mRNA_P-wetherbeei_contig100.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig100.1.1
Unique NamemRNA_P-wetherbeei_contig100.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig100contigP-wetherbeei_contig100:2181..4532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2352
Hectar predicted targeting categoryother localisation
Exons1
Cds size1929
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185849.0151916-UTR-P-wetherbeei_contig100:2180..21961683185849.0151916-UTR-P-wetherbeei_contig100:2180..2196Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig100 2181..2196 +
1683185849.0359366-UTR-P-wetherbeei_contig100:4125..45321683185849.0359366-UTR-P-wetherbeei_contig100:4125..4532Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig100 4126..4532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185849.025991-CDS-P-wetherbeei_contig100:2196..41251683185849.025991-CDS-P-wetherbeei_contig100:2196..4125Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig100 2197..4125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig100.1.1prot_P-wetherbeei_contig100.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig100 2197..4125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig100.1.1

>prot_P-wetherbeei_contig100.1.1 ID=prot_P-wetherbeei_contig100.1.1|Name=mRNA_P-wetherbeei_contig100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=643bp
MPNLRAARSRNMSGQKSWRFPFGGANATAATGGGSGGGAGGGGGDPEVEG
SGPSSRSPVLSPREQAEAILGPLVLPRTLPSRLVKPWLQQPAAAVTAAAA
ADQRAAKERGASAGGGVVGSDGCGGGSDSRGSGVTGSRDSGSCGGAGPPP
MEEIAAVAAAAAGDLTGASPPYPMVPASRSFSPGGRRSGSASVASAGGPL
VLLGGALTNGALASISGRDGGGGSNGGGGGAGTGGWEAFSDNNGGGSSPL
HEGDNASTLSNTSTAITDLSMRLDKIEELLIRLLNAGGGGGRVLQRSVGG
GSGSGGGDGGGTGATSGGGSRTALLAAAAVALLEDDAASLAGATVPTDRP
DPGTASRRGSSGTLPLPDPPRGSCGNGRSGGDVRRISGGDRSSGAYGSGA
GPGGGRDDPRSADVGGGGGGGGSDLDPEVFLWDTFQEVQQVRAQLAHLGA
LQHPAWGGRVAHGAAMAANAPSRSGAGAAGGGGDHRSAEGGGGGSGGTGE
VKGGREEVFSAAAAAVAAVVAEPGEARETREASTGSARSGGGDADDGERS
TASAGARSWWFLRRAIAKKQEPQPSTAAGIGAVAADIGGRMTVDGGSGGG
DGGGGSGDDDTLAGPEAGFPAVGHTGGLSCIEEAAEAEHGAA*
back to top

mRNA from alignment at P-wetherbeei_contig100:2181..4532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig100.1.1 ID=mRNA_P-wetherbeei_contig100.1.1|Name=mRNA_P-wetherbeei_contig100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2352bp|location=Sequence derived from alignment at P-wetherbeei_contig100:2181..4532+ (Phaeothamnion wetherbeei SAG_119_79)
GGGACTGCGGCTGCTCATGCCGAACCTTCGCGCGGCCCGTTCACGCAACA
TGTCTGGTCAGAAGTCGTGGCGCTTCCCATTCGGCGGGGCGAATGCCACT
GCGGCCACCGGCGGTGGTAGCGGCGGCGGCGCCGGCGGCGGCGGCGGCGA
CCCCGAAGTGGAGGGGAGCGGCCCATCTTCCAGATCGCCGGTGCTGAGCC
CGAGAGAGCAGGCCGAGGCGATACTGGGGCCGCTGGTGCTGCCGCGGACG
CTGCCGTCGCGGCTGGTCAAGCCGTGGCTGCAGCAGCCGGCCGCCGCTGT
CACTGCGGCTGCCGCCGCTGATCAAAGGGCGGCAAAGGAAAGAGGCGCTT
CTGCGGGCGGCGGAGTAGTTGGCAGCGACGGCTGCGGTGGCGGCAGTGAC
AGCAGGGGCAGTGGCGTGACTGGCAGCAGGGACAGCGGCAGCTGCGGCGG
TGCAGGACCCCCGCCGATGGAAGAAATCGCAGCCGTGGCGGCTGCGGCGG
CAGGGGACCTCACCGGAGCGAGCCCACCTTACCCCATGGTGCCTGCCAGC
CGCAGTTTCAGTCCGGGTGGCCGTCGGAGCGGCAGCGCCAGCGTCGCCTC
TGCCGGCGGTCCGCTGGTGCTGTTGGGCGGGGCGCTCACGAACGGCGCGT
TGGCGAGCATCTCTGGCCGGGATGGTGGTGGTGGCAGCAACGGCGGCGGC
GGCGGCGCCGGCACAGGCGGCTGGGAAGCCTTCTCAGACAACAACGGTGG
CGGTTCATCGCCGCTCCACGAGGGGGATAACGCGTCTACGCTCTCCAACA
CGTCGACGGCGATCACAGACCTCTCGATGCGCCTCGACAAAATCGAGGAG
CTGCTGATCAGGCTGCTGAATGCTGGCGGCGGCGGCGGCAGAGTGCTGCA
GCGCAGCGTAGGTGGTGGGAGCGGCAGCGGTGGTGGCGACGGCGGCGGTA
CTGGAGCGACGAGCGGTGGAGGCAGTCGCACAGCGCTGTTGGCTGCGGCG
GCGGTGGCCCTGCTGGAAGACGACGCCGCGTCCCTTGCCGGGGCGACGGT
GCCGACGGACCGCCCTGACCCCGGAACGGCCAGCCGGAGGGGCAGCAGTG
GGACGTTGCCGCTGCCTGATCCGCCGAGAGGCAGTTGCGGCAACGGCAGA
AGCGGTGGCGACGTGCGACGCATCAGCGGTGGCGACCGCAGTAGCGGCGC
CTATGGCAGTGGTGCTGGCCCCGGCGGCGGACGCGATGACCCCAGGAGTG
CAGACGTCGGCGGCGGCGGCGGCGGCGGTGGTAGCGACCTCGACCCAGAA
GTGTTCTTGTGGGACACGTTTCAAGAAGTTCAACAGGTTCGAGCGCAGCT
GGCACATCTCGGAGCGCTCCAGCACCCGGCGTGGGGAGGTCGGGTGGCGC
ACGGCGCCGCAATGGCGGCAAATGCGCCGAGCAGAAGCGGCGCCGGAGCC
GCTGGTGGCGGCGGTGACCACAGGAGTGCAGAGGGCGGCGGCGGCGGCAG
CGGCGGCACTGGAGAGGTAAAGGGTGGCCGAGAAGAGGTTTTCTCCGCCG
CTGCTGCCGCCGTGGCAGCAGTCGTGGCCGAGCCGGGAGAGGCTCGTGAG
ACGAGAGAGGCATCGACGGGATCGGCGCGCAGCGGCGGTGGCGACGCGGA
CGACGGCGAACGGAGCACCGCATCGGCCGGCGCGCGATCGTGGTGGTTTC
TGCGACGGGCCATCGCCAAGAAGCAAGAGCCGCAGCCATCGACTGCAGCC
GGCATTGGTGCCGTTGCGGCAGACATCGGCGGCCGTATGACTGTTGACGG
CGGCAGTGGTGGCGGCGATGGCGGCGGTGGAAGCGGCGACGATGATACGC
TCGCTGGGCCAGAGGCAGGGTTTCCGGCCGTGGGCCACACTGGCGGGCTG
TCCTGCATCGAGGAGGCGGCAGAGGCGGAACACGGAGCTGCGTAGCGGCA
AGCACCGGTGCCCCTTTGCTGTTTGGGGTGGTCGTCAAAGCGGCGGTCTG
CTTTTTGGGGGTTCGAAAGATTGGGAAGATTTGGGCGGGATACATTTTTG
GAAAATACGCCTCTGTAACTGTGTGTACAGAAGGGAAGGGTACCATTTGG
TCCCGCGGTGGCGGTGGCGCGCGCGGTGGCGCTCTCCTCCGACGTGGGCT
TCTCCCGCGCTGCGGCGACGGCGATGGTTGTGCGTCCGGCACGAGGACGA
GAAAGAAAGAGGAAAGATTGAAGAGAGAGAAAATTGATTGATTGACCCGC
CTGGCTGGCCGTTGGAATGCCGGCGGGCGGGGGGAGAGACCACGGCAACA
CAAACATCATACTTGGACTGAATCCCTTAAAAACAGTTTGCAACCTGCGT
CC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig100:2181..4532+

>mRNA_P-wetherbeei_contig100.1.1 ID=mRNA_P-wetherbeei_contig100.1.1|Name=mRNA_P-wetherbeei_contig100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1929bp|location=Sequence derived from alignment at P-wetherbeei_contig100:2181..4532+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAACCTTCGCGCGGCCCGTTCACGCAACATGTCTGGTCAGAAGTC
GTGGCGCTTCCCATTCGGCGGGGCGAATGCCACTGCGGCCACCGGCGGTG
GTAGCGGCGGCGGCGCCGGCGGCGGCGGCGGCGACCCCGAAGTGGAGGGG
AGCGGCCCATCTTCCAGATCGCCGGTGCTGAGCCCGAGAGAGCAGGCCGA
GGCGATACTGGGGCCGCTGGTGCTGCCGCGGACGCTGCCGTCGCGGCTGG
TCAAGCCGTGGCTGCAGCAGCCGGCCGCCGCTGTCACTGCGGCTGCCGCC
GCTGATCAAAGGGCGGCAAAGGAAAGAGGCGCTTCTGCGGGCGGCGGAGT
AGTTGGCAGCGACGGCTGCGGTGGCGGCAGTGACAGCAGGGGCAGTGGCG
TGACTGGCAGCAGGGACAGCGGCAGCTGCGGCGGTGCAGGACCCCCGCCG
ATGGAAGAAATCGCAGCCGTGGCGGCTGCGGCGGCAGGGGACCTCACCGG
AGCGAGCCCACCTTACCCCATGGTGCCTGCCAGCCGCAGTTTCAGTCCGG
GTGGCCGTCGGAGCGGCAGCGCCAGCGTCGCCTCTGCCGGCGGTCCGCTG
GTGCTGTTGGGCGGGGCGCTCACGAACGGCGCGTTGGCGAGCATCTCTGG
CCGGGATGGTGGTGGTGGCAGCAACGGCGGCGGCGGCGGCGCCGGCACAG
GCGGCTGGGAAGCCTTCTCAGACAACAACGGTGGCGGTTCATCGCCGCTC
CACGAGGGGGATAACGCGTCTACGCTCTCCAACACGTCGACGGCGATCAC
AGACCTCTCGATGCGCCTCGACAAAATCGAGGAGCTGCTGATCAGGCTGC
TGAATGCTGGCGGCGGCGGCGGCAGAGTGCTGCAGCGCAGCGTAGGTGGT
GGGAGCGGCAGCGGTGGTGGCGACGGCGGCGGTACTGGAGCGACGAGCGG
TGGAGGCAGTCGCACAGCGCTGTTGGCTGCGGCGGCGGTGGCCCTGCTGG
AAGACGACGCCGCGTCCCTTGCCGGGGCGACGGTGCCGACGGACCGCCCT
GACCCCGGAACGGCCAGCCGGAGGGGCAGCAGTGGGACGTTGCCGCTGCC
TGATCCGCCGAGAGGCAGTTGCGGCAACGGCAGAAGCGGTGGCGACGTGC
GACGCATCAGCGGTGGCGACCGCAGTAGCGGCGCCTATGGCAGTGGTGCT
GGCCCCGGCGGCGGACGCGATGACCCCAGGAGTGCAGACGTCGGCGGCGG
CGGCGGCGGCGGTGGTAGCGACCTCGACCCAGAAGTGTTCTTGTGGGACA
CGTTTCAAGAAGTTCAACAGGTTCGAGCGCAGCTGGCACATCTCGGAGCG
CTCCAGCACCCGGCGTGGGGAGGTCGGGTGGCGCACGGCGCCGCAATGGC
GGCAAATGCGCCGAGCAGAAGCGGCGCCGGAGCCGCTGGTGGCGGCGGTG
ACCACAGGAGTGCAGAGGGCGGCGGCGGCGGCAGCGGCGGCACTGGAGAG
GTAAAGGGTGGCCGAGAAGAGGTTTTCTCCGCCGCTGCTGCCGCCGTGGC
AGCAGTCGTGGCCGAGCCGGGAGAGGCTCGTGAGACGAGAGAGGCATCGA
CGGGATCGGCGCGCAGCGGCGGTGGCGACGCGGACGACGGCGAACGGAGC
ACCGCATCGGCCGGCGCGCGATCGTGGTGGTTTCTGCGACGGGCCATCGC
CAAGAAGCAAGAGCCGCAGCCATCGACTGCAGCCGGCATTGGTGCCGTTG
CGGCAGACATCGGCGGCCGTATGACTGTTGACGGCGGCAGTGGTGGCGGC
GATGGCGGCGGTGGAAGCGGCGACGATGATACGCTCGCTGGGCCAGAGGC
AGGGTTTCCGGCCGTGGGCCACACTGGCGGGCTGTCCTGCATCGAGGAGG
CGGCAGAGGCGGAACACGGAGCTGCGTAG
back to top