPE+A VFL+ W  A +P VSVACVG ATG+AL   G+ P FTPS+A GE LA E+PL              G    +LYPAS++A  T+++GL ARGF V RL+ YDT  A WS AD + AA AAVAAFGSPSAVK W +  GV    AACIG TSA A +  GW ++ IF+PE+PGM GW  AV  AL
Sbjct:   35 TVALTREAGNNGKLEALLVAKGINCVEVPCIAFTDGPDSAQLPQHLASGAYDYVIVTSPESAKVFLQAWDAAERPNVSVACVGTATGDALRARGLEPAFTPSRAYGEDLAAEIPLPPSAAVGE------GGAPRVLYPASTRAPGTVQEGLEARGFHVVRLNTYDTGAAAWSDADLSNAARAAVAAFGSPSAVKAWVSHMGVEAAAAACIGVTSAKAAKAAGWADDRIFWPEKPGMPGWAQAVEEAL 275          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: A0A7S0HHZ2_9CRYP (Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHZ2_9CRYP)

HSP 1 Score: 231 bits (589), Expect = 7.050e-71
Identity = 136/248 (54.84%), Postives = 166/248 (66.94%), Query Frame = 1
Query:   22 VALTREAGKNGKLASLLAERGIRSVEIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAGKPPVSVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVAS--ILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAARRGVAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARAL 759
            VALTRE GKN KL  +L+E+GIR+VE+PCIA   G D+E LP  L E  + YV +TSPEAASVFL  WR+AG+P + VACVG  T +AL+ GG+ PVF PSKA G+TLA ELP               GP  S  +LYPAS+KA+  ++ GL ARGF+V RL+ YDTV A WS  +    A+AAV A  SPSAVKTWA R G     AACIGETSA AC++ G+  E +F+PE PG+ GW  AV  AL
Sbjct:   88 VALTRELGKNSKLEKVLSEKGIRTVELPCIAFEAGTDAETLPKALQE-EWEYVVVTSPEAASVFLDAWREAGEPSLPVACVGAGTKQALQEGGIEPVFMPSKATGKTLADELP---------------GPRRSGRVLYPASAKARTEVQGGLTARGFSVTRLNTYDTVSATWSDKELQMGASAAVIALASPSAVKTWAERLGTKQ-YAACIGETSAAACKELGF--EHVFWPESPGILGWAQAVHDAL 316          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: A0A7S2PU27_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU27_9STRA)

HSP 1 Score: 231 bits (588), Expect = 9.390e-71
Identity = 138/264 (52.27%), Postives = 162/264 (61.36%), Query Frame = 1
Query:   22 VALTREAGKNGKL-ASLLAERGIRSV------------EIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAGKPPV-SVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAARRGVAGC---LAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARALQ 762
            +ALTRE GKNGKL  +L +   I+ +            EIPCIAHADG DS++L  TL+   F YVAITSPEAA VF   W D G+P V SVA VGKAT EAL+  G+   F PSKA   TL  ELP               G   S+LYPAS+KAQ TL++GL  RGF V RL+ YDTV A W+  +E+ A +  VA F SPSAVK W        C   LAACIGETS  AC+K GW EE IFYPE+PG+DGW  +VA ALQ
Sbjct:   63 IALTREEGKNGKLNKALQSNSNIKQIISSSSGSAMEVNEIPCIAHADGPDSDILGKTLSSSDFDYVAITSPEAAKVFATAWIDEGRPKVGSVAAVGKATQEALKAYGIDVAFVPSKATAATLVKELPTLEEATNE-------GRSTSLLYPASAKAQDTLQNGLEERGFIVTRLNTYDTVTATWTPEEESLAKSTTVACFASPSAVKAWVKNTAQLDCPRALAACIGETSFAACKKNGWKEEDIFYPEKPGIDGWAESVANALQ 319          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: L1JFY6_GUITC (Uroporphyrinogen-III synthase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JFY6_GUITC)

HSP 1 Score: 226 bits (575), Expect = 1.280e-69
Identity = 134/249 (53.82%), Postives = 164/249 (65.86%), Query Frame = 1
Query:   22 VALTREAGKNGKLASLLAERGIRSVEIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAGKPPVSVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVAS--ILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAARRGVAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARALQ 762
            VALTRE GKN KL   L+E+G+R+VE+PCIA   G DS+ LP  L E  + YV +TSPEAASVFL  WR A +P + VACVG  T +AL+ GG+ PVF PSKA G+TLA ELP               GP  +  +LYPAS+KA+  ++ GL ARGF V RL+ YDTV A WS  +   AA+AAV A  SPSAVKTWA R G     AACIGETSA AC++ G+  E +F+PE PG+ GW  AV  AL+
Sbjct:   24 VALTRELGKNLKLEKALSEKGVRTVELPCIAFEAGIDSDSLPSALKE-DWEYVVVTSPEAASVFLDAWRLASQPSLQVACVGTGTKQALQEGGIEPVFMPSKATGKTLADELP---------------GPQGNGRVLYPASAKARTEVQGGLTARGFTVTRLNTYDTVSATWSEQELQMAASAAVVALASPSAVKTWAERLGTKQ-YAACIGETSASACKELGF--EHVFWPESPGIPGWAQAVHDALE 253          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: A0A6V1PSP3_HETAK (Uroporphyrinogen-III synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PSP3_HETAK)

HSP 1 Score: 221 bits (563), Expect = 1.670e-67
Identity = 131/252 (51.98%), Postives = 159/252 (63.10%), Query Frame = 1
Query:    7 QVDVTVALTREAGKNGKLASLLAERGIRSVEIPCIAHADGKDSELLPPTLA-EFSFSYVAITSPEAASVFLKGWRDAGKPPVSVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAARRGVAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARAL 759
            Q+D  VALTREAGKNGKL  LL + G   VE+PCI HA G+D + L P L+ +  + YV ITSPEAA VFLK W+ AGKP VSVA VG AT E L  GG+TP F PSKA    L+ ELPL                ++ +LYPAS KA+ TLE GLAARGF+V RL+ Y T+P  W+  D  AAA+A V A  SP+A   WA   G     AACIG T+A  C+K+G+    I+ PE+PGMDG V AV  A+
Sbjct:   40 QLDAKVALTREAGKNGKLKKLLIDEGFEVVELPCIRHARGEDLDKLAPALSSDEPYDYVIITSPEAADVFLKEWKKAGKPQVSVASVGAATSETLMEGGITPAFEPSKATAAVLSEELPLNG--------------LSRVLYPASEKAKETLESGLAARGFSVTRLNTYTTLPTKWNEMDYVAAASADVVALASPTAADAWAGLVGRPRKPAACIGLTTAEECKKRGFG--LIYCPEKPGMDGLVGAVKLAV 275          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: B8BVT8_THAPS (Uroporphyrinogen-III synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVT8_THAPS)

HSP 1 Score: 212 bits (539), Expect = 2.410e-63
Identity = 132/263 (50.19%), Postives = 156/263 (59.32%), Query Frame = 1
Query:   22 VALTREAGKNGKLA-SLLAERGIRSV-----------EIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAGKPPVS-VACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAARRG----VAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARAL 759
            VALTRE GKN KL  +LL+   I+ +           EIPCI HADG D++ L PTLA   F YVAITSPEAA V +  W +AG+P +  VA VGKAT E+L+  G+   F PSKA   TL  ELPL              G  +++ YPAS+KA  TL++GL  RGF V RL+ YDTVPA W       A +A VA F SPSAVK W          A   AACIGETSA ACRK  W E  IFYPE+PG+DGW  +VA AL
Sbjct:   67 VALTREEGKNDKLRKALLSNEHIQQLSQSSGVAVDIHEIPCIEHADGPDTDKLVPTLASTQFDYVAITSPEAAKVLVNAWIEAGRPQLGKVAAVGKATQESLKEFGIEVAFVPSKATAATLVKELPLSDAATKE-------GRSSTLFYPASNKAADTLQNGLEERGFDVMRLNTYDTVPASWDEEQTLLAQSANVACFASPSAVKAWLKNTDGMNKPARAKAACIGETSAEACRKNQWDESDIFYPEKPGVDGWAVSVADAL 322          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: A0A7S2EAC0_TRICV (Uroporphyrinogen-III synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAC0_TRICV)

HSP 1 Score: 207 bits (526), Expect = 8.680e-61
Identity = 134/271 (49.45%), Postives = 158/271 (58.30%), Query Frame = 1
Query:   22 VALTREAGKNGKLA-SLLAERGIRSV------EIPCIAHADGKDSELLPPTLAEF----SFSYVAITSPEAASVFLKGWRDAGKPPVS-VACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTW--------AARRGVAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARALQARVA 774
            VALTRE GKN KL  +LL+   I         EIPCIAHADG DS++L P L+      +F YVA+TSPEAA V    W  AG+P +  V  VGKAT EAL R G+   F PSKA  +TL  ELP               G + ++LYPAS+KA++TLE GL  RGF V RLD YDT+PA W+   +  A    VA F SPSA+  W          RRG     AACIGETSA  CR  GW E  IFYPE+PG+DGW  AVA AL+A  A
Sbjct:  115 VALTREDGKNAKLLRALLSHPRIGDAIPVDLEEIPCIAHADGPDSDMLGPALSGKGGFGAFDYVAVTSPEAARVLAAAWEAAGRPDLGEVVAVGKATEEALLREGIRVGFVPSKATAKTLVEELP-------ESGDATMEGRLTTLLYPASAKAKKTLEQGLEERGFVVTRLDTYDTIPATWTPEKKNKADLVRVACFASPSAITGWLQNLEDTEGGRRGNT-IAAACIGETSAQMCRDMGWDEGNIFYPEKPGVDGWAEAVADALEAVAA 377          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: A0A1Z5JYL0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYL0_FISSO)

HSP 1 Score: 202 bits (515), Expect = 3.590e-60
Identity = 122/246 (49.59%), Postives = 143/246 (58.13%), Query Frame = 1
Query:   25 ALTREAGKNGKLASLLAERGIRSVEIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAGKP-PVSVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAAR-RGVAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARA 756
            A TRE GKN +L   +    +  VE+PCIAHADG D   L  TL    + YV ITSPEAA V    W+    P P +V  VGKAT +AL+  G+   F PSKA  E L  ELPL                   +LYPAS +AQ TL+DGL  RGF V RL+ YDTV A W+  +   AA   +A F SPSAVK W          LAACIGETSA ACR++GW EE IFYPE+PGM+GWV AVA A
Sbjct:   50 AATREQGKNEQLMKGIRGIHLHPVELPCIAHADGPDFSSLQETLQNNHWDYVTITSPEAARVLSSAWQHCTWPTPPAVVAVGKATEDALQAAGIAVAFCPSKATAEVLVQELPLPSQQQQQP----------KVLYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAHWNEHETVQAAQVQIACFASPSAVKGWLLNTENNNAVLAACIGETSAKACRERGWDEEHIFYPEKPGMEGWVNAVAEA 285          
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Match: A0A1Z5JNA0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNA0_FISSO)

HSP 1 Score: 202 bits (513), Expect = 7.160e-60
Identity = 122/248 (49.19%), Postives = 145/248 (58.47%), Query Frame = 1
Query:   25 ALTREAGKNGKLASLLAERGIRSVEIPCIAHADGKDSELLPPTLAEFSFSYVAITSPEAASVFLKGWRDAG---KPPVSVACVGKATGEALERGGVTPVFTPSKANGETLATELPLXXXXXXXXXXXXXTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDTVPADWSAADEAAAATAAVAAFGSPSAVKTWAAR-RGVAGCLAACIGETSAVACRKQGWPEEAIFYPEQPGMDGWVAAVARA 756
            A TRE GKN +L   +    +  VE+PCIAHADG D   L  TL    + YV ITSPEAA V    W+       PP +V  VGKAT +AL+  G+T  F PSKA  E L  ELPL             +     +LYPAS +AQ TL+DGL  RGF V RL+ YDTV A W+  +   AA   +A F SPSAVK W          LAACIGETSA ACR++GW EE IFYP++PGM+GWV AVA A
Sbjct:   50 AATREQGKNEQLMKGIRAIHLNPVELPCIAHADGPDFSSLQETLETNPWDYVTITSPEAARVLSSAWQHCTWQTTPPPAVVAVGKATEDALQASGITVTFCPSKATAEVLVQELPLP------------SSQQPRVLYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAQWNEHETNMAAQVQIACFASPSAVKGWLLNTENNHQVLAACIGETSAKACRERGWNEEHIFYPDKPGMEGWVDAVAEA 285          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1007.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS41_ECTSI4.820e-9259.25Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus T... [more]
A0A835YHW0_9STRA2.260e-7755.47Uroporphyrinogen-III synthase n=1 Tax=Tribonema mi... [more]
A0A7S0HHZ2_9CRYP7.050e-7154.84Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi ... [more]
A0A7S2PU27_9STRA9.390e-7152.27Uroporphyrinogen-III synthase n=1 Tax=Skeletonema ... [more]
L1JFY6_GUITC1.280e-6953.82Uroporphyrinogen-III synthase n=2 Tax=Guillardia t... [more]
A0A6V1PSP3_HETAK1.670e-6751.98Uroporphyrinogen-III synthase n=1 Tax=Heterosigma ... [more]
B8BVT8_THAPS2.410e-6350.19Uroporphyrinogen-III synthase n=1 Tax=Thalassiosir... [more]
A0A7S2EAC0_TRICV8.680e-6149.45Uroporphyrinogen-III synthase n=1 Tax=Trieres chin... [more]
A0A1Z5JYL0_FISSO3.590e-6049.59Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]
A0A1Z5JNA0_FISSO7.160e-6049.19Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1007contigP-wetherbeei_contig1007:3078..3986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS41
Preferred nameUROS
PFAMsHEM4
Model size909
Max annot lvl2759|Eukaryota
KEGG rclassRC01861
KEGG koko:K01719
KEGG ReactionR03165
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004852,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006725,GO:0006778,GO:0006779,GO:0006780,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046502,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue8.22e-43
EggNOG OGsCOG1587@1|root,2QST9@2759|Eukaryota
Ec32 ortholog descriptionuroporphyrinogen synthase, putative chloroplast precursor
Ec32 orthologEc-12_004890.1
EC4.2.1.75
Descriptionuroporphyrinogen III biosynthetic process
Cds size414
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.148031-UTR-P-wetherbeei_contig1007:3077..32061683185853.148031-UTR-P-wetherbeei_contig1007:3077..3206Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1007 3078..3206 -
1683185853.1704001-UTR-P-wetherbeei_contig1007:3620..39861683185853.1704001-UTR-P-wetherbeei_contig1007:3620..3986Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1007 3621..3986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.1595664-CDS-P-wetherbeei_contig1007:3206..36201683185853.1595664-CDS-P-wetherbeei_contig1007:3206..3620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1007 3207..3620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1007.3.1prot_P-wetherbeei_contig1007.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1007 3207..3620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1007.3.1

>prot_P-wetherbeei_contig1007.3.1 ID=prot_P-wetherbeei_contig1007.3.1|Name=mRNA_P-wetherbeei_contig1007.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MAAAAAAAAAAGTGPVASILYPASSKAQRTLEDGLAARGFAVRRLDVYDT
VPADWSAADEAAAATAAVAAFGSPSAVKTWAARRGVAGCLAACIGETSAV
ACRKQGWPEEAIFYPEQPGMDGWVAAVARALQARVAS*
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mRNA from alignment at P-wetherbeei_contig1007:3078..3986-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1007.3.1 ID=mRNA_P-wetherbeei_contig1007.3.1|Name=mRNA_P-wetherbeei_contig1007.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig1007:3078..3986- (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGCAGGTCGATGTCACCGTGGCTTTGACGCGCGAGGCTGGGAAGAA CGGAAAGCTTGCTTCGCTTCTCGCCGAGCGAGGCATCCGGAGCGTCGAGA TTCCTTGCATCGCACATGCAGACGGCAAAGACTCCGAGCTGCTTCCTCCT ACGCTGGCCGAGTTCAGCTTTTCCTACGTTGCCATCACCTCGCCAGAGGC CGCGAGCGTCTTTTTGAAAGGATGGCGGGATGCGGGCAAGCCTCCCGTTT CGGTCGCTTGCGTCGGCAAAGCCACGGGAGAAGCCCTGGAACGCGGCGGC GTCACGCCGGTGTTCACCCCGAGCAAAGCCAATGGGGAGACACTGGCAAC GGAGCTCCCGCTCCCGATGGCGGCCGCGGCGGCGGCGGCGGCGGCAGCCG GAACGGGGCCGGTCGCATCCATTCTCTACCCGGCGTCCTCCAAGGCGCAG CGGACGCTGGAGGACGGCCTGGCGGCCCGCGGTTTCGCAGTGCGCCGCCT CGATGTCTACGACACGGTGCCCGCCGACTGGAGCGCCGCCGACGAGGCGG CCGCCGCCACCGCTGCAGTCGCCGCCTTCGGCAGCCCCAGCGCCGTCAAG ACATGGGCGGCACGGCGCGGCGTCGCTGGCTGCCTGGCGGCATGCATCGG CGAGACAAGCGCTGTGGCGTGCCGCAAGCAGGGCTGGCCGGAGGAGGCCA TCTTTTACCCCGAGCAGCCGGGCATGGACGGGTGGGTGGCCGCGGTGGCT CGGGCGCTCCAGGCCCGCGTGGCGAGCTGAAGGCTCTGGCAACTAGCAAC TTCGTGGACTTGACACATAAAATAGAACCGATAGACTAGAAAACGAAGGA AGGTGGAAGGATACGACGCGCGTTTCCTCTCAATCGCAAATCCCACGACG AAGTTGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1007:3078..3986-

>mRNA_P-wetherbeei_contig1007.3.1 ID=mRNA_P-wetherbeei_contig1007.3.1|Name=mRNA_P-wetherbeei_contig1007.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig1007:3078..3986- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCGCGGCGGCGGCGGCGGCGGCAGCCGGAACGGGGCCGGTCGC
ATCCATTCTCTACCCGGCGTCCTCCAAGGCGCAGCGGACGCTGGAGGACG
GCCTGGCGGCCCGCGGTTTCGCAGTGCGCCGCCTCGATGTCTACGACACG
GTGCCCGCCGACTGGAGCGCCGCCGACGAGGCGGCCGCCGCCACCGCTGC
AGTCGCCGCCTTCGGCAGCCCCAGCGCCGTCAAGACATGGGCGGCACGGC
GCGGCGTCGCTGGCTGCCTGGCGGCATGCATCGGCGAGACAAGCGCTGTG
GCGTGCCGCAAGCAGGGCTGGCCGGAGGAGGCCATCTTTTACCCCGAGCA
GCCGGGCATGGACGGGTGGGTGGCCGCGGTGGCTCGGGCGCTCCAGGCCC
GCGTGGCGAGCTGA
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