prot_P-canaliculata_contig10306.443.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10306.443.1
Unique Nameprot_P-canaliculata_contig10306.443.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length1090
Homology
BLAST of mRNA_P-canaliculata_contig10306.443.1 vs. uniprot
Match: D7FQU6_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU6_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 2.420e-90
Identity = 396/1174 (33.73%), Postives = 505/1174 (43.02%), Query Frame = 0
Query:    6 QASVRNRSRASDSLASAHSEYARAIARYQALSGDVCSGGXXXXXXXXXXXXXXXPDVVEAGERVVKASDAFAEAHGTAEEALKGFLEERGRVLRGSISSFKAAQAGFFVRASRCVSSSVGLE-PGDKVNRSPEKICDITQRSLAVDAA-------VEKEEAVXXXXXXXXXXXXRSEGKKQKDEDAVGEKV-GLVFDGGMLGNGGHDGDGRNRGKESGGVERSNSLTGGSRAGSKRRRSSGWFARIVFPSLRN---SVSEDXXXXXXXXXXXXXXXXGVLASGASAAAMTMRS---ALASAL---PKGEV--------DEN---RKGKLEGALTPPAVGKKESVVSQRGQVGRVSLGGGSPRRIGYEESVATDVEE--SEDYESESDTTEGFGSDDVGRDWWAEGREQ---GPRDRYSVEPSRGGNGNVDFHDSVADAARECLGALTESRVSGWKACTTAEATEAAAMPTEARDDTAFDSVKVAPSD---REGEREEG---------PAEKENESLLKNGGGAGAMCEHXXXDPPRNXXXXXXXXXXXXXXXXXXXXXXASSVLALGVDVEPCYPTEETPPAPTPRPSKTVTPVSPLPLVVATDKSQPHDSQPQP-------RTPQNRPSKRDVSPFASESSNNRESPRAWRLSWWAKASDRHRPPPPAVTFDGDSSVEEESENSVAEALSLALEAAAAGGEVAAAALSAGGAFAPALNAGDAPAMVDSGTKTKT-EFSVKAESEVSSERPARRESNQQGQRQGRHRQGQKKISNDPPLSAEKLADQHERWLEVAVDFLDVGGLGHVCGVCVAWRERLGGESGREQWTRCVRLPRGVPERLRARFYLHVLYDKPAWVSKA----GSNQYQADSYQACLAQADAEETEARAAVSPLHILDSRF------------ALVCFRWTISVAAAA-------EEPLSPS--HKWLDEIETDVLRTCPPDDAS-----EEFHN-------SAATVDAXXXXXXXXXXXXXXXXXXHDAKGDGTAESGSSSTLRSAITALFGQA----DANGGHNHTAPASGGDVVTPPGTPEAAXXXXXXXXXXXXXEAVSNNSGRSSGISNSSRMIWRRSSAMMIGGVGGGGRGTRDKLRRVLRAFGVYNRRISYCQGMNFVALCLLEASNGDDETAFWILAGMCDRLQL 1084
            QA +R R   +D LA AHS+YA++++RYQ+   D  SGG               P+VV  G+RVV ASDAFAEAHG AEE L   L ERGR LR + SS KAAQAGFFVRASRCVSSSV  E P D ++R+   + + T RS A D         V K +AV               GK+++D  A G +    VF  G+     HD     R    G  ++     G     SKRRR+SGWF R+      N   S SE+                   + G     + +RS   A AS+    PKG++        D N   R G      T  A        S     G V                          DYE+ S+TTEGFGSDD G  W  +GR      P DR S  P+  G+ + +  +       E  G   E   S  K         AA  P+ A ++   + +  A  +    E  +EEG         PA   + ++       GA          R+                      A    A   D+    PT  +P      PS+   P S LP++      +     P P       RTP     K   SP  S+ S+ +ESPRAWRLSWWAKASDRH  P                                         LSAGGAFAP+ NAGDAPA++D G K  + E ++K+    ++E  A   S ++ +R+   R+ +K     P LS +KLAD   R LE A ++LDV  L     VC AWRE L GE GR++W RCVRL  GVPE  RA FYLH+LYD+P WV KA     S + +   YQ CL +A+A++ E  AA     IL+               A   FR +  + A A       + P  P   HKWL+EIETDVLRTCP DDA+      EF +       +AA  D                             S SSST+++      G       ++G  + TAP  G D     G                  E V+   G S  I      +  + SA         G G RDKLRRVLRAF VYNRR+SYCQGMNFVAL LLEA  GDDE AFWILAGMC+ L+L
Sbjct:  188 QAVLRERLLIADRLAEAHSDYAKSVSRYQSSIFDNVSGGPP-------------PEVVVLGDRVVGASDAFAEAHGRAEEVLTKRLAERGRCLREAASSLKAAQAGFFVRASRCVSSSVVWESPDDVLSRATGDLQNTT-RSTAEDTRKPPAASHVAKPKAVVVSTDAAFEG-----GKEERDGGAAGSQAKSAVFSTGI-----HD-----RDTVKGKWKKGGDYDGLRNDSSKRRRNSGWFKRLASSFQTNRPRSASEELLEEERMPSPFNDNADEYDSGGDDDKKLCLRSIPRATASSSAKSPKGKLLFGGEDFWDGNSSLRNGNTAELATEAAATSSPDAGSDASATGAVXXXXXXXXXXXXXXXXXXXXXXXXDTDYETGSNTTEGFGSDDAGDLW--DGRRSTLMAPLDRTSFMPNDNGHKSEEEEEWHVPPEXESNGDEPEGGDSCGKG--------AAGSPSGAEEEEGVELMPGAHPEVGVAETSKEEGGASRSGIISPASDVDGTVPPAAENDGAPESARSVKGGRDRVDEERDGGRGGGLVKDSGDSVAEGAKA--EDISSPVPTRRSPYLVHCSPSRA--PPSILPVLPEPGPKEDGVEDPLPPVAIEQRRTPSPL-CKITASPAISDGSSCKESPRAWRLSWWAKASDRHPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXLSAGGAFAPSRNAGDAPAVMDGGEKKASLEEALKS---AATETVADAASERRSRRRWTQRRREK-----PWLSKDKLADPQTRALEAASEYLDVVALAKAVVVCRAWREPLAGEEGRQRWMRCVRLADGVPENRRAMFYLHILYDQPCWVQKAHGSKSSERPRPGVYQECLEKAEADQEETVAAKEMQRILEEEERNGRASPSAGARAAALFRDSGGLRAVAGGCDGDGDTPAPPPRCHKWLEEIETDVLRTCPGDDAAGEDAVNEFDSVLSKNTAAAAASDGGEIGDTGTPPANESSRVRFSVSFSSFGSSNSSSTVKAVANRSSGAVAEDLGSDGRRSSTAPVQGRDSAPTEGE-----------------EVVAGGRGGSGAI------VRNKFSAT--------GGGMRDKLRRVLRAFAVYNRRVSYCQGMNFVALALLEACEGDDENAFWILAGMCENLEL 1273          
BLAST of mRNA_P-canaliculata_contig10306.443.1 vs. uniprot
Match: A0A836C7P9_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7P9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.310e-10
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0
Query: 1030 RDKLRRVLRAFGVYNRRISYCQGMNFVALCLLEASNGDDETAFWILAGMCDRLQLE 1085
            R +LRR+LRAF ++ RR+SYCQGMNFVAL LLEAS  D+E AFW L  + +RL +E
Sbjct: 1014 RGRLRRMLRAFALHARRVSYCQGMNFVALALLEASGEDEEEAFWALVALSERLAME 1069          
BLAST of mRNA_P-canaliculata_contig10306.443.1 vs. uniprot
Match: A0A2D4BZI8_PYTIN (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZI8_PYTIN)

HSP 1 Score: 56.2 bits (134), Expect = 6.400e-5
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query: 1031 DKLRRVLRAFGVYNRRISYCQGMNFVALCLLEASNGDDETAFWILAGMCD 1080
            D++RRVLRA+ +YN R+ YCQGMNF+   L+E ++ D+   FW+  G+ +
Sbjct:   23 DRIRRVLRAYVMYNPRVGYCQGMNFLVRLLMEVTD-DEADCFWLFVGLSE 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10306.443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQU6_ECTSI2.420e-9033.73Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A0A836C7P9_9STRA3.310e-1062.50Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A2D4BZI8_PYTIN6.400e-546.00Rab-GAP TBC domain-containing protein n=1 Tax=Pyth... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 1029..1082
e-value: 1.0E-12
score: 48.2
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 787..1089
score: 11.235
NoneNo IPR availableGENE3D1.10.8.270coord: 1017..1086
e-value: 5.5E-16
score: 60.3
NoneNo IPR availablePANTHERPTHR22957TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINcoord: 607..1078
NoneNo IPR availablePANTHERPTHR22957:SF437TBC1 DOMAIN FAMILY MEMBER 2Acoord: 607..1078
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 784..1084

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10306contigP-canaliculata_contig10306:5226..11210 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10306.443.1mRNA_P-canaliculata_contig10306.443.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10306 5226..11210 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10306.443.1 ID=prot_P-canaliculata_contig10306.443.1|Name=mRNA_P-canaliculata_contig10306.443.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=1090bp
MLPTSQASVRNRSRASDSLASAHSEYARAIARYQALSGDVCSGGGGNGHG
HAGGGRPPPPDVVEAGERVVKASDAFAEAHGTAEEALKGFLEERGRVLRG
SISSFKAAQAGFFVRASRCVSSSVGLEPGDKVNRSPEKICDITQRSLAVD
AAVEKEEAVAVEVGVGVGVGVRSEGKKQKDEDAVGEKVGLVFDGGMLGNG
GHDGDGRNRGKESGGVERSNSLTGGSRAGSKRRRSSGWFARIVFPSLRNS
VSEDEDEDNTRDWDKGRGGNGVLASGASAAAMTMRSALASALPKGEVDEN
RKGKLEGALTPPAVGKKESVVSQRGQVGRVSLGGGSPRRIGYEESVATDV
EESEDYESESDTTEGFGSDDVGRDWWAEGREQGPRDRYSVEPSRGGNGNV
DFHDSVADAARECLGALTESRVSGWKACTTAEATEAAAMPTEARDDTAFD
SVKVAPSDREGEREEGPAEKENESLLKNGGGAGAMCEHEHGDPPRNMAQA
SPSPSPLPPPLTTRTQTGASSVLALGVDVEPCYPTEETPPAPTPRPSKTV
TPVSPLPLVVATDKSQPHDSQPQPRTPQNRPSKRDVSPFASESSNNRESP
RAWRLSWWAKASDRHRPPPPAVTFDGDSSVEEESENSVAEALSLALEAAA
AGGEVAAAALSAGGAFAPALNAGDAPAMVDSGTKTKTEFSVKAESEVSSE
RPARRESNQQGQRQGRHRQGQKKISNDPPLSAEKLADQHERWLEVAVDFL
DVGGLGHVCGVCVAWRERLGGESGREQWTRCVRLPRGVPERLRARFYLHV
LYDKPAWVSKAGSNQYQADSYQACLAQADAEETEARAAVSPLHILDSRFA
LVCFRWTISVAAAAEEPLSPSHKWLDEIETDVLRTCPPDDASEEFHNSAA
TVDAAAALHAAAALDAVGAFDAHDAKGDGTAESGSSSTLRSAITALFGQA
DANGGHNHTAPASGGDVVTPPGTPEAAAAVAVAVAATAIVEAVSNNSGRS
SGISNSSRMIWRRSSAMMIGGVGGGGRGTRDKLRRVLRAFGVYNRRISYC
QGMNFVALCLLEASNGDDETAFWILAGMCDRLQLEVGIK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf