mRNA_P-wetherbeei_contig100.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig100.4.1
Unique Name	mRNA_P-wetherbeei_contig100.4.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

[Close]

BLAST of mRNA_P-wetherbeei_contig100.4.1 vs. uniprot
Match: A0A835Z8D2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.970e-24
Identity = 82/171 (47.95%), Postives = 98/171 (57.31%), Query Frame = 1

Query: 1090 LADLLLESFWQEMVR-GGYHAPEALRAAAGPPLRAYFLAGVERAGG--------------IALLAPAAFCPRRSLSLYLQGPAGAGKTAFARGMGAALAAAIQRWCDAGAPATAALVVQA-LNKPLGRLAAELAPRPNNNDTSTMGLAMSRRQTLAQAKPGLVCISFEEVP 1554
            +AD ++E+FW+ M R  GY A  +LR+A    LRAY  +G + + G                 LAPAAF P R LSLYL G AG GK+AF R   A LA A+    D        L VQ  LN+P G L  +L PRPNNND STM +   RRQTLAQ KPGLVC+S EEVP
Sbjct:  144 VADAVVEAFWRAMWREAGYMAAASLRSAVTDALRAYVASGFDGSSGGXXXXXXXXXXXXAPLTLAPAAFRPTRLLSLYLWGEAGCGKSAFVRAFPACLARALAAHVDPE------LEVQFNLNQPYGDLDQQLTPRPNNNDLSTMSIVQGRRQTLAQLKPGLVCLSLEEVP 308

[Close]

BLAST of mRNA_P-wetherbeei_contig100.4.1 vs. uniprot
Match: B7FVF6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVF6_PHATC)

HSP 1 Score: 108 bits (271), Expect = 1.570e-20
Identity = 62/167 (37.13%), Postives = 90/167 (53.89%), Query Frame = 1

Query: 1051 PGLLAVLEGGPPRLADLLLESFWQEMVRGGYHAPEALRAAAGPPLRAYFLAGVERAGGIALLAPAAFCPRRSLSLYLQGPAGAGKTAFARGMGAALAAAIQRWCDAGAPATAALVVQALNKPLGRLAAELAPRPNNNDTSTMGLAMSRRQTLAQAKPGLVCISFEEV 1551
            P L   L  G   +++L++++FW +++R GY     ++    P L  YFL+GV R   + +   A F P   L  YL G AG GK++ A     AL A ++++ D         V Q LNKP+  L  EL  RPNNND S M +   RR T+ Q+KPGLV ++ EE+
Sbjct:  304 PSLYTALTRGAEAVSELMVDTFWTQLLRQGYFCATEIQTLLAPSLNHYFLSGVTRDSTVPIQLNAHFTPTFPLCFYLHGKAGVGKSSLAHAFAPALNATVEQYADP--EIVVRFVKQNLNKPMDTLRLELELRPNNNDLSVMSIIRGRRMTMRQSKPGLVVVNLEEM 468

[Close]

BLAST of mRNA_P-wetherbeei_contig100.4.1 vs. uniprot
Match: B8C416_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C416_THAPS)

HSP 1 Score: 99.8 bits (247), Expect = 1.280e-17
Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = 1

Query: 1078 GPPRLADLLLESFWQEMVRGGYHAPEALRAAAGPPLRAYFLAGVE--RAGGIALLAPAAFCPRRSLSLYLQGPAGAGKTAFARGMGAALAAAIQRWCDAGAPATAALVVQALNKPLGRLAAELAPRPNNNDTSTMGLAMSRRQTLAQAKPGLVCISFEEVP 1554
            G   + D ++ + W+ ++R GY+  E  +   G  LR ++ +G+   R G + LL    F P  SLSLYL G AGAGK++  R +  A+ AAI + CD         V Q LNKP   L  E+  R NNND S M +   RR TLAQ+KPGLV ++ EE+P
Sbjct:  388 GVKTIVDNMICTTWECLLRDGYYVDERRKELLGLELRKFYESGLMAGRDGSMPLLLNGHFQPTYSLSLYLHGTAGAGKSSLVRNIVPAINAAIAKHCDP--ELLVRFVKQNLNKPFKTLQLEMDLRANNNDLSVMSIIQGRRMTLAQSKPGLVFVALEEMP 546

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig100.4.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig100.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z8D2_9STRA	3.970e-24	47.95	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
B7FVF6_PHATC	1.570e-20	37.13	Predicted protein n=1 Tax=Phaeodactylum tricornutu...	[more]
B8C416_THAPS	1.280e-17	40.37	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig100	contig	P-wetherbeei_contig100:11635..14446 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2850.Phatr34225
Model size	2814
Max annot lvl	2836\|Bacillariophyta
Hectar predicted targeting category	other localisation
Exons	1
Evalue	2.57e-21
EggNOG OGs	2C4T7@1\|root,2SDF6@2759\|Eukaryota,2XFQI@2836\|Bacillariophyta
Cds size	2811

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185849.0664554-CDS-P-wetherbeei_contig100:11634..14445	1683185849.0664554-CDS-P-wetherbeei_contig100:11634..14445	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig100 11635..14445 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig100.4.1	prot_P-wetherbeei_contig100.4.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig100 11635..14445 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig100:11635..14446+
coding sequence from alignment at P-wetherbeei_contig100:11635..14446+

protein sequence of mRNA_P-wetherbeei_contig100.4.1

>prot_P-wetherbeei_contig100.4.1 ID=prot_P-wetherbeei_contig100.4.1|Name=mRNA_P-wetherbeei_contig100.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=937bp
STQYSTVYCTVQYPAAAMERATKRRCSQGSLDMTPAEPPAQFFSLLFSSS
SAFEARCGGAEAQDILLQCLRGSGLRASAISSPNLAVSVHVGSAPIPLPP
GAGPEVILVRSMLGTHPQQDELEGEFQAWRPSHVLNLFSQAIARLDAMRG
RSASSSAAAAAAAAAVTAPATPAALATDTVSGLALADALETRAEALISEA
VAAHGSGLRLGLEKELSRIVAATSTFAAASLRYFLEQTRLPLHEIVLRPA
AALATTTMTTTVAAAAAGPKSTSNRPAARMTLVLQGDCSAVKVRAGTVPS
AAAAASEMAATAESDAAGVSSAAAAATAAAAAAASEAAAAANSAAAVCMT
PGLLAVLEGGPPRLADLLLESFWQEMVRGGYHAPEALRAAAGPPLRAYFL
AGVERAGGIALLAPAAFCPRRSLSLYLQGPAGAGKTAFARGMGAALAAAI
QRWCDAGAPATAALVVQALNKPLGRLAAELAPRPNNNDTSTMGLAMSRRQ
TLAQAKPGLVCISFEEVPPTAAAAPAEASACVCGRSGVGGRYGGGGGGGS
DYNGKAHHPSSNHFKANLDGCRASRGRGRCGASSYCHSASGCGGDSSGTS
SGGNGTGVANDAESDSDQRVEQAAALELVARRFQHLSGDASLIAVFTSNY
DLCPASAVALRRVGMFQHLVVMPASPLAGAERRAFALAYADAALQRALPR
ALAAAAAAAMAAETAAVIATAAATTARTAEAVLAATARAVARERGRIAAA
VVAEEAKRTPTAASAASAAAVESDAAAGAAPAAAAIQVPALRGKVLQAEV
PLVAGEGDVRLLVAQLRWAVAWAAAEAVRAHRQNAVAFADFGVRICCDGD
ISGDDMTIETRDKTRIVEVWMEPAATAAAAASSSSAIAGNGATSSPATGA
GKVAGAAVLNDHRKIAPAYVRLLAPASSVCGNGSFWG

mRNA from alignment at P-wetherbeei_contig100:11635..14446+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig100.4.1 ID=mRNA_P-wetherbeei_contig100.4.1|Name=mRNA_P-wetherbeei_contig100.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2812bp|location=Sequence derived from alignment at P-wetherbeei_contig100:11635..14446+ (Phaeothamnion wetherbeei SAG_119_79)
AGTACACAGTACAGTACAGTATACTGTACTGTACAGTATCCCGCCGCCGC
AATGGAACGCGCTACAAAACGTCGGTGCAGCCAAGGTAGCCTCGATATGA
CCCCCGCGGAACCGCCTGCCCAGTTCTTTTCGCTCCTCTTTTCTTCGTCG
TCGGCGTTTGAGGCGAGATGCGGCGGCGCGGAGGCCCAAGATATCTTGCT
GCAATGCCTTCGCGGCTCTGGCCTGCGCGCAAGCGCCATCAGTAGTCCCA
ATTTGGCCGTCAGCGTGCACGTGGGCAGCGCCCCGATCCCCTTGCCTCCG
GGTGCTGGTCCGGAAGTCATTCTCGTCCGCAGCATGCTTGGGACGCACCC
TCAGCAAGACGAACTCGAAGGCGAGTTTCAAGCATGGCGTCCATCGCACG
TCCTGAACTTGTTTTCGCAGGCCATCGCTCGCCTCGACGCCATGCGTGGG
AGGTCGGCGTCATCAAGCGCAGCAGCAGCAGCAGCGGCGGCGGCGGTAAC
AGCGCCAGCAACGCCTGCGGCGCTGGCGACAGACACAGTGTCAGGACTGG
CCTTAGCAGACGCACTGGAGACGCGAGCAGAGGCGCTAATTTCTGAAGCG
GTCGCGGCGCATGGGTCAGGCTTGCGGCTGGGTCTCGAGAAGGAGCTTTC
ACGCATTGTCGCCGCCACGTCGACGTTCGCCGCGGCATCACTTCGCTACT
TTTTGGAGCAAACGAGGCTGCCGCTGCACGAGATTGTGCTGCGCCCCGCC
GCCGCTTTGGCAACGACGACGATGACGACAACGGTGGCGGCTGCCGCTGC
GGGTCCCAAAAGCACCAGCAACCGCCCCGCCGCCCGCATGACCCTTGTGC
TGCAAGGCGACTGTTCCGCCGTCAAGGTGAGGGCTGGGACGGTGCCTTCA
GCGGCCGCCGCCGCCTCCGAGATGGCTGCCACTGCCGAAAGCGATGCCGC
GGGTGTGTCAAGTGCCGCTGCCGCCGCTACCGCCGCCGCCGCCGCTGCAG
CCAGCGAAGCCGCCGCTGCTGCCAACTCCGCCGCTGCCGTTTGTATGACT
CCAGGGCTTCTGGCTGTGCTGGAGGGCGGGCCGCCGCGGCTGGCCGACCT
TCTACTCGAATCTTTTTGGCAAGAGATGGTGCGCGGCGGGTATCACGCCC
CGGAAGCGCTCCGAGCCGCAGCCGGGCCGCCGCTGCGGGCCTACTTCCTT
GCAGGCGTGGAACGCGCCGGCGGGATCGCCCTTTTGGCGCCGGCGGCCTT
CTGCCCGCGCCGGTCCCTAAGCCTGTATCTGCAAGGCCCCGCTGGTGCCG
GCAAGACGGCGTTTGCGCGCGGGATGGGCGCTGCGCTGGCGGCCGCTATC
CAGCGATGGTGCGACGCCGGGGCGCCGGCGACAGCGGCGCTGGTGGTGCA
GGCGCTCAACAAACCGCTGGGGCGGCTGGCGGCGGAACTGGCGCCGCGGC
CCAACAACAACGACACGAGCACGATGGGCTTGGCGATGTCGCGGCGGCAG
ACGCTGGCGCAGGCCAAGCCGGGGCTCGTCTGCATCTCCTTCGAGGAGGT
GCCGCCGACCGCCGCCGCCGCCCCTGCTGAGGCCAGCGCCTGCGTATGCG
GGAGAAGCGGCGTTGGCGGCCGATACGGCGGCGGCGGCGGCGGCGGTAGC
GACTACAACGGCAAAGCTCATCACCCGAGCAGCAATCACTTCAAAGCGAA
CTTGGATGGGTGTAGAGCCTCGAGAGGCAGAGGCAGATGTGGCGCCAGCA
GCTACTGTCACAGCGCGAGTGGCTGTGGCGGGGACAGCAGTGGCACGAGC
AGCGGCGGCAACGGAACTGGAGTAGCGAACGACGCGGAGAGCGACTCGGA
CCAGCGGGTGGAGCAAGCAGCGGCGCTGGAGCTGGTGGCGCGGCGCTTCC
AGCATCTCTCCGGCGACGCATCTCTGATTGCCGTCTTCACCAGTAACTAC
GACCTCTGTCCGGCGTCCGCCGTCGCACTCCGGCGCGTCGGCATGTTTCA
ACACCTCGTGGTGATGCCGGCGTCGCCGCTGGCAGGCGCGGAGCGAAGAG
CCTTTGCGCTGGCGTACGCGGATGCGGCGCTCCAGAGAGCCCTTCCGCGC
GCATTGGCGGCAGCGGCTGCGGCGGCGATGGCGGCGGAAACGGCGGCAGT
GATAGCGACGGCGGCAGCGACGACAGCACGAACAGCGGAAGCGGTCTTGG
CAGCGACGGCTCGAGCTGTGGCTAGGGAAAGGGGAAGAATAGCAGCAGCA
GTGGTAGCGGAAGAGGCGAAACGGACACCGACAGCTGCGTCTGCGGCGTC
AGCGGCGGCGGTGGAGTCGGACGCGGCGGCGGGAGCGGCACCCGCAGCGG
CGGCGATTCAAGTCCCAGCATTGCGAGGTAAGGTCTTGCAGGCGGAAGTG
CCACTAGTAGCCGGGGAGGGCGACGTGCGGTTGCTCGTCGCACAGTTGCG
TTGGGCGGTGGCGTGGGCTGCCGCAGAGGCTGTCCGCGCTCACCGCCAGA
ATGCGGTGGCATTTGCGGACTTTGGCGTTCGAATATGTTGTGACGGCGAC
ATCTCGGGGGATGATATGACCATAGAGACGCGGGATAAGACCCGCATCGT
GGAAGTGTGGATGGAGCCTGCAGCGACCGCCGCCGCCGCAGCTTCTTCCT
CTTCCGCCATCGCTGGCAACGGCGCCACTAGTAGCCCCGCCACTGGTGCT
GGCAAGGTGGCAGGTGCTGCTGTCCTCAACGACCACAGAAAGATTGCCCC
GGCGTATGTCCGCCTGCTTGCTCCGGCGTCGTCGGTATGCGGCAACGGTA
GCTTTTGGGGAG

Coding sequence (CDS) from alignment at P-wetherbeei_contig100:11635..14446+

>mRNA_P-wetherbeei_contig100.4.1 ID=mRNA_P-wetherbeei_contig100.4.1|Name=mRNA_P-wetherbeei_contig100.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2811bp|location=Sequence derived from alignment at P-wetherbeei_contig100:11635..14446+ (Phaeothamnion wetherbeei SAG_119_79)
AGTACACAGTACAGTACAGTATACTGTACTGTACAGTATCCCGCCGCCGC
AATGGAACGCGCTACAAAACGTCGGTGCAGCCAAGGTAGCCTCGATATGA
CCCCCGCGGAACCGCCTGCCCAGTTCTTTTCGCTCCTCTTTTCTTCGTCG
TCGGCGTTTGAGGCGAGATGCGGCGGCGCGGAGGCCCAAGATATCTTGCT
GCAATGCCTTCGCGGCTCTGGCCTGCGCGCAAGCGCCATCAGTAGTCCCA
ATTTGGCCGTCAGCGTGCACGTGGGCAGCGCCCCGATCCCCTTGCCTCCG
GGTGCTGGTCCGGAAGTCATTCTCGTCCGCAGCATGCTTGGGACGCACCC
TCAGCAAGACGAACTCGAAGGCGAGTTTCAAGCATGGCGTCCATCGCACG
TCCTGAACTTGTTTTCGCAGGCCATCGCTCGCCTCGACGCCATGCGTGGG
AGGTCGGCGTCATCAAGCGCAGCAGCAGCAGCAGCGGCGGCGGCGGTAAC
AGCGCCAGCAACGCCTGCGGCGCTGGCGACAGACACAGTGTCAGGACTGG
CCTTAGCAGACGCACTGGAGACGCGAGCAGAGGCGCTAATTTCTGAAGCG
GTCGCGGCGCATGGGTCAGGCTTGCGGCTGGGTCTCGAGAAGGAGCTTTC
ACGCATTGTCGCCGCCACGTCGACGTTCGCCGCGGCATCACTTCGCTACT
TTTTGGAGCAAACGAGGCTGCCGCTGCACGAGATTGTGCTGCGCCCCGCC
GCCGCTTTGGCAACGACGACGATGACGACAACGGTGGCGGCTGCCGCTGC
GGGTCCCAAAAGCACCAGCAACCGCCCCGCCGCCCGCATGACCCTTGTGC
TGCAAGGCGACTGTTCCGCCGTCAAGGTGAGGGCTGGGACGGTGCCTTCA
GCGGCCGCCGCCGCCTCCGAGATGGCTGCCACTGCCGAAAGCGATGCCGC
GGGTGTGTCAAGTGCCGCTGCCGCCGCTACCGCCGCCGCCGCCGCTGCAG
CCAGCGAAGCCGCCGCTGCTGCCAACTCCGCCGCTGCCGTTTGTATGACT
CCAGGGCTTCTGGCTGTGCTGGAGGGCGGGCCGCCGCGGCTGGCCGACCT
TCTACTCGAATCTTTTTGGCAAGAGATGGTGCGCGGCGGGTATCACGCCC
CGGAAGCGCTCCGAGCCGCAGCCGGGCCGCCGCTGCGGGCCTACTTCCTT
GCAGGCGTGGAACGCGCCGGCGGGATCGCCCTTTTGGCGCCGGCGGCCTT
CTGCCCGCGCCGGTCCCTAAGCCTGTATCTGCAAGGCCCCGCTGGTGCCG
GCAAGACGGCGTTTGCGCGCGGGATGGGCGCTGCGCTGGCGGCCGCTATC
CAGCGATGGTGCGACGCCGGGGCGCCGGCGACAGCGGCGCTGGTGGTGCA
GGCGCTCAACAAACCGCTGGGGCGGCTGGCGGCGGAACTGGCGCCGCGGC
CCAACAACAACGACACGAGCACGATGGGCTTGGCGATGTCGCGGCGGCAG
ACGCTGGCGCAGGCCAAGCCGGGGCTCGTCTGCATCTCCTTCGAGGAGGT
GCCGCCGACCGCCGCCGCCGCCCCTGCTGAGGCCAGCGCCTGCGTATGCG
GGAGAAGCGGCGTTGGCGGCCGATACGGCGGCGGCGGCGGCGGCGGTAGC
GACTACAACGGCAAAGCTCATCACCCGAGCAGCAATCACTTCAAAGCGAA
CTTGGATGGGTGTAGAGCCTCGAGAGGCAGAGGCAGATGTGGCGCCAGCA
GCTACTGTCACAGCGCGAGTGGCTGTGGCGGGGACAGCAGTGGCACGAGC
AGCGGCGGCAACGGAACTGGAGTAGCGAACGACGCGGAGAGCGACTCGGA
CCAGCGGGTGGAGCAAGCAGCGGCGCTGGAGCTGGTGGCGCGGCGCTTCC
AGCATCTCTCCGGCGACGCATCTCTGATTGCCGTCTTCACCAGTAACTAC
GACCTCTGTCCGGCGTCCGCCGTCGCACTCCGGCGCGTCGGCATGTTTCA
ACACCTCGTGGTGATGCCGGCGTCGCCGCTGGCAGGCGCGGAGCGAAGAG
CCTTTGCGCTGGCGTACGCGGATGCGGCGCTCCAGAGAGCCCTTCCGCGC
GCATTGGCGGCAGCGGCTGCGGCGGCGATGGCGGCGGAAACGGCGGCAGT
GATAGCGACGGCGGCAGCGACGACAGCACGAACAGCGGAAGCGGTCTTGG
CAGCGACGGCTCGAGCTGTGGCTAGGGAAAGGGGAAGAATAGCAGCAGCA
GTGGTAGCGGAAGAGGCGAAACGGACACCGACAGCTGCGTCTGCGGCGTC
AGCGGCGGCGGTGGAGTCGGACGCGGCGGCGGGAGCGGCACCCGCAGCGG
CGGCGATTCAAGTCCCAGCATTGCGAGGTAAGGTCTTGCAGGCGGAAGTG
CCACTAGTAGCCGGGGAGGGCGACGTGCGGTTGCTCGTCGCACAGTTGCG
TTGGGCGGTGGCGTGGGCTGCCGCAGAGGCTGTCCGCGCTCACCGCCAGA
ATGCGGTGGCATTTGCGGACTTTGGCGTTCGAATATGTTGTGACGGCGAC
ATCTCGGGGGATGATATGACCATAGAGACGCGGGATAAGACCCGCATCGT
GGAAGTGTGGATGGAGCCTGCAGCGACCGCCGCCGCCGCAGCTTCTTCCT
CTTCCGCCATCGCTGGCAACGGCGCCACTAGTAGCCCCGCCACTGGTGCT
GGCAAGGTGGCAGGTGCTGCTGTCCTCAACGACCACAGAAAGATTGCCCC
GGCGTATGTCCGCCTGCTTGCTCCGGCGTCGTCGGTATGCGGCAACGGTA
GCTTTTGGGGA