prot_P-canaliculata_contig100.47.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig100.47.1
Unique Nameprot_P-canaliculata_contig100.47.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length529
Homology
BLAST of mRNA_P-canaliculata_contig100.47.1 vs. uniprot
Match: D8LT38_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT38_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 4.730e-84
Identity = 215/576 (37.33%), Postives = 302/576 (52.43%), Query Frame = 0
Query:    1 MVREQVFFFNNSRRRGRWAILEGRLRLINARWLLRRMERKQLGRDAFYARTVAAYCSVRPEGGTGIQHKEALQQVSRKAKRAVKNMEEQRRKAEEMAKKAQNELEALVGPFRPRKTVRTTLREGMLMPFVLSVNRGEATARLEKIQGISEVLHWMPKGRWVRIDR--PSG------GECASVPLPPSCAMGPFVVRGVKDGNGGKIIREDGVEVEGDAFTFMSFLGFRKRGASVDETHETVGVTMGQYSTDMASKIARAPIGSHCGSHGEESAEKGSWLHSTTTRTTPLLLLNRQWLLPSTSHCRVYAMPLLPFPRKVGPGLSSLKT-----------LMCAALGLQVEHAQLSC--TNYKCVSTKLRRTSNYQHEAVQSNKRL----QRIGDCKRVVWKEHGRRRKTQGVRACAVIVQILEYL--ITKPPGTYSRTSFAGMEDHGELKSCLSQQVT-----------------IMYRSQRQESEA---VVEFVGHIWIDLDTPTPVLREFIRRFCGAWLNEHAKGERFLMEDSRGILIGRSEEGGRITATAMQMVQERFNKETRNTDYIVFVQIE 529
            MVREQ FF   ++R+GRW +   RLRL      LR   RKQ   +    + V  Y   R +GG    HKE LQQ+SRKAKRAV+N +++R KAEE  K A+N LEAL+GPFR R  VR  + EGMLMPF +S+ +G+A ARLEK Q + EVL WMP GR VR++   PS        E  + P PPS A GPF V GVK+       + D  +    A + ++     K      E   T G+  G  +T  A  I     G+  G+ G E +     +     +++P+L+L+RQWLL     C+ YAMP+LP  +K+   L  L+T           +  A +G      +L    T +   S    R   +   +   +KRL    +++ D +     E  +RR  + V +   +   L+ +    K        S  G +  G +   L ++V                  IM+RS +  +E    VV+ VG+I +DLDTPTPVLREFIRR+CG WLNEHAKG+ F+MED+ G ++ R+ EGG++ ATAM MVQER NK TR+T+ ++FV+ E
Sbjct:  713 MVREQEFFAKKTKRKGRWKVHAARLRLGGELIRLRMESRKQRKYERLRDKAVGVYQHARAKGGVSAAHKEELQQISRKAKRAVQNHQQEREKAEERVKAAENALEALIGPFRLRNNVRAAVTEGMLMPFPVSMQKGKANARLEKGQNMREVLKWMPYGRRVRVEPTDPSSVYLLPEAEAGACPRPPSHAFGPFYVVGVKESR-----QNDKKDKAAAAASALAGNLASKEPGDTKERPAT-GLGSGAAATTPAESIGEG--GTAAGADGGEDS-----VVDLKAQSSPVLILDRQWLLEEAPLCQAYAMPILPVIQKI---LMVLRTGIRDSSVVQVAIKVAVVGTHQHRDRLERWQTKFDDDSDMHARLERWAAGSEDRSKRLMLRRRKLFDVEEGFQPE--KRRVMEAVESVLALWTSLQEMTDFAKSAAATGLASTQGADGKGMIGGKLGREVVVQLFKKWVQSDDRTKVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRRYCGGWLNEHAKGDHFVMEDTTGEIVRRNREGGKLNATAMDMVQERINKTTRDTESVIFVRDE 1270          
BLAST of mRNA_P-canaliculata_contig100.47.1 vs. uniprot
Match: A0A6H5KFP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP2_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.490e-56
Identity = 183/545 (33.58%), Postives = 252/545 (46.24%), Query Frame = 0
Query:   59 RPEGGTGIQHKEALQQVSRKAKRAVKNMEEQRRKAEEMAKKAQNELEALVGPFRPRKTVRTTLREGMLMPFVLSVNRGEATARLEKIQGISE-----------------VLHWMPKGRWVRIDR---------PSGGECASVPLPPSCAMGPFVVRGVKDGNGGK-----------------IIREDGVEVEGDAFTFMSFLGFRKRGASVDETHETVGVTMGQYSTDMASKIARAPIGSHCGSHGEESAEK---GSWLHSTTTRT-------TPLLLLNRQWLLPSTSHCRVYAMPLLPFPRKVGPGLSSLKTLMCAAL------GLQVEHAQLSCTNYKCVST------------KLRRTSNYQHEAVQSNKRLQRIGDCKRVVWKEHGRRRKTQGVRACAVIVQILEYLITKPPGTYSRTSFAGMEDHGELKSCLSQQVTIMYRSQRQESEA---VVEFVGHIWIDLDTPTPVLREFIRRFCGAWLNEHAKGERFLMEDSRGILIGRSEEGGRITATAMQMVQERFNKETRNTDYIVFVQIE 529
            R +GG    HK+ LQQ SRKAKRAV+N E++R KAEE  K A+N LEAL+GPFR R  VR  + +GMLMPF +S+ +G+A ARLEK Q + E                 VL WMP GR VR++          P  G  A  P PPS A GPF V GVK+                        +E G   E  A    S         S+DE    VG   G+ S       A +  G    +  +    K    S +H+   R        +  L+L R+ L       +       P  R+V   + S+  L    L       L+V  ++ +    + V+T             L+  +++   A  +     +  D K ++  + GR           V+VQ+ +  +     T                     +V IM+RS +  +E    VV+ VG+I +DLDTPTPVLREFIRRFCG WLNEHAKG+ F+MED+ G ++ R+ EGG+  ATAM MVQER NK TR+T+ ++FVQ E
Sbjct:   38 RAKGGVSADHKDELQQNSRKAKRAVQNQEQEREKAEERVKAAENALEALIGPFRLRNNVRAAVTKGMLMPFPVSMQKGKANARLEKGQNMREASDAAICDSVLSCVVCSVLKWMPYGRRVRVEPTDPSSVYFLPEAGTRAC-PRPPSHAFGPFYVVGVKESRQSDKKEKAAATAALALAENLASKEPGDTRERPATGLGSGAAATTPAESIDEGGTAVGADGGEDSLGDLKSHAPSIFGFLNTAFSDREQTKFDDDSNMHARLERWAAGSEAWSKRLMLRRRKLFDVEEGFQ-------PEKRRVMEAVESVLALWTRILQPACRGDLRVWRSRRNMKTDETVATFSLALFGGTLNPSLQEMTDFAKSAAATGLASTQGADGKGIIGGKLGRE----------VVVQLFKKWVQSDDRT---------------------KVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRRFCGGWLNEHAKGDHFVMEDATGTVVRRNREGGKQNATAMDMVQERINKATRDTESVIFVQDE 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100.47.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT38_ECTSI4.730e-8437.33B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KFP2_9PHAE1.490e-5633.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100contigP-canaliculata_contig100:22256..29501 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100.47.1mRNA_P-canaliculata_contig100.47.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig100 13194..29501 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig100.47.1 ID=prot_P-canaliculata_contig100.47.1|Name=mRNA_P-canaliculata_contig100.47.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=529bp
MVREQVFFFNNSRRRGRWAILEGRLRLINARWLLRRMERKQLGRDAFYAR
TVAAYCSVRPEGGTGIQHKEALQQVSRKAKRAVKNMEEQRRKAEEMAKKA
QNELEALVGPFRPRKTVRTTLREGMLMPFVLSVNRGEATARLEKIQGISE
VLHWMPKGRWVRIDRPSGGECASVPLPPSCAMGPFVVRGVKDGNGGKIIR
EDGVEVEGDAFTFMSFLGFRKRGASVDETHETVGVTMGQYSTDMASKIAR
APIGSHCGSHGEESAEKGSWLHSTTTRTTPLLLLNRQWLLPSTSHCRVYA
MPLLPFPRKVGPGLSSLKTLMCAALGLQVEHAQLSCTNYKCVSTKLRRTS
NYQHEAVQSNKRLQRIGDCKRVVWKEHGRRRKTQGVRACAVIVQILEYLI
TKPPGTYSRTSFAGMEDHGELKSCLSQQVTIMYRSQRQESEAVVEFVGHI
WIDLDTPTPVLREFIRRFCGAWLNEHAKGERFLMEDSRGILIGRSEEGGR
ITATAMQMVQERFNKETRNTDYIVFVQIE
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