mRNA_P-wetherbeei_contig10057.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10057.1.1
Unique NamemRNA_P-wetherbeei_contig10057.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10057.1.1 vs. uniprot
Match: Q9J3U5_ESV1K (EsV-1-56 n=2 Tax=root TaxID=1 RepID=Q9J3U5_ESV1K)

HSP 1 Score: 207 bits (528), Expect = 2.110e-60
Identity = 115/233 (49.36%), Postives = 160/233 (68.67%), Query Frame = 1 
Query:    7 TSVDVVGTFTIDGVDIADTLLSSNAFTIDGNHVDLKADYELLNINTLNAYTANVVLDVNGSTAIRGNRLYMYDQTGTANKKILEFDDDANVVELSASRA-----TDSLKLQT---FGTDFVDRLSFAPGDGVQAATFSNVNLGVGAAPSGTYKFEVTGTSYMSGQLSVNADIDVLNNDLRNVATVSSTDTLAEQAKISLVSHATAPQIDMIVGNLSAAPTTALTLTEALTTLN 681
            TS DV G   ++G DI  T+ + NA+ IDG  V LK++Y L+N+N LNA+T +V LDVNGS   RGN  +MYD TG AN   + FD+ +N + L  S A     +DS+  QT       ++DRL F  G G Q+ATFSNVN+G+GAAPSGT++FEV+GTS ++G  +V  ++DV  NDL NV+ ++S++ LAEQA I+L S AT PQID ++G+L+  PTTA+T+TE+  T+N
Sbjct:  161 TSADVTGVLNVNGTDILQTITNGNAWEIDGTTVQLKSEYPLVNVNALNAHTTSVALDVNGSIVNRGNDFFMYDSTGLANLSTVSFDNASNSLALRTSLADQGGVSDSMVFQTTSGVNNTYLDRLKFEGGVGDQSATFSNVNVGIGAAPSGTHRFEVSGTSLLTGDATVVGNVDVSGNDLLNVSDITSSNALAEQATIALTSSATDPQIDFVLGDLAGTPTTAMTITESAATVN 393
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10057.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q9J3U5_ESV1K2.110e-6049.36EsV-1-56 n=2 Tax=root TaxID=1 RepID=Q9J3U5_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10057contigP-wetherbeei_contig10057:1..705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size705
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-56
Ec32 orthologEc-06_006230.1
Cds size705
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185852.1447964-CDS-P-wetherbeei_contig10057:0..7051683185852.1447964-CDS-P-wetherbeei_contig10057:0..705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10057 1..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10057.1.1prot_P-wetherbeei_contig10057.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10057 1..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10057.1.1

>prot_P-wetherbeei_contig10057.1.1 ID=prot_P-wetherbeei_contig10057.1.1|Name=mRNA_P-wetherbeei_contig10057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
TPTSVDVVGTFTIDGVDIADTLLSSNAFTIDGNHVDLKADYELLNINTLN
AYTANVVLDVNGSTAIRGNRLYMYDQTGTANKKILEFDDDANVVELSASR
ATDSLKLQTFGTDFVDRLSFAPGDGVQAATFSNVNLGVGAAPSGTYKFEV
TGTSYMSGQLSVNADIDVLNNDLRNVATVSSTDTLAEQAKISLVSHATAP
QIDMIVGNLSAAPTTALTLTEALTTLNTDLTMTSS
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mRNA from alignment at P-wetherbeei_contig10057:1..705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10057.1.1 ID=mRNA_P-wetherbeei_contig10057.1.1|Name=mRNA_P-wetherbeei_contig10057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig10057:1..705+ (Phaeothamnion wetherbeei SAG_119_79)
ACCCCAACCAGTGTGGATGTCGTGGGTACCTTTACCATTGATGGCGTGGA
CATTGCCGACACACTCCTCTCCTCCAACGCCTTTACGATTGATGGCAACC
ACGTGGACCTCAAGGCAGACTACGAGCTCCTCAACATCAATACGCTCAAT
GCGTACACTGCCAACGTTGTTCTTGATGTCAACGGGTCCACGGCGATCCG
CGGCAACAGGCTCTACATGTACGACCAGACCGGAACCGCCAACAAGAAGA
TCCTGGAGTTTGATGACGACGCAAACGTCGTGGAGCTCAGCGCCTCGCGC
GCCACGGACTCTCTCAAGCTGCAGACTTTTGGCACCGATTTTGTGGACCG
CTTGTCGTTTGCCCCCGGCGATGGCGTCCAGGCGGCCACGTTCTCCAACG
TCAACCTTGGCGTGGGTGCCGCTCCCTCGGGCACGTACAAGTTTGAGGTG
ACGGGCACGTCCTACATGAGCGGCCAGCTCTCGGTGAATGCCGACATTGA
TGTCCTCAACAACGATCTGCGCAATGTCGCTACCGTCAGCTCCACCGACA
CCCTCGCGGAGCAGGCCAAGATCTCCCTCGTGAGTCACGCCACCGCGCCC
CAGATTGACATGATCGTGGGCAACCTGTCCGCGGCCCCCACCACGGCCCT
CACGCTCACCGAGGCTCTGACCACCCTGAACACGGACCTCACCATGACGA
GCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10057:1..705+

>mRNA_P-wetherbeei_contig10057.1.1 ID=mRNA_P-wetherbeei_contig10057.1.1|Name=mRNA_P-wetherbeei_contig10057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig10057:1..705+ (Phaeothamnion wetherbeei SAG_119_79)
ACCCCAACCAGTGTGGATGTCGTGGGTACCTTTACCATTGATGGCGTGGA
CATTGCCGACACACTCCTCTCCTCCAACGCCTTTACGATTGATGGCAACC
ACGTGGACCTCAAGGCAGACTACGAGCTCCTCAACATCAATACGCTCAAT
GCGTACACTGCCAACGTTGTTCTTGATGTCAACGGGTCCACGGCGATCCG
CGGCAACAGGCTCTACATGTACGACCAGACCGGAACCGCCAACAAGAAGA
TCCTGGAGTTTGATGACGACGCAAACGTCGTGGAGCTCAGCGCCTCGCGC
GCCACGGACTCTCTCAAGCTGCAGACTTTTGGCACCGATTTTGTGGACCG
CTTGTCGTTTGCCCCCGGCGATGGCGTCCAGGCGGCCACGTTCTCCAACG
TCAACCTTGGCGTGGGTGCCGCTCCCTCGGGCACGTACAAGTTTGAGGTG
ACGGGCACGTCCTACATGAGCGGCCAGCTCTCGGTGAATGCCGACATTGA
TGTCCTCAACAACGATCTGCGCAATGTCGCTACCGTCAGCTCCACCGACA
CCCTCGCGGAGCAGGCCAAGATCTCCCTCGTGAGTCACGCCACCGCGCCC
CAGATTGACATGATCGTGGGCAACCTGTCCGCGGCCCCCACCACGGCCCT
CACGCTCACCGAGGCTCTGACCACCCTGAACACGGACCTCACCATGACGA
GCTCC
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