mRNA_P-canaliculata_contig102622.406.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102622.406.1
Unique NamemRNA_P-canaliculata_contig102622.406.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102622.406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102622contigP-canaliculata_contig102622:50..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.8483033-CDS-P-canaliculata_contig102622:49..4541622815599.8483033-CDS-P-canaliculata_contig102622:49..454Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102622 50..454 -
1693494159.0353532-CDS-P-canaliculata_contig102622:49..4541693494159.0353532-CDS-P-canaliculata_contig102622:49..454Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102622 50..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102622.406.1prot_P-canaliculata_contig102622.406.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102622 50..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102622.406.1

>prot_P-canaliculata_contig102622.406.1 ID=prot_P-canaliculata_contig102622.406.1|Name=mRNA_P-canaliculata_contig102622.406.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=135bp
DSTEWRVRVSAPANWNATDKTAYPNILLRLYRRAPDGKMLLTAEAAQKNA
TSISYANATLQLLDSIGFETRAPQLHPATGAYLMDSQSKFAFLRQAFLVK
NGIAYSLTLSAKDSRLRSRHLRAFDRTLRSIEFVE
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mRNA from alignment at P-canaliculata_contig102622:50..454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102622.406.1 ID=mRNA_P-canaliculata_contig102622.406.1|Name=mRNA_P-canaliculata_contig102622.406.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at P-canaliculata_contig102622:50..454- (Pelvetia canaliculata dioecious)
GACTCTACCGAGTGGCGAGTACGGGTATCAGCGCCTGCGAACTGGAACGC
GACCGATAAAACTGCCTACCCCAATATTTTGCTTCGACTTTACCGCCGTG
CTCCCGACGGAAAGATGCTGCTAACTGCCGAAGCTGCACAAAAGAACGCA
ACATCGATTTCGTATGCCAATGCCACGCTCCAGCTCTTGGACTCTATAGG
CTTTGAAACTCGCGCGCCTCAGCTGCATCCAGCGACCGGCGCGTACTTGA
TGGACTCTCAAAGTAAGTTTGCATTCCTGCGCCAAGCATTTCTGGTGAAG
AACGGTATCGCGTACTCCCTTACGTTGTCGGCAAAGGACTCAAGACTTCG
AAGCCGACATCTTCGAGCTTTTGATAGAACCCTGCGGTCGATTGAGTTTG
TGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102622:50..454-

>mRNA_P-canaliculata_contig102622.406.1 ID=mRNA_P-canaliculata_contig102622.406.1|Name=mRNA_P-canaliculata_contig102622.406.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at P-canaliculata_contig102622:50..454- (Pelvetia canaliculata dioecious)
GACTCTACCGAGTGGCGAGTACGGGTATCAGCGCCTGCGAACTGGAACGC
GACCGATAAAACTGCCTACCCCAATATTTTGCTTCGACTTTACCGCCGTG
CTCCCGACGGAAAGATGCTGCTAACTGCCGAAGCTGCACAAAAGAACGCA
ACATCGATTTCGTATGCCAATGCCACGCTCCAGCTCTTGGACTCTATAGG
CTTTGAAACTCGCGCGCCTCAGCTGCATCCAGCGACCGGCGCGTACTTGA
TGGACTCTCAAAGTAAGTTTGCATTCCTGCGCCAAGCATTTCTGGTGAAG
AACGGTATCGCGTACTCCCTTACGTTGTCGGCAAAGGACTCAAGACTTCG
AAGCCGACATCTTCGAGCTTTTGATAGAACCCTGCGGTCGATTGAGTTTG
TGGAGGACTCTACCGAGTGGCGAGTACGGGTATCAGCGCCTGCGAACTGG
AACGCGACCGATAAAACTGCCTACCCCAATATTTTGCTTCGACTTTACCG
CCGTGCTCCCGACGGAAAGATGCTGCTAACTGCCGAAGCTGCACAAAAGA
ACGCAACATCGATTTCGTATGCCAATGCCACGCTCCAGCTCTTGGACTCT
ATAGGCTTTGAAACTCGCGCGCCTCAGCTGCATCCAGCGACCGGCGCGTA
CTTGATGGACTCTCAAAGTAAGTTTGCATTCCTGCGCCAAGCATTTCTGG
TGAAGAACGGTATCGCGTACTCCCTTACGTTGTCGGCAAAGGACTCAAGA
CTTCGAAGCCGACATCTTCGAGCTTTTGATAGAACCCTGCGGTCGATTGA
GTTTGTGGAG
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