mRNA_P-wetherbeei_contig10069.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10069.2.1
Unique NamemRNA_P-wetherbeei_contig10069.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.330e-11
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   64 RQFEEWAATDGTPKLSTMPQEITLDWCAVKSIVKFPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGNRDKIP 336
            ++F+ + A      +S  P E+ L++ A +    +P++   AR +L VPASS VLERDFS AG ++   RS +    VEM+LFL+GN++ IP
Sbjct:  690 QEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIP 781          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A5A9NFX1_9TELE (Transposable element Hobo transposase n=4 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NFX1_9TELE)

HSP 1 Score: 57.8 bits (138), Expect = 2.310e-7
Identity = 25/53 (47.17%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  166 FPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGN 321
            FP++ ++AR++L +PASS   ERDFS AG +++++RS ++P  V+ +LFLH N
Sbjct:  554 FPNIAQIARSILAIPASSAASERDFSCAGYVIQERRSQLKPSTVDDVLFLHSN 606          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A1A8CF83_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CF83_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 7.310e-7
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   91 DGTPKLSTMP-QEITLDWCAVKSIVKFPDLYEVARTVLVVPASSGVLERDFSFAGMLRKKRSSMRPEMVEMLLFLHGN 321
            D   K S++P  E  L+W  V   VKFP L +++   L +P +S   ER FS AG +  KRS+++P+ V+ L+FLH N
Sbjct:   24 DNYLKASSLPLSEDPLNWWRVHK-VKFPLLAQLSTRYLCIPGTSVSAERVFSTAGDVTAKRSTLKPQHVDQLVFLHKN 100          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A1A8U2A9_NOTFU (Zinc finger, BED-type containing 1 (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8U2A9_NOTFU)

HSP 1 Score: 50.8 bits (120), Expect = 5.430e-6
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  118 PQEITLDWCAVKSIVKFPDLYEVARTVLVVPASSGVLERDFSFAGMLRKK-RSSMRPEMVEMLLFLHGNRD 327
            P+E  L W +  +  +FP L  VAR  + V A+S   ER FS AG +    RSS++P MV ML+FL GN+D
Sbjct:   16 PKETPLTWWS-NNRERFPLLARVARKYVCVSATSAPSERVFSVAGNVATPLRSSLKPYMVNMLVFLVGNKD 85          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 51.6 bits (122), Expect = 6.990e-6
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  166 FPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGN 321
            FP L ++AR +L +PA+S   ER FS AG ++ KKR++++PE V+ML+FL+ N
Sbjct:   79 FPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPENVDMLVFLNKN 131          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A5A9P9S9_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P9S9_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 1.520e-5
Identity = 23/53 (43.40%), Postives = 39/53 (73.58%), Query Frame = 1
Query:  166 FPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGN 321
            FP++ ++AR++L +PASS   ER FS AG +++++RS ++   V+ +LFLH N
Sbjct:  166 FPNIAQIARSILAIPASSAASERGFSCAGYVIQERRSQLKQSTVDDVLFLHSN 218          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A1X6P4V8_PORUM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4V8_PORUM)

HSP 1 Score: 52.4 bits (124), Expect = 1.670e-5
Identity = 38/102 (37.25%), Postives = 52/102 (50.98%), Query Frame = 1
Query:   37 PSLAAAEQLRQFEEWAATDGTPKLSTMPQEITLDWCAVKSIVKFPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGNRDKIPA 339
            PS  A  +L  F + A  +   +    PQ +   W   K   KFP LY VA + L   ASS   ERDF  AG ++RK R+ + P+ +EM  F+H N D +P 
Sbjct:  251 PSATACAELEAFLQLAEINQKQQ----PQHV---WRGYKE--KFPVLYLVACSSLGAVASSAASERDFLTAGAVMRKNRTRLLPQHLEMHCFIHDNVDLLPT 343          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: UPI000B937505 (zinc finger BED domain-containing protein 1-like n=2 Tax=Aphidinae TaxID=133076 RepID=UPI000B937505)

HSP 1 Score: 50.1 bits (118), Expect = 3.440e-5
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   64 RQFEEWAATDGTPKLSTMPQEITLD---WCAVKSIVKFPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGNR 324
            +QFE + A    P+L       TLD   W   +   K+P + ++A+  L +PA+S   ER FS AG ++ +KR+S+ PE V ML+FLH N+
Sbjct:   42 KQFENYIAE---PQL-----RFTLDPKEWWKTR-FSKYPVIGDLAKKYLTIPATSVSSERCFSTAGNIVTRKRASLSPENVNMLVFLHQNK 123          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A6S7ZVB6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZVB6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.560e-5
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  166 FPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGNRDKIP 336
            +P LY  A  +L    SSG LERDF+  G +LR KRSS+ P +VE+L+ LH N + IP
Sbjct:  514 YPHLYVAANAILGGMVSSGDLERDFNPMGDVLRGKRSSLDPALVEILMHLHLNFNMIP 571          
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Match: A0A1A8JIY1_NOTKU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8JIY1_NOTKU)

HSP 1 Score: 49.3 bits (116), Expect = 6.140e-5
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   91 DGTPKLSTMP-QEITLDWCAVKSIVKFPDLYEVARTVLVVPASSGVLERDFSFAG-MLRKKRSSMRPEMVEMLLFLHGN 321
            D   K  ++P  E  L+W  V  +  FP L  ++   L +P +SG  ER FS AG ++  KRS+++P+ V+ L+FLH N
Sbjct:   60 DNYLKTPSLPLSEDPLNWWRVHKVA-FPLLARLSERYLCIPGTSGSAERVFSTAGDVVTAKRSTLKPQHVDQLVFLHKN 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10069.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE7.330e-1140.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A5A9NFX1_9TELE2.310e-747.17Transposable element Hobo transposase n=4 Tax=Trip... [more]
A0A1A8CF83_9TELE7.310e-741.03Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A8U2A9_NOTFU5.430e-645.07Zinc finger, BED-type containing 1 (Fragment) n=1 ... [more]
A0A1X7SR93_AMPQE6.990e-649.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A5A9P9S9_9TELE1.520e-543.40Dimer_Tnp_hAT domain-containing protein n=1 Tax=Tr... [more]
A0A1X6P4V8_PORUM1.670e-537.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Po... [more]
UPI000B9375053.440e-538.46zinc finger BED domain-containing protein 1-like n... [more]
A0A6S7ZVB6_9STRA4.560e-550.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A1A8JIY1_NOTKU6.140e-537.97Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10069contigP-wetherbeei_contig10069:1807..2148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog176946.XP_007423149.1
PFAMsDimer_Tnp_hAT,zf-BED
Model size342
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.84e-07
EggNOG OGsKOG1121@1|root,KOG2461@1|root,KOG1121@2759|Eukaryota,KOG2461@2759|Eukaryota,39UGB@33154|Opisthokonta,3BN4J@33208|Metazoa,3E6DU@33213|Bilateria,4877C@7711|Chordata,49996@7742|Vertebrata
DescriptionBED zinc finger
Cds size342
COG categoryKL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185852.9190419-CDS-P-wetherbeei_contig10069:1806..21481683185852.9190419-CDS-P-wetherbeei_contig10069:1806..2148Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10069 1807..2148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10069.2.1prot_P-wetherbeei_contig10069.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10069 1807..2148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10069.2.1

>prot_P-wetherbeei_contig10069.2.1 ID=prot_P-wetherbeei_contig10069.2.1|Name=mRNA_P-wetherbeei_contig10069.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MPLPPPAFLPAPPSLAAAEQLRQFEEWAATDGTPKLSTMPQEITLDWCAV
KSIVKFPDLYEVARTVLVVPASSGVLERDFSFAGMLRKKRSSMRPEMVEM
LLFLHGNRDKIPAY
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mRNA from alignment at P-wetherbeei_contig10069:1807..2148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10069.2.1 ID=mRNA_P-wetherbeei_contig10069.2.1|Name=mRNA_P-wetherbeei_contig10069.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig10069:1807..2148+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGCCGCCCCCTGCGTTTCTCCCCGCCCCGCCGTCTCTCGCGGC GGCGGAGCAGCTGAGGCAGTTTGAGGAGTGGGCGGCGACGGACGGGACGC CAAAGCTTTCAACGATGCCGCAGGAGATTACGCTGGACTGGTGTGCTGTT AAGAGTATCGTCAAGTTTCCCGACCTTTATGAGGTGGCGCGCACCGTGCT GGTGGTGCCAGCGTCTTCCGGCGTGCTTGAGCGAGACTTCTCTTTTGCCG GCATGTTGCGCAAGAAACGCAGCAGCATGCGGCCTGAGATGGTCGAGATG CTCCTCTTCCTGCACGGCAACAGGGACAAGATTCCAGCGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10069:1807..2148+

>mRNA_P-wetherbeei_contig10069.2.1 ID=mRNA_P-wetherbeei_contig10069.2.1|Name=mRNA_P-wetherbeei_contig10069.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig10069:1807..2148+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGCCGCCCCCTGCGTTTCTCCCCGCCCCGCCGTCTCTCGCGGC
GGCGGAGCAGCTGAGGCAGTTTGAGGAGTGGGCGGCGACGGACGGGACGC
CAAAGCTTTCAACGATGCCGCAGGAGATTACGCTGGACTGGTGTGCTGTT
AAGAGTATCGTCAAGTTTCCCGACCTTTATGAGGTGGCGCGCACCGTGCT
GGTGGTGCCAGCGTCTTCCGGCGTGCTTGAGCGAGACTTCTCTTTTGCCG
GCATGTTGCGCAAGAAACGCAGCAGCATGCGGCCTGAGATGGTCGAGATG
CTCCTCTTCCTGCACGGCAACAGGGACAAGATTCCAGCGTAC
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