mRNA_P-wetherbeei_contig10010.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10010.1.1
Unique NamemRNA_P-wetherbeei_contig10010.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10010contigP-wetherbeei_contig10010:2..2427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2426
Hectar predicted targeting categoryother localisation
Exons1
Cds size1278
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.0675533-UTR-P-wetherbeei_contig10010:1..1111683185850.0675533-UTR-P-wetherbeei_contig10010:1..111Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10010 2..111 +
1683185850.0925748-UTR-P-wetherbeei_contig10010:1389..24271683185850.0925748-UTR-P-wetherbeei_contig10010:1389..2427Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10010 1390..2427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.0803866-CDS-P-wetherbeei_contig10010:111..13891683185850.0803866-CDS-P-wetherbeei_contig10010:111..1389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10010 112..1389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10010.1.1prot_P-wetherbeei_contig10010.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10010 112..1389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10010.1.1

>prot_P-wetherbeei_contig10010.1.1 ID=prot_P-wetherbeei_contig10010.1.1|Name=mRNA_P-wetherbeei_contig10010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=426bp
MQRHRHPWHRRWRRRWRWRRLHHLQRRTRRHLRRRWHRRSPVLPHQPEAL
PVPPAALLQNRGRRRQVAAPMALQVASLAHVATVPTQVTAAEAGGGGGGG
GGSGGTAAVWLHYYQVRHNHHCMMTAASPGAWAAPAVTPMPAAWENPVAA
RHSPVAAPQVREDAPTVPPAPAASSAAAVDAADASSRAPFAQACNGSTNG
MVSHVAPAAKPQAPDVAAPVPAAAATAALGHAPDVQPLGAGSGGADIAEP
PVAASPTSRAGEVAAAAADTTAAADNAAAVDAAIKDDDVEEGDEEKEEAA
AVAPAHETAAAVGDEAGAGADADNYAVVGAMAAVACAEAARARAVALLAA
LEAAAADIRRENATLRRENSDLCRGGGSGGRGWKQGKRVSAMPALNGGGE
GCSGSSCSGGRSPLFGLKTNFRTLW*
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mRNA from alignment at P-wetherbeei_contig10010:2..2427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10010.1.1 ID=mRNA_P-wetherbeei_contig10010.1.1|Name=mRNA_P-wetherbeei_contig10010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2426bp|location=Sequence derived from alignment at P-wetherbeei_contig10010:2..2427+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGGAGAAAGGTGAGGTTGCGGCAAGTACAAGTCCTTCGCACCTGCAG
TAAGTTGGTGTGAGAAAGCTTGAAAGGAGTGCGTCTCGCGTTGTCCTTTT
CGCCGATGAAATGCAGCGGCACCGGCATCCATGGCACCGGCGGTGGCGGC
GCAGGTGGCGATGGCGGCGGCTGCACCATTTACAGCGCCGTACGCGGCGC
CACCTGCGGCGCCGGTGGCACCGCCGGAGCCCAGTGCTGCCACACCAACC
AGAGGCGTTACCAGTGCCGCCGGCAGCGTTGCTGCAGAATCGTGGTCGGC
GCCGCCAGGTGGCGGCGCCGATGGCGCTGCAGGTAGCATCGCTGGCGCAC
GTTGCGACCGTGCCGACACAGGTCACCGCCGCTGAAGCTGGCGGTGGCGG
TGGTGGCGGCGGCGGCAGCGGCGGTACAGCTGCGGTGTGGCTGCATTACT
ATCAGGTGCGACACAACCACCACTGTATGATGACTGCGGCATCGCCTGGA
GCATGGGCAGCCCCGGCCGTGACACCAATGCCAGCGGCGTGGGAGAACCC
CGTGGCGGCGCGACATAGCCCCGTGGCGGCTCCCCAGGTGAGGGAGGATG
CTCCTACGGTTCCGCCGGCTCCCGCTGCTTCCAGTGCGGCGGCTGTCGAT
GCTGCCGACGCCAGCAGCCGCGCCCCATTTGCCCAGGCCTGTAACGGCTC
GACCAACGGCATGGTCAGTCACGTGGCGCCGGCAGCCAAACCGCAGGCGC
CGGATGTTGCTGCTCCAGTGCCTGCAGCGGCCGCGACCGCTGCTCTCGGT
CATGCTCCAGATGTGCAGCCTCTCGGTGCGGGCAGCGGCGGTGCTGACAT
AGCGGAGCCACCAGTGGCGGCGTCGCCAACCTCGCGGGCCGGCGAAGTCG
CCGCTGCCGCGGCGGACACCACGGCGGCTGCGGACAACGCTGCGGCGGTA
GACGCCGCGATAAAGGATGACGATGTAGAAGAGGGAGACGAAGAAAAGGA
GGAGGCGGCGGCGGTGGCGCCGGCCCACGAGACGGCAGCGGCGGTGGGAG
ATGAGGCGGGAGCCGGTGCGGACGCGGACAACTACGCTGTGGTCGGGGCT
ATGGCAGCCGTGGCGTGCGCTGAGGCAGCGCGTGCGCGGGCGGTGGCGCT
CCTGGCGGCCTTGGAGGCCGCTGCCGCCGACATCCGGCGCGAAAATGCGA
CGCTGCGCCGCGAGAACAGCGACCTTTGCCGTGGTGGCGGCAGCGGTGGC
CGCGGCTGGAAGCAGGGAAAGAGAGTCAGCGCGATGCCAGCATTGAATGG
CGGCGGTGAAGGCTGCAGCGGCAGCAGCTGCAGCGGCGGCAGGTCGCCCT
TATTTGGTCTCAAAACTAACTTTAGAACGCTGTGGTGATACTGCCCCTTA
AAGGGCATCTCGGCAACATTGTCTTCCAGGGGGCGCGTAACGGGCGACGC
AGCACCGCGCGAAAGCAGCGGCGACCCCAATCGCAGTAACGGTCAAGGAA
ACCGCTACGGCGGCGGCAGTGACGTCGTTGGTGGTGGGGGCACTGGCGAC
GCTGGTGGCGGCGACGATGGCAACGGGGCCAGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCTGTGACTACGGTGACGACGACTACGCCAGCAGAGGCC
GGCCGCCGGACCGCGGCAGGCGAGGCGGCTCGTTGCGGAGCCGGAACTGG
AGCTGCGAAGATGGTCGCAGGCACGACCGCGACAGTCACGGTCGCCACTG
CCGCCGCCATCGCCGCCACCGCGGCAGCCGCTATGACAGCCATGGCCGTG
GCCTCCGTCGCAGCTACAGCAGCAGCCGCAGCAGCAGTCGTGGCCTCGGC
TGCGGTCGCAGCCAGAGCCGGAGCCAGAGCTGGAACGACCACGGCGAGGG
AGATACCCGGGGCCGCGAGCGCCCGCGGAGCCGCCACCACCACCACGGTT
GCGGCAACTGCAGCTGTAACCGGCTGCCACCGCAGCAGAAGTCGCAGCCA
TGTCCGCCATCGTAGTGACAGAGGCGATTTTGACGACACGGCACGCCGAG
AGTTCCGCGTCGCCCACCGGTGCTCTGGCGGAGAAGCGCCGCGGCAGCGG
CAGCGGTGACAGTACCGGTGGCGGCGGCGGCGGTTGGAAGGCGGGGACGG
CAGCGATGCGGGGGGCGTCAGTAACAGCTATAGCCACCGCGCGACGCCGA
TGGAGGAGGATAACGGCGGCGGCAACGATTCTGGCATCAGTGCCGGCAGC
AGGGCTGGCGACAGGAATGCCACCGGAGATAGCAGCGCATTCTCCTCTTG
AGTACGAGGGGAACCTGCAGCCGCTTAGCGGAACGCAGGAAGCACGAGAG
CGCTGATTGCCACACAAAGAAGTGCGGAAGACGTTAGATGTGTTTAGGCA
GTTAGTTCCTACGTGCCGAGTTCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10010:2..2427+

>mRNA_P-wetherbeei_contig10010.1.1 ID=mRNA_P-wetherbeei_contig10010.1.1|Name=mRNA_P-wetherbeei_contig10010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1278bp|location=Sequence derived from alignment at P-wetherbeei_contig10010:2..2427+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGGCACCGGCATCCATGGCACCGGCGGTGGCGGCGCAGGTGGCG
ATGGCGGCGGCTGCACCATTTACAGCGCCGTACGCGGCGCCACCTGCGGC
GCCGGTGGCACCGCCGGAGCCCAGTGCTGCCACACCAACCAGAGGCGTTA
CCAGTGCCGCCGGCAGCGTTGCTGCAGAATCGTGGTCGGCGCCGCCAGGT
GGCGGCGCCGATGGCGCTGCAGGTAGCATCGCTGGCGCACGTTGCGACCG
TGCCGACACAGGTCACCGCCGCTGAAGCTGGCGGTGGCGGTGGTGGCGGC
GGCGGCAGCGGCGGTACAGCTGCGGTGTGGCTGCATTACTATCAGGTGCG
ACACAACCACCACTGTATGATGACTGCGGCATCGCCTGGAGCATGGGCAG
CCCCGGCCGTGACACCAATGCCAGCGGCGTGGGAGAACCCCGTGGCGGCG
CGACATAGCCCCGTGGCGGCTCCCCAGGTGAGGGAGGATGCTCCTACGGT
TCCGCCGGCTCCCGCTGCTTCCAGTGCGGCGGCTGTCGATGCTGCCGACG
CCAGCAGCCGCGCCCCATTTGCCCAGGCCTGTAACGGCTCGACCAACGGC
ATGGTCAGTCACGTGGCGCCGGCAGCCAAACCGCAGGCGCCGGATGTTGC
TGCTCCAGTGCCTGCAGCGGCCGCGACCGCTGCTCTCGGTCATGCTCCAG
ATGTGCAGCCTCTCGGTGCGGGCAGCGGCGGTGCTGACATAGCGGAGCCA
CCAGTGGCGGCGTCGCCAACCTCGCGGGCCGGCGAAGTCGCCGCTGCCGC
GGCGGACACCACGGCGGCTGCGGACAACGCTGCGGCGGTAGACGCCGCGA
TAAAGGATGACGATGTAGAAGAGGGAGACGAAGAAAAGGAGGAGGCGGCG
GCGGTGGCGCCGGCCCACGAGACGGCAGCGGCGGTGGGAGATGAGGCGGG
AGCCGGTGCGGACGCGGACAACTACGCTGTGGTCGGGGCTATGGCAGCCG
TGGCGTGCGCTGAGGCAGCGCGTGCGCGGGCGGTGGCGCTCCTGGCGGCC
TTGGAGGCCGCTGCCGCCGACATCCGGCGCGAAAATGCGACGCTGCGCCG
CGAGAACAGCGACCTTTGCCGTGGTGGCGGCAGCGGTGGCCGCGGCTGGA
AGCAGGGAAAGAGAGTCAGCGCGATGCCAGCATTGAATGGCGGCGGTGAA
GGCTGCAGCGGCAGCAGCTGCAGCGGCGGCAGGTCGCCCTTATTTGGTCT
CAAAACTAACTTTAGAACGCTGTGGTGA
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