mRNA_P-wetherbeei_contig1.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1.9.1
Unique NamemRNA_P-wetherbeei_contig1.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: A0A1L3STK6_9HYPH (50S ribosomal protein L16 n=9 Tax=Proteobacteria TaxID=1224 RepID=A0A1L3STK6_9HYPH)

HSP 1 Score: 159 bits (401), Expect = 4.120e-45
Identity = 75/131 (57.25%), Postives = 99/131 (75.57%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TK+RKQ+KGR+        NL FG  GL+A+EP  +TARQIE+AR+ I R+++R+G++WI IFP++PVT KPTEVRMGKGKG V YWA R+  G+++FE+DGVS  +A  ALR  A KLP+R  F
Sbjct:    1 MLQPKRTKFRKQFKGRIHGASKGGTNLDFGAFGLKAMEPERVTARQIEAARRAITREMKRQGRVWIRIFPDVPVTSKPTEVRMGKGKGAVDYWACRVKPGRIMFELDGVSEEIAREALRLGAAKLPVRTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: A0A5B8KVE4_9HYPH (50S ribosomal protein L16 n=3 Tax=Nitratireductor TaxID=245876 RepID=A0A5B8KVE4_9HYPH)

HSP 1 Score: 159 bits (401), Expect = 4.120e-45
Identity = 74/131 (56.49%), Postives = 99/131 (75.57%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TK+RKQ+KGR+         L FG  GL+ALEP  +TARQIE+AR+ I R+++R+G++WI IFP++PVT KPTEVRMGKGKG+V YW  R+  G+++FE+DGVS T+A  ALR  A KLP++  F
Sbjct:    1 MLQPKRTKFRKQFKGRIHGAAKGGTKLDFGSFGLKALEPERVTARQIEAARRAITREMKRQGRVWIRIFPDVPVTSKPTEVRMGKGKGSVDYWVCRVKPGRIMFELDGVSETIAREALRLGAAKLPVKTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: E6YIC3_BARC7 (50S ribosomal protein L16 n=12 Tax=Bartonella TaxID=773 RepID=E6YIC3_BARC7)

HSP 1 Score: 157 bits (398), Expect = 1.160e-44
Identity = 75/131 (57.25%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TK+RKQ+KGR+  +      L FG  GL+A+EP  ITARQIE+AR+ I R ++R G++WI IFP++PVT KPTEVRMGKGKG+V YWA R+  G+++FE+DGVS  VA  ALR  A KLP++  F
Sbjct:    1 MLQPKRTKFRKQFKGRIHGYSKGGTGLNFGAYGLKAVEPERITARQIEAARRAITRYMKRSGRVWIRIFPDVPVTSKPTEVRMGKGKGSVDYWAARVAPGRVMFELDGVSEDVAREALRLGAAKLPIKTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: B7RL71_ROSS0 (50S ribosomal protein L16 n=9 Tax=root TaxID=1 RepID=B7RL71_ROSS0)

HSP 1 Score: 157 bits (398), Expect = 1.160e-44
Identity = 75/134 (55.97%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPL--RVIFR 660
            MLQP+ TK+RKQ+KG++       ++L FG  GL+ALEP  +TARQIE+AR+ + R ++R+G++WI IFP++PVT KPTEVRMGKGKG+V YWA R+  G+++FEIDGV+  +A+ ALR AA KLP+  RV+ R
Sbjct:    1 MLQPKRTKFRKQHKGKIKGLAKGGSDLNFGTFGLKALEPERVTARQIEAARRAMTRHMKRQGRVWIRIFPDLPVTSKPTEVRMGKGKGSVDYWACRVKPGRVMFEIDGVNEDIAHEALRLAAMKLPIKTRVVVR 134
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: A0A6S6QUF9_9HYPH (50S ribosomal protein L16 n=1 Tax=Terrihabitans soli TaxID=708113 RepID=A0A6S6QUF9_9HYPH)

HSP 1 Score: 157 bits (398), Expect = 1.160e-44
Identity = 74/131 (56.49%), Postives = 100/131 (76.34%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            ML P+ TK+RKQ+KGR++        L FG  GL+ALEP  +TARQIE+AR+ + R+++R+G++WI +FP++PVT+KPTEVRMGKGKG V  WA R+  G+++FE+DGVS TVA  ALR AA KLP+R  F
Sbjct:    1 MLSPKRTKFRKQFKGRISGTAKGGTTLTFGSFGLKALEPERVTARQIEAARRAMTREMKRQGRVWIRVFPDVPVTKKPTEVRMGKGKGAVELWAARVAPGRIMFELDGVSETVAREALRLAAAKLPIRTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: A0A231UTC5_9HYPH (50S ribosomal protein L16 n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A231UTC5_9HYPH)

HSP 1 Score: 157 bits (397), Expect = 1.640e-44
Identity = 74/131 (56.49%), Postives = 99/131 (75.57%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TKYRKQ+KGR+++       L FG  G++A EP  +TARQIE+AR+ I R ++R+G++WI IFP++PVT KPTEVRMGKGKG+V YWA R+  G+++FEIDGV+  VA  ALR  A KLP++  F
Sbjct:    1 MLQPKRTKYRKQFKGRISNRAKGGTALNFGSYGIKATEPERVTARQIEAARRAITRHMKRQGRVWIRIFPDLPVTSKPTEVRMGKGKGSVDYWAARVAPGRIMFEIDGVNEEVAREALRLGAAKLPVKTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: A0A367ZY15_9HYPH (50S ribosomal protein L16 n=1 Tax=Candidatus Tokpelaia sp. JSC085 TaxID=2079008 RepID=A0A367ZY15_9HYPH)

HSP 1 Score: 156 bits (395), Expect = 3.270e-44
Identity = 77/131 (58.78%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TK+RKQ+KGR+         L FG  G++ALEP  ITARQIE+AR+ I R ++R G++WI IFP+IPVT KPTEVRMGKGKGNV YW  R+  G+++FE+DGVS  VA  ALR  A KLP+R  F
Sbjct:    1 MLQPKRTKFRKQFKGRIHGNAKGGTRLNFGAFGMKALEPERITARQIEAARRAITRYMKRAGRVWICIFPDIPVTSKPTEVRMGKGKGNVDYWVARVAPGRVMFELDGVSEDVAREALRLGAAKLPIRTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: A0A2H6BBL2_9HYPH (50S ribosomal protein L16 n=3 Tax=Methylocystaceae TaxID=31993 RepID=A0A2H6BBL2_9HYPH)

HSP 1 Score: 156 bits (395), Expect = 3.270e-44
Identity = 73/131 (55.73%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TK+RKQ+KGR++       NL FG  GL+ALEP  ITARQIE+AR+ + R ++R G++WI ++P++PVT KPTEVRMGKGKG   YWA ++  G+++FEIDGVS+ +A  AL  AA KLP+R  F
Sbjct:    1 MLQPKKTKFRKQFKGRISGAAKGGFNLDFGAFGLKALEPERITARQIEAARRALTRHMKRAGRVWIRVYPDVPVTSKPTEVRMGKGKGATDYWAAKVKPGRIMFEIDGVSIEIAKEALALAAAKLPIRTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: A0A0Q6C5M5_9HYPH (50S ribosomal protein L16 n=2 Tax=Aurantimonadaceae TaxID=255475 RepID=A0A0Q6C5M5_9HYPH)

HSP 1 Score: 156 bits (395), Expect = 3.270e-44
Identity = 74/131 (56.49%), Postives = 99/131 (75.57%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TK+RK +KGR+        NL +G  GL+A+EP  +TARQIE+AR+ I R+++R+G++WI IFP++PVT KPTEVRMGKGKG+V YWA R+  G+++FEIDGVS  +A  ALR  A KLP+R  F
Sbjct:    1 MLQPKRTKFRKAFKGRIHGTAKGGTNLDYGTFGLKAVEPERVTARQIEAARRAITRQMKRQGRVWIRIFPDVPVTAKPTEVRMGKGKGSVEYWAARVHPGRIMFEIDGVSEELAREALRLGAAKLPIRTRF 131
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BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Match: I5BUN6_9HYPH (50S ribosomal protein L16 n=5 Tax=Phyllobacteriaceae TaxID=69277 RepID=I5BUN6_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 4.620e-44
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:  265 MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESARQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAGKLLFEIDGVSLTVAYNALRSAANKLPLRVIF 657
            MLQP+ TK+RKQ+KGR+         L FG  GL+ALEP  +TARQIE+AR+ I R ++R+G++WI IFP++PVT KPTEVRMGKGKG+V YWA R+  G+++FEIDGV   +A  ALR  A KLP++  F
Sbjct:    1 MLQPKRTKFRKQFKGRIHGAAKGGTELNFGSFGLKALEPERVTARQIEAARRAITRYMKRQGRVWIRIFPDLPVTSKPTEVRMGKGKGSVDYWACRVKPGRVMFEIDGVGADIAREALRLGAAKLPVKTRF 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L3STK6_9HYPH4.120e-4557.2550S ribosomal protein L16 n=9 Tax=Proteobacteria T... [more]
A0A5B8KVE4_9HYPH4.120e-4556.4950S ribosomal protein L16 n=3 Tax=Nitratireductor ... [more]
E6YIC3_BARC71.160e-4457.2550S ribosomal protein L16 n=12 Tax=Bartonella TaxI... [more]
B7RL71_ROSS01.160e-4455.9750S ribosomal protein L16 n=9 Tax=root TaxID=1 Rep... [more]
A0A6S6QUF9_9HYPH1.160e-4456.4950S ribosomal protein L16 n=1 Tax=Terrihabitans so... [more]
A0A231UTC5_9HYPH1.640e-4456.4950S ribosomal protein L16 n=4 Tax=Hyphomicrobiales... [more]
A0A367ZY15_9HYPH3.270e-4458.7850S ribosomal protein L16 n=1 Tax=Candidatus Tokpe... [more]
A0A2H6BBL2_9HYPH3.270e-4455.7350S ribosomal protein L16 n=3 Tax=Methylocystaceae... [more]
A0A0Q6C5M5_9HYPH3.270e-4456.4950S ribosomal protein L16 n=2 Tax=Aurantimonadacea... [more]
I5BUN6_9HYPH4.620e-4456.4950S ribosomal protein L16 n=5 Tax=Phyllobacteriace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1contigP-wetherbeei_contig1:19641..20561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1231190.NA8A_21526
Preferred namerplP
PFAMsRibosomal_L16
Model size921
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02878
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904
Exons1
Evalue1.92e-48
EggNOG OGsCOG0197@1|root,COG0197@2|Bacteria,1RA0Z@1224|Proteobacteria,2U710@28211|Alphaproteobacteria,43JJR@69277|Phyllobacteriaceae
DescriptionBinds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Cds size399
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185848.1226537-UTR-P-wetherbeei_contig1:19640..198981683185848.1226537-UTR-P-wetherbeei_contig1:19640..19898Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1 19641..19898 -
1683185848.145591-UTR-P-wetherbeei_contig1:20297..205611683185848.145591-UTR-P-wetherbeei_contig1:20297..20561Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1 20298..20561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185848.1352978-CDS-P-wetherbeei_contig1:19898..202971683185848.1352978-CDS-P-wetherbeei_contig1:19898..20297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1 19899..20297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1.9.1prot_P-wetherbeei_contig1.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1 19899..20297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1.9.1

>prot_P-wetherbeei_contig1.9.1 ID=prot_P-wetherbeei_contig1.9.1|Name=mRNA_P-wetherbeei_contig1.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MLQPRNTKYRKQYKGRVAHFLLHQNNLQFGKCGLQALEPGYITARQIESA
RQTIRRKLERKGKLWIHIFPNIPVTEKPTEVRMGKGKGNVSYWATRIPAG
KLLFEIDGVSLTVAYNALRSAANKLPLRVIFR*
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mRNA from alignment at P-wetherbeei_contig1:19641..20561-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1.9.1 ID=mRNA_P-wetherbeei_contig1.9.1|Name=mRNA_P-wetherbeei_contig1.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig1:19641..20561- (Phaeothamnion wetherbeei SAG_119_79)
CAAACCGTAATCATCCAGCATTTTTAAATTTTTTTAGAGAAACAGCCAAT
CTTTACTTGAGTCAATTAAAAAAGCCGCGAATTAAAGGTTTTAAAATAAC
AATAAATGGGCGGCTTAGAGGACGTAATCGTTCGGCTAGTGAAACTATAG
AAATAGGGCAAGTACCGACACAAAAACTTAGCCAACGGATGGATACTAGC
TTTCTCCAAGCTCAAACTAAATTTGGCAGTTTTGGAATTAAAATATGGCT
TGCCTTTGCATATCATGCTTCAACCTCGAAACACAAAATATCGAAAACAA
TATAAAGGTCGTGTTGCACATTTTCTTCTTCATCAAAACAATTTACAATT
TGGAAAATGTGGACTTCAAGCTCTTGAGCCTGGTTATATCACAGCTCGCC
AAATTGAATCTGCTCGCCAAACTATTCGTCGAAAGTTAGAAAGAAAAGGA
AAATTATGGATTCATATTTTTCCCAATATTCCTGTAACCGAAAAGCCAAC
AGAAGTACGAATGGGAAAAGGTAAAGGTAATGTCTCATATTGGGCAACAC
GTATACCTGCGGGAAAATTACTTTTTGAAATAGATGGCGTATCATTAACA
GTAGCCTATAATGCATTGCGTTCCGCTGCTAATAAATTACCACTTCGTGT
TATTTTTCGATGAATAAATTTATTACGCAACCTTGGATTGATTTTCCATT
TAACGCTAAACAACAAGTTTCTCTTTCTCCTATATTAAAGACAAAAGAAA
ATAAAAAGATTTATACAAATTATATACCATATAATAAAGCACAAACTTGT
AAAATCTTTAAAAATGTTTTTGACATAGGGTTAGATCGAGATTATAAAGA
CCTTAATTTGTTATTACGCTCAAATTTAACCGCACAAAATAAGACTAAAT
TATTCTTAACTCAAAGCTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1:19641..20561-

>mRNA_P-wetherbeei_contig1.9.1 ID=mRNA_P-wetherbeei_contig1.9.1|Name=mRNA_P-wetherbeei_contig1.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig1:19641..20561- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCAACCTCGAAACACAAAATATCGAAAACAATATAAAGGTCGTGT
TGCACATTTTCTTCTTCATCAAAACAATTTACAATTTGGAAAATGTGGAC
TTCAAGCTCTTGAGCCTGGTTATATCACAGCTCGCCAAATTGAATCTGCT
CGCCAAACTATTCGTCGAAAGTTAGAAAGAAAAGGAAAATTATGGATTCA
TATTTTTCCCAATATTCCTGTAACCGAAAAGCCAACAGAAGTACGAATGG
GAAAAGGTAAAGGTAATGTCTCATATTGGGCAACACGTATACCTGCGGGA
AAATTACTTTTTGAAATAGATGGCGTATCATTAACAGTAGCCTATAATGC
ATTGCGTTCCGCTGCTAATAAATTACCACTTCGTGTTATTTTTCGATGA
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