mRNA_P-wetherbeei_contig1007.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1007.1.1
Unique NamemRNA_P-wetherbeei_contig1007.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: D8LF20_ECTSI (Non-specific serine/threonine protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF20_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.150e-46
Identity = 88/143 (61.54%), Postives = 108/143 (75.52%), Query Frame = 1
Query:   16 LELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENMKGQPKPERALRIAQAIGAAVALIHDAGVIHGDLTTSNFMLRGAWGGGD 444
            +ELLSQGAEARVFAT FCGRPAVVKERF K YR LPALD+KLT  RTLQE RC +K R AGV TPC+Y +DS  ++I ME++ G+T KQ+L + ++ +     AL++A  IG  VA +HDA V+HGDLTTSNFM+R   G GD
Sbjct:    1 MELLSQGAEARVFATTFCGRPAVVKERFRKTYR-LPALDEKLTTKRTLQEARCMLKARKAGVRTPCLYQLDSANTKITMEKVDGITAKQFLLDCLQ-KGDSAAALKVAGEIGKMVAKMHDAQVVHGDLTTSNFMVRSGPGEGD 141          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: A0A8K1CI69_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI69_PYTOL)

HSP 1 Score: 146 bits (368), Expect = 2.670e-41
Identity = 80/138 (57.97%), Postives = 100/138 (72.46%), Query Frame = 1
Query:   22 LLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENMKGQPK--PERALRIAQAIGAAVALIHDAGVIHGDLTTSNFMLRGA 429
            L+SQGAEA+V+ TEF GRP +VKER  K YR LP LD KL+  R +QE RC +K R AGV TPCIY++D D  RIY E++ G +VK++LR   K  PK  PE A R+A +IGAA+A +HDA ++HGDLTTSN ML  A
Sbjct:    8 LISQGAEAKVYETEFSGRPCIVKERIKKSYR-LPILDTKLSHRRLVQEARCIMKCRKAGVLTPCIYLIDEDNGRIYTEKIQGGSVKEYLRAAYKKDPKYGPE-ATRLAYSIGAAIAKMHDADIVHGDLTTSNMMLSSA 143          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: A0A2D4BFR4_PYTIN (Non-specific serine/threonine protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFR4_PYTIN)

HSP 1 Score: 142 bits (359), Expect = 6.250e-40
Identity = 75/134 (55.97%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   22 LLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENMKGQPK-PERALRIAQAIGAAVALIHDAGVIHGDLTTSNFML 420
            L+SQGAEARV+ TEFCGRP +VKER  K YR LP LD KL+  R +QE RC +K R AGV TPCIY++D D  R+  E++ G +VK++L    K  P   + AL++A  IGAA+A +HDA ++HGDLTTSN ML
Sbjct:    9 LISQGAEARVYETEFCGRPCIVKERIKKAYR-LPVLDAKLSHRRLVQEARCIMKCRKAGVITPCIYLIDEDHGRLXTEKIQGGSVKEYLXTAYKKDPNYGDNALKLAYQIGAAIAKMHDADIVHGDLTTSNMML 141          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: A0A067CZW3_SAPPC (Non-specific serine/threonine protein kinase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZW3_SAPPC)

HSP 1 Score: 139 bits (350), Expect = 1.420e-38
Identity = 74/142 (52.11%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    4 ANDRLELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRE--NMKGQPKPERALRIAQAIGAAVALIHDAGVIHGDLTTSNFMLR 423
            +   +E+LSQGAEA V+ T F GRP V+KER  K YR LP LD+KL+  R +QE RC++K R AGVDTPCI ++D    R++MER+ GL+VKQWL    +   Q     A  +A  IG AVA +HDA ++HGDLTTSN M +
Sbjct:    3 STSEMEVLSQGAEAIVYGTTFAGRPCVIKERVVKAYR-LPQLDKKLSHRRLVQEARCNMKCRKAGVDTPCILLIDETKGRLFMERIIGLSVKQWLFNMYDAATQTYAPAAKELAYQIGVAVARMHDADIVHGDLTTSNLMKK 143          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: A0A0W8DQW7_PHYNI (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DQW7_PHYNI)

HSP 1 Score: 136 bits (342), Expect = 2.900e-38
Identity = 74/135 (54.81%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   19 ELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENMKGQPK-PERALRIAQAIGAAVALIHDAGVIHGDLTTSNFML 420
            +L+SQGAEA+VF T+F GRP +VKER  K YR LP LD+KL+  R +QE RC +K R AGV TP I++VD D SR+Y+E++ G ++K +LR   K  PK    AL+ A  IG A+A +HDA ++HGDLTTSN ML
Sbjct:    7 QLISQGAEAKVFETDFAGRPCIVKERVKKSYR-LPVLDKKLSHRRLVQEARCILKCRRAGVLTPVIFLVDEDNSRLYLEKVEGGSLKDYLRRAYKLDPKYGNEALKKAYHIGEAIAKMHDADIVHGDLTTSNMML 140          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: A0A0P1B2T3_PLAHL (Non-specific serine/threonine protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2T3_PLAHL)

HSP 1 Score: 137 bits (346), Expect = 5.550e-38
Identity = 75/141 (53.19%), Postives = 100/141 (70.92%), Query Frame = 1
Query:    1 MANDRLELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENMKGQPK-PERALRIAQAIGAAVALIHDAGVIHGDLTTSNFML 420
            MA ++ +L+SQGAEA+V+ T+F GR  +VKER  K YR LP LD+KL+  R +QEVRC +K R AG+ TP IYMVD D SR+YME++ G ++K +LR   K  P    +A + A  IG A+A +HDA ++HGDLTTSN ML
Sbjct:    1 MAEEKWQLISQGAEAKVYETDFVGRACIVKERVKKSYR-LPVLDKKLSHRRLVQEVRCILKCRRAGILTPVIYMVDEDKSRLYMEKVLGGSLKDYLRRAYKLDPTYGAQATQKAYHIGEAIAKMHDADIVHGDLTTSNMML 140          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: W4FYS2_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FYS2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.020e-38
Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   19 ELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRE--NMKGQPKPERALRIAQAIGAAVALIHDAGVIHGDLTTSNFMLR 423
            E+LSQGAEA V+AT+F GRP V+KER  K YR L  LD+KL+  R +QE RC+ K R AGVDTPCI+++D    R+YMER+ G++ KQ+L +  N   Q     AL +   IG A+A +HDA ++HGDLTTSN M +
Sbjct:   11 EVLSQGAEAIVYATDFAGRPCVIKERVVKTYR-LRQLDKKLSHRRLVQEARCNFKCRKAGVDTPCIFLIDEAKGRLYMERIQGMSAKQYLYDSYNATTQQYATDALAVCYQIGVAIARMHDADIVHGDLTTSNLMKK 146          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: H3GJN2_PHYRM (Non-specific serine/threonine protein kinase n=17 Tax=Phytophthora TaxID=4783 RepID=H3GJN2_PHYRM)

HSP 1 Score: 136 bits (343), Expect = 1.570e-37
Identity = 76/141 (53.90%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 MANDRLELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENMKGQPK-PERALRIAQAIGAAVALIHDAGVIHGDLTTSNFML 420
            MA    +L+SQGAEA+VF T+F GR  VVKER  K YR LP LD+KL+  R +QE RC +K R AGV TP I++VD D SR+Y+E++ G ++K +LR   K  PK    AL+ A  IG A+A +HDA ++HGDLTTSN ML
Sbjct:    1 MAETEWQLISQGAEAKVFETDFAGRSCVVKERVKKSYR-LPVLDKKLSHRRLVQEARCILKCRRAGVLTPAIFLVDEDKSRLYLEKVPGGSLKDYLRRAYKLDPKYGPMALKKAYQIGEAIAKMHDADIVHGDLTTSNMML 140          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: W2GQB4_PHYPR (Non-specific serine/threonine protein kinase n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2GQB4_PHYPR)

HSP 1 Score: 136 bits (342), Expect = 1.790e-37
Identity = 74/135 (54.81%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   19 ELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENMKGQPK-PERALRIAQAIGAAVALIHDAGVIHGDLTTSNFML 420
            +L+SQGAEA+VF T+F GRP +VKER  K YR LP LD+KL+  R +QE RC +K R AGV TP I++VD D SR+Y+E++ G ++K +LR   K  PK    AL+ A  IG A+A +HDA ++HGDLTTSN ML
Sbjct:    7 QLISQGAEAKVFETDFAGRPCIVKERVKKSYR-LPVLDKKLSHRRLVQEARCILKCRRAGVLTPVIFLVDEDNSRLYLEKVEGGSLKDYLRRAYKLDPKYGNEALKKAYHIGEAIAKMHDADIVHGDLTTSNMML 140          
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Match: W4FZ43_9STRA (Non-specific serine/threonine protein kinase n=3 Tax=Aphanomyces TaxID=100860 RepID=W4FZ43_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.500e-37
Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   19 ELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKARTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRE--NMKGQPKPERALRIAQAIGAAVALIHDAGVIHGDLTTSNFMLR 423
            E+LSQGAEA V+AT+F GRP V+KER  K YR L  LD+KL+  R +QE RC+ K R AGVDTPCI+++D    R+YMER+ G++ KQ+L +  N   Q     AL +   IG A+A +HDA ++HGDLTTSN M +
Sbjct:   11 EVLSQGAEAIVYATDFAGRPCVIKERVVKTYR-LRQLDKKLSHRRLVQEARCNFKCRKAGVDTPCIFLIDEAKGRLYMERIQGMSAKQYLYDSYNATTQQYATDALAVCYQIGVAIARMHDADIVHGDLTTSNLMKK 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1007.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF20_ECTSI1.150e-4661.54Non-specific serine/threonine protein kinase n=2 T... [more]
A0A8K1CI69_PYTOL2.670e-4157.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BFR4_PYTIN6.250e-4055.97Non-specific serine/threonine protein kinase n=1 T... [more]
A0A067CZW3_SAPPC1.420e-3852.11Non-specific serine/threonine protein kinase n=4 T... [more]
A0A0W8DQW7_PHYNI2.900e-3854.81Non-specific serine/threonine protein kinase n=1 T... [more]
A0A0P1B2T3_PLAHL5.550e-3853.19Non-specific serine/threonine protein kinase n=1 T... [more]
W4FYS2_9STRA7.020e-3852.55Non-specific serine/threonine protein kinase n=1 T... [more]
H3GJN2_PHYRM1.570e-3753.90Non-specific serine/threonine protein kinase n=17 ... [more]
W2GQB4_PHYPR1.790e-3754.81Non-specific serine/threonine protein kinase n=6 T... [more]
W4FZ43_9STRA3.500e-3752.55Non-specific serine/threonine protein kinase n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1007contigP-wetherbeei_contig1007:141..1338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.3752
PFAMsPkinase
Model size444
Max annot lvl4776|Peronosporales
KEGG koko:K08851
Hectar predicted targeting categoryother localisation
Exons5
Evalue8.01e-40
EggNOG OGsCOG3642@1|root,KOG3087@2759|Eukaryota,3QAIG@4776|Peronosporales
EC2.7.11.1
DescriptionLipopolysaccharide kinase (Kdo/WaaP) family
Cds size444
COG categoryT
BRITEko00000,ko01000,ko01001,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185852.9984686-CDS-P-wetherbeei_contig1007:140..2741683185852.9984686-CDS-P-wetherbeei_contig1007:140..274Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1007 141..274 -
1683185853.0117111-CDS-P-wetherbeei_contig1007:507..5851683185853.0117111-CDS-P-wetherbeei_contig1007:507..585Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1007 508..585 -
1683185853.0222964-CDS-P-wetherbeei_contig1007:887..9571683185853.0222964-CDS-P-wetherbeei_contig1007:887..957Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1007 888..957 -
1683185853.033547-CDS-P-wetherbeei_contig1007:1082..11311683185853.033547-CDS-P-wetherbeei_contig1007:1082..1131Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1007 1083..1131 -
1683185853.0447066-CDS-P-wetherbeei_contig1007:1225..13381683185853.0447066-CDS-P-wetherbeei_contig1007:1225..1338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1007 1226..1338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1007.1.1prot_P-wetherbeei_contig1007.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1007 141..1338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1007.1.1

>prot_P-wetherbeei_contig1007.1.1 ID=prot_P-wetherbeei_contig1007.1.1|Name=mRNA_P-wetherbeei_contig1007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MANDRLELLSQGAEARVFATEFCGRPAVVKERFPKKYRRLPALDQKLTKA
RTLQEVRCHVKVRCAGVDTPCIYMVDSDASRIYMERLCGLTVKQWLRENM
KGQPKPERALRIAQAIGAAVALIHDAGVIHGDLTTSNFMLRGAWGGGD
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mRNA from alignment at P-wetherbeei_contig1007:141..1338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1007.1.1 ID=mRNA_P-wetherbeei_contig1007.1.1|Name=mRNA_P-wetherbeei_contig1007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1198bp|location=Sequence derived from alignment at P-wetherbeei_contig1007:141..1338- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAACGATCGGCTCGAGCTGCTGAGCCAGGGGGCGGAAGCTAGGGT CTTCGCAACGGAGTTTTGCGGCAGGCCTGCCGTCGTGAAGGAGCGCTTCC CCAAAAAATATCGGTACGGCCCTCACGTAGATGCAAAGAACGGCTTCGCT GGGCAATACACGGCTCAGGTTGACGCCATCCTGACGTTTTCGCTTTCAAA ATGTGAGCAGGCTGCCAGCGCTGGACCAGAAGTTGACGAAAGCAAGGACT CTCCAGGTTAGATGAGTCCTCGTTTTGCCGGTTGTGTAAGTGCACCTTTG ATGGAAAAAAGGATCCGTTAACACTGCTTGAACGTGCTGTTTACCCACGC TCAGTGATGTGATATTCGTTCCACCTCGTAGGAGGTGCGGTGCCATGTCA AGGTTCGGTGCGCAGGGGTCGACACGCCCTGCATTTACATGGTAGATTCA GGTACGAGAGACTGGCGTCACTGAAGTAGTGTCTACATTTAAAACGAAAC ATGGCATGCTCTGTTTTGTGGAGTTTGTGGTATATCACCGATGTCTACGT AAACAAAGGGTTAGAAGCAGGGCAGCGACGCTTTTCTTAGAGCGGCGCAG GGAAAGACACGACTATCTGGGGGAAGCCAGATAGTGACTCGTTGCAAAAA ATTGCCGAGCAGCTGTAGCAATAGCTTTTGTCGCAAAGCGGGATGCGCGC TCCAGCGTGCTGACACTGAGTATCATCATTTGCGTGCACTCCTTCCTCCG CAGATGCCAGCAGAATATACATGGAGAGACTGTGCGGCCTCACGGTCAAG CAATGGCTTCGCGAAAACATGAAAGGTCAGCGTCGTCCTTGTGGTCTCAG TAGAATCTGGAGTTTTGCAGGAATTGGTCATCAGGCGTACCTCTTCCTTC GCTTTCGCCCCTTCGCTAACGTCCTCGTTTTCGGGACCCGATTGGAAGAA TCTTGGTCGCCTTCGCCTCATAACCTTTGAAAGTGGAAAGCAACCCTAAC CGCCGAGCTAACGTCCCGGCTTCCCCGCTTCGTTGTCTCTGCCCGATCGG TTTGACTGGTGCAGCCAAGCCCGAGCGGGCGCTCCGAATCGCCCAGGCAA TCGGCGCCGCTGTGGCGCTGATACACGACGCCGGAGTCATCCACGGTGAC CTCACCACCTCCAACTTTATGCTGCGCGGCGCGTGGGGCGGTGGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1007:141..1338-

>mRNA_P-wetherbeei_contig1007.1.1 ID=mRNA_P-wetherbeei_contig1007.1.1|Name=mRNA_P-wetherbeei_contig1007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig1007:141..1338- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAACGATCGGCTCGAGCTGCTGAGCCAGGGGGCGGAAGCTAGGGT
CTTCGCAACGGAGTTTTGCGGCAGGCCTGCCGTCGTGAAGGAGCGCTTCC
CCAAAAAATATCGCAGGCTGCCAGCGCTGGACCAGAAGTTGACGAAAGCA
AGGACTCTCCAGGAGGTGCGGTGCCATGTCAAGGTTCGGTGCGCAGGGGT
CGACACGCCCTGCATTTACATGGTAGATTCAGATGCCAGCAGAATATACA
TGGAGAGACTGTGCGGCCTCACGGTCAAGCAATGGCTTCGCGAAAACATG
AAAGGTCAGCCCAAGCCCGAGCGGGCGCTCCGAATCGCCCAGGCAATCGG
CGCCGCTGTGGCGCTGATACACGACGCCGGAGTCATCCACGGTGACCTCA
CCACCTCCAACTTTATGCTGCGCGGCGCGTGGGGCGGTGGCGAT
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