mRNA_P-wetherbeei_contig10057.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10057.2.1
Unique NamemRNA_P-wetherbeei_contig10057.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10057.2.1 vs. uniprot
Match: Q9J3U5_ESV1K (EsV-1-56 n=2 Tax=root TaxID=1 RepID=Q9J3U5_ESV1K)

HSP 1 Score: 71.2 bits (173), Expect = 7.160e-12
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 1 
Query:    1 SGATSRPVLQF-NGSDELKLTNQAA-----SGDVVIYSNNGSAGGETERLRLNGGTGDQDILFTNGNLGISLAGAAVATLDVNGDANIAQGVTIGGDLDMSSQDIVSVHDLVN-NSLAEGAKITLTTHATAPQFDF 387
            +G  +   + F N S+ L L    A     S  +V  + +G      +RL+  GG GDQ   F+N N+GI  A +     +V+G + +    T+ G++D+S  D+++V D+ + N+LAE A I LT+ AT PQ DF
Sbjct:  235 TGLANLSTVSFDNASNSLALRTSLADQGGVSDSMVFQTTSGVNNTYLDRLKFEGGVGDQSATFSNVNVGIGAAPSGTHRFEVSGTSLLTGDATVVGNVDVSGNDLLNVSDITSSNALAEQATIALTSSATDPQIDF 370
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BLAST of mRNA_P-wetherbeei_contig10057.2.1 vs. uniprot
Match: A0A516MHX1_9VIRU (Putative tail fiber protein n=1 Tax=Prokaryotic dsDNA virus sp. TaxID=2591644 RepID=A0A516MHX1_9VIRU)

HSP 1 Score: 62.8 bits (151), Expect = 7.190e-9
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 SGATSRPVLQFNGSDELKLTNQAASGDVVIYSNNGSAGGETERLRLNGGTGDQDILFTNGNLGI 192
            S A  R  L  N  D   LTN+  SGD+++ SNNGSAGGETERLR   G+G Q+  F+N N+GI
Sbjct: 1234 SDANYRKALYANNEDHY-LTNRHTSGDLILMSNNGSAGGETERLRFVAGSGTQNAYFSNVNVGI 1296
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10057.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q9J3U5_ESV1K7.160e-1233.82EsV-1-56 n=2 Tax=root TaxID=1 RepID=Q9J3U5_ESV1K[more]
A0A516MHX1_9VIRU7.190e-953.13Putative tail fiber protein n=1 Tax=Prokaryotic ds... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10057contigP-wetherbeei_contig10057:748..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185852.1740022-CDS-P-wetherbeei_contig10057:747..11341683185852.1740022-CDS-P-wetherbeei_contig10057:747..1134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10057 748..1134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10057.2.1prot_P-wetherbeei_contig10057.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10057 748..1134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10057.2.1

>prot_P-wetherbeei_contig10057.2.1 ID=prot_P-wetherbeei_contig10057.2.1|Name=mRNA_P-wetherbeei_contig10057.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
SGATSRPVLQFNGSDELKLTNQAASGDVVIYSNNGSAGGETERLRLNGGT
GDQDILFTNGNLGISLAGAAVATLDVNGDANIAQGVTIGGDLDMSSQDIV
SVHDLVNNSLAEGAKITLTTHATAPQFDF
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mRNA from alignment at P-wetherbeei_contig10057:748..1134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10057.2.1 ID=mRNA_P-wetherbeei_contig10057.2.1|Name=mRNA_P-wetherbeei_contig10057.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig10057:748..1134+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGGTGCCACGTCGCGCCCCGTCCTGCAGTTCAACGGATCAGACGAGCT
CAAGCTGACCAATCAGGCCGCGTCGGGTGACGTTGTCATTTACTCCAACA
ACGGCTCCGCGGGAGGAGAGACGGAGCGCCTGCGCCTCAACGGCGGCACT
GGTGATCAGGATATTCTGTTTACCAACGGCAACCTCGGTATCTCGCTCGC
GGGGGCCGCCGTCGCCACCCTGGATGTCAACGGTGATGCCAACATTGCCC
AGGGCGTCACCATTGGCGGGGACCTTGACATGAGCTCGCAGGACATTGTC
TCGGTCCATGACCTCGTCAACAATTCTCTTGCCGAGGGCGCAAAGATCAC
GCTGACCACGCACGCTACCGCACCCCAGTTTGACTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10057:748..1134+

>mRNA_P-wetherbeei_contig10057.2.1 ID=mRNA_P-wetherbeei_contig10057.2.1|Name=mRNA_P-wetherbeei_contig10057.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig10057:748..1134+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGGTGCCACGTCGCGCCCCGTCCTGCAGTTCAACGGATCAGACGAGCT
CAAGCTGACCAATCAGGCCGCGTCGGGTGACGTTGTCATTTACTCCAACA
ACGGCTCCGCGGGAGGAGAGACGGAGCGCCTGCGCCTCAACGGCGGCACT
GGTGATCAGGATATTCTGTTTACCAACGGCAACCTCGGTATCTCGCTCGC
GGGGGCCGCCGTCGCCACCCTGGATGTCAACGGTGATGCCAACATTGCCC
AGGGCGTCACCATTGGCGGGGACCTTGACATGAGCTCGCAGGACATTGTC
TCGGTCCATGACCTCGTCAACAATTCTCTTGCCGAGGGCGCAAAGATCAC
GCTGACCACGCACGCTACCGCACCCCAGTTTGACTTC
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