mRNA_P-canaliculata_contig102401.382.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102401.382.1
Unique NamemRNA_P-canaliculata_contig102401.382.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI00167B2CBA (hypothetical protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167B2CBA)

HSP 1 Score: 382 bits (981), Expect = 5.720e-129
Identity = 185/270 (68.52%), Postives = 220/270 (81.48%), Query Frame = 1
Query:    1 YDDHRETVMSTAPPDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAEDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFKSRF 810
            +D +R  ++  + P ++A+LT+ N PTASRGDHL+RYR F+RHS+KRR  SA K I+FSIFEM GSDIADLKIPFVKP RS KRVT E +  LR LL+PGDVFVTRHDDAMSNVFLPGFWPHSALWLG  D ++LEAKKDGVLFREL +TLQVDA  VIRP+L  ++I +AL RA+ H GKLYDF+FDFRT+DRLVCTEV+YRAYHGVGP++FNLI++AGRHCL  E LLNQG+GQ WF+VVA+YG+  + L  G EAK  L  SF S F
Sbjct:  181 FDRNRAEILKKSDPYIQAVLTEQNLPTASRGDHLKRYRRFLRHSLKRRQNSALKNIVFSIFEMAGSDIADLKIPFVKPGRSLKRVTPEVIDALRPLLRPGDVFVTRHDDAMSNVFLPGFWPHSALWLGEPDLEVLEAKKDGVLFRELNETLQVDAFTVIRPRLPADEIASALTRAQKHAGKLYDFVFDFRTSDRLVCTEVVYRAYHGVGPINFNLIMEAGRHCLSAEALLNQGVGQEWFDVVAIYGVEDDQLHTGPEAKEMLSNSFDSAF 450          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI000401B43E (hypothetical protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000401B43E)

HSP 1 Score: 318 bits (816), Expect = 8.030e-104
Identity = 165/296 (55.74%), Postives = 204/296 (68.92%), Query Frame = 1
Query:    1 YDDHRETVM----STAPPDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLG---------------------AEDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLL-GEEAKTRLRGSFKSRF 810
            +D++R  +M    S A   +  ILT LN PTASRGDHLRRYR FV  S++RR +SA +  LF++FE TGSDIA+LKIPFVK   +PKRVT + + TL+  L PGDVF+TRHDDAMSN+FLPG+WPH AL++G                     AED +ILEAKKDGVL R +E+TLQVD+ +V+RP+L   DI  AL++  SH GKLYDFIF+F T+DRLVCTEVIYRAYHGVGP+ F L  QAGR CL  E+ LNQ I   WF++V LYG+GG N     E  + RL  +F S F
Sbjct:  160 FDENRSVIMAALESEALSPIADILTTLNLPTASRGDHLRRYRRFVNFSLRRRSISASRNTLFALFEATGSDIAELKIPFVKNIGAPKRVTPDVIETLKSQLNPGDVFITRHDDAMSNLFLPGYWPHGALYIGSPETRNERGIEDVSDGYKHSAAEDINILEAKKDGVLLRPIEETLQVDSFVVLRPKLSEADINQALSKGLSHAGKLYDFIFNFATSDRLVCTEVIYRAYHGVGPISFELSTQAGRKCLSAEDFLNQAIANDWFKLVVLYGVGGQNTFEPAETQRERLAATFASTF 455          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI000374D08E (hypothetical protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000374D08E)

HSP 1 Score: 291 bits (745), Expect = 2.850e-93
Identity = 150/295 (50.85%), Postives = 194/295 (65.76%), Query Frame = 1
Query:    1 YDDHRETVMSTAPPD----VEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAE---------------------DADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFKSRF 810
            +D +RE VM+         V+ IL  LN P ASRGDHLRRY  FV  S++RR +SA + ++F++FE TGSDIA+LKIP VK   + KRVT + L  ++  L+PGD+F+TRHDDAMSN+FLPGFWPH A ++G                       D  ILEAKKDGVL R L +TL VD+ +V+RP L    I+TA+    SH GKLYDFIFDF T+DRLVCTEVIYRA+HGVG + F+L+ + GR CLP E+++NQ I  GWF  V ++G+  N L +G +A   LR SF + F
Sbjct:  158 FDANREAVMAAVSQTDFAVVQEILESLNLPGASRGDHLRRYHRFVNFSLRRRSVSASRNVMFALFEGTGSDIAELKIPLVKNFGARKRVTPDILQAIQDTLRPGDIFITRHDDAMSNLFLPGFWPHGAFYIGTSEQRASRGIADVSDGAKHSGQGDIVILEAKKDGVLLRPLVETLAVDSFVVLRPNLTEAQIDTAITNGLSHAGKLYDFIFDFATSDRLVCTEVIYRAFHGVGDIRFDLVEKTGRKCLPAEDVMNQAISSGWFTPVLIFGVNNNRLTIGTKATDVLRHSFNAVF 452          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A350AQF3_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A350AQF3_9BACT)

HSP 1 Score: 258 bits (658), Expect = 2.680e-80
Identity = 129/257 (50.19%), Postives = 165/257 (64.20%), Query Frame = 1
Query:   88 RGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGA----------------EDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFKSRF 810
            R D L+R   +  HS+ RR+ SA++K +FS+F+++G  IA+LK PFVKP  +PKRV       L   L+PGDV VTRHDDA+SN+FLPG+WPH+A ++G+                ED   +E+K+DGVL R  +DTLQVDA +V+RP      I  A+ R  SH GKLYDFIFDF   DRL CTE++YR+YHGVGPV   L   AGR CL  E+L+NQ +  GWFE V +YG+ GN    G  AK  LR SF S F
Sbjct:  187 RDDLLKRRLSYRMHSLLRRNSSAYRKTMFSLFQLSGCSIAELKQPFVKPAGAPKRVDASVRERLEAFLKPGDVIVTRHDDALSNLFLPGYWPHAAFYIGSNGQRGTMGVITDDSVQEDVRFVESKRDGVLLRPADDTLQVDAFVVLRPTFADTQISEAIGRGMSHAGKLYDFIFDFTAADRLACTELVYRSYHGVGPVQLKLEPHAGRVCLSAEDLINQTVTNGWFEPVLVYGLVGNEWTTGAAAKELLRASFASTF 443          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI001A3A4895 (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium R5-34 TaxID=2800420 RepID=UPI001A3A4895)

HSP 1 Score: 252 bits (643), Expect = 6.990e-78
Identity = 137/279 (49.10%), Postives = 183/279 (65.59%), Query Frame = 1
Query:    1 YDDHRETVMS-TAPPDVEAILT--KLNTPTAS--RGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFV-----KPPRSP---KRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAED----------AD---------ILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGI 741
            Y+ HRE + +  A P +  ++   K+  P     + D+L+R   +  HS KRRH+S +KK++F +F+++GS +A+L+ PF       P RSP   KRVT E ++T+  LL+PGDVFVTRHDDA+SN+FLPGFWPH+AL++G+ +          AD          LEAKKDGVLFR  EDTLQVDA +V+RP+L   +   AL RA SH GKLYDF+FDFR  DRL CTEV+YR YHG+GPV F L   +GR CL  E+L+ Q +G G FE +A YG+
Sbjct:  171 YEVHREDIAAHEADPVIGELVAVLKIEEPFLQYRKRDYLKRKWDYRLHSFKRRHVSGYKKVMFHLFKLSGSAVAELRQPFGVLAADAPQRSPGQLKRVTAEVMATISALLRPGDVFVTRHDDALSNLFLPGFWPHAALYIGSAEERGLLGVPTPADDSRCLELVRFLEAKKDGVLFRAFEDTLQVDAFMVLRPKLAQAECAEALTRAMSHEGKLYDFVFDFRKADRLACTEVVYRGYHGIGPVRFELRQHSGRSCLSAEDLIEQALGSGCFEKIADYGV 449          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A2E8MBK6_9BACT (Uncharacterized protein n=2 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A2E8MBK6_9BACT)

HSP 1 Score: 249 bits (637), Expect = 3.490e-77
Identity = 136/269 (50.56%), Postives = 181/269 (67.29%), Query Frame = 1
Query:   58 LTKLNTPTASRGDHLR-RYRGFVR-------HSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLG-----AEDA--------DILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFK 801
            L+K+     S  +HL  R R F+        HS+ RRH S + K++F +F ++GS +A+L+ PF K  R  KRV  + +  ++ LL+PGDV VTRHDDAMSN+FLPGFWPH+AL+LG      +DA        DILEAKKDGVLFR+L +TL VD+ +VIRP L  +D+  AL RA SH GKLYDFIFDFR T+RLVCTEV+YRAYH VG ++F L  ++GR  L  E+LL+Q I    F+V+A++G+  + LL   EA+T LR S +
Sbjct:  168 LSKVAAWLTSEEEHLEHRRRAFLERRVAYRIHSLLRRHTSGYTKVMFHLFRLSGSAVAELRQPFKKNHRVGKRVKPDIIRKIQPLLKPGDVIVTRHDDAMSNLFLPGFWPHAALFLGDSKTRKQDALPEHPMEYDILEAKKDGVLFRQLSETLSVDSFVVIRPNLSNDDLAEALTRACSHEGKLYDFIFDFRKTERLVCTEVVYRAYHSVGEIEFQLTKRSGRLALSAEDLLDQAITNNNFKVIAIFGVQNSGLLYDGEARTCLRESLQ 436          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: UPI00190797CC (Uncharacterized protein n=2 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI00190797CC)

HSP 1 Score: 248 bits (634), Expect = 1.130e-76
Identity = 132/262 (50.38%), Postives = 170/262 (64.89%), Query Frame = 1
Query:   40 PDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAEDAD----------ILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGS 795
            P VE +L +       R D LRR   +  +S  RRH SAWK+++F +F+ +GS IA+L+ P +KP  +PKR+T E  S L   ++PGDVFVTRHDDAMSN+FLPGFWPH+A +LG  D             LEAKKDGVLFRE+ +TL VD+ +V+RP L+  +    L RA SH GK YDF+FDFRT D L CTEV+YR  HG+GP+ F L    GR CLP EE+++Q +  G FEVVA  G+GG  +L G  A+    GS
Sbjct:  181 PVVELLLAEEMWIEHRRRDLLRRAVSYRWYSFLRRHRSAWKQVMFGLFKASGSAIAELRQPGIKPAGAPKRMTDEMRSMLLARVRPGDVFVTRHDDAMSNLFLPGFWPHAAFYLGEGDGSSVWGKSGGRWFLEAKKDGVLFREIAETLSVDSCVVLRPPLNDQERMEGLQRATSHAGKPYDFLFDFRTADCLACTEVVYRGLHGIGPIRFTLREVGGRLCLPAEEMISQALECG-FEVVATAGLGGAKVLFGTAAEIAFHGS 441          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A2E3HDU1_9BACT (Uncharacterized protein n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E3HDU1_9BACT)

HSP 1 Score: 249 bits (635), Expect = 1.600e-76
Identity = 128/281 (45.55%), Postives = 182/281 (64.77%), Query Frame = 1
Query:    1 YDDHRETV---MSTAPPDVEAILTKLNTP--TASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAE--------------DADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRL 786
            Y+ HRE +   +  A  D+ A       P    SR + ++R   +  H+ K R ++ +K+++F +F ++GS IAD+K PF +      RVT E   T   +LQPGD  VTRHDDAMSN+FLPGFWPH++L LG                +A++LEAKKDGVLFR L++TL VDA +V+RP+L+ + ++ AL RA SH GKLYDF+FDFR  D+LVC+EV+YRAYHGVGPV F L+ ++G+  L  E+LL Q +  G+FE++  YG+G N +L G  A+ ++
Sbjct:  163 YNTHREEIAEALRKADMDLVAEWLHAEEPFFEKSRREFIKRKIRYRLHAFKLRQIAGYKRVMFHLFRLSGSAIADMKQPFTRRAHEEHRVTPELRCTTEKMLQPGDFLVTRHDDAMSNLFLPGFWPHASLSLGNSAQRSDLDLPPIHHPEANVLEAKKDGVLFRHLDETLSVDAFVVLRPRLENHFLKEALTRAISHEGKLYDFVFDFRKADKLVCSEVVYRAYHGVGPVSFELVKRSGKLVLSAEDLLRQALASGFFEIILCYGVGDNQMLQGRAAEAKI 443          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A7C5LS04_9PROT (Uncharacterized protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5LS04_9PROT)

HSP 1 Score: 244 bits (622), Expect = 1.200e-74
Identity = 136/289 (47.06%), Postives = 174/289 (60.21%), Query Frame = 1
Query:    1 YDDHRETVMSTAPPDVEAILTKLNTP---TASRGDHLRRYRGFVRHSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGAE--------------------DADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSF 798
            Y D     + T P    A + ++  P   T  R  H +R   F    ++RR      + +F +FE  GSDIA+LK P VKP  +PKRV  E  + L  L  PGDVFVTRHDDA+SNVFLPGFWPH+AL++G +                      + LE+KKDGVLFR  +DTLQVD  +++RP+L    ++TAL RA SH GKLYDF+FDF T+DRLVCTE+IYR YH    + F L  +AGR CL  E+ LNQ +G  WFEVVA++G+GG+ L  GE A   L  SF
Sbjct:  173 YKDEIYAALDTPPYSEIADMLRVEEPYFQTRLRA-HFKRKARFNLFRLRRRRQVVVHQAIFFLFEAAGSDIAELKQPLVKPRGAPKRVNDEVRAQLLELALPGDVFVTRHDDALSNVFLPGFWPHAALYIGTDMDRAALGVAKSRPEYQSEAGPVEFLESKKDGVLFRPAKDTLQVDNCVILRPKLSKPVVQTALNRALSHAGKLYDFVFDFTTSDRLVCTELIYRTYHDPKNMPFILSEKAGRLCLSAEDFLNQALGHDWFEVVAVFGVGGDTLYQGEAALQTLLKSF 460          
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Match: A0A3D4EXE3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3D4EXE3_9BACT)

HSP 1 Score: 236 bits (601), Expect = 3.530e-74
Identity = 113/239 (47.28%), Postives = 163/239 (68.20%), Query Frame = 1
Query:  127 HSVKRRHLSAWKKILFSIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHDDAMSNVFLPGFWPHSALWLGA--------------EDADILEAKKDGVLFRELEDTLQVDALIVIRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGVGPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEAKTRLRGSFK 801
            +S+ RR  S + K++F +F +TGS IAD+K PFVK     KRVT E +  +R  LQPGD+F+TRHDDAMSN+FLPGFWPH+AL++G               + A +LEAKKDGV  R++E+TL VD+ +++RP++   +++ AL +A +H GK YDF FDFR  +RL CTEVIYRA+HG+G  D  LI Q+G   LP EEL++QG+ +G  +V  ++G+ G+ + +G +A+  L  + K
Sbjct:   14 YSLSRRTSSGYTKVMFHLFRLTGSAIADMKQPFVKSSGKGKRVTKEIIEEIRSKLQPGDIFITRHDDAMSNLFLPGFWPHAALYMGPLSDRDDLGLLAYGDQSAHVLEAKKDGVKLRQIEETLSVDSFVILRPKVSAAELQQALQKAITHEGKHYDFTFDFRKAERLCCTEVIYRAFHGIGRWDLRLIKQSGHLALPAEELIHQGLQKGLIDVAMIFGVNGDTVEIGPKARDLLLSTLK 252          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102401.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167B2CBA5.720e-12968.52hypothetical protein n=1 Tax=Litorimonas cladophor... [more]
UPI000401B43E8.030e-10455.74hypothetical protein n=1 Tax=Hellea balneolensis T... [more]
UPI000374D08E2.850e-9350.85hypothetical protein n=1 Tax=Robiginitomaculum ant... [more]
A0A350AQF3_9BACT2.680e-8050.19Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]
UPI001A3A48956.990e-7849.10Uncharacterized protein n=1 Tax=Verrucomicrobiacea... [more]
A0A2E8MBK6_9BACT3.490e-7750.56Uncharacterized protein n=2 Tax=Verrucomicrobiales... [more]
UPI00190797CC1.130e-7650.38Uncharacterized protein n=2 Tax=Luteolibacter pohn... [more]
A0A2E3HDU1_9BACT1.600e-7645.55Uncharacterized protein n=1 Tax=Roseibacillus sp. ... [more]
A0A7C5LS04_9PROT1.200e-7447.06Uncharacterized protein n=1 Tax=Hellea balneolensi... [more]
A0A3D4EXE3_9BACT3.530e-7447.28Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102401contigP-canaliculata_contig102401:2..814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score319.3
Seed ortholog evalue1.7e-84
Seed eggNOG ortholog1121948.AUAC01000004_gene198
EggNOG free text desc.Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
EggNOG OGs1R3R2@1224,2U8BD@28211,43Z7K@69657,COG3863@1,COG3863@2
COG Functional cat.S
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size813
Cds size789
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.089355-UTR-P-canaliculata_contig102401:1..251622815598.089355-UTR-P-canaliculata_contig102401:1..25Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102401 2..25 +
1693494158.04829-UTR-P-canaliculata_contig102401:1..251693494158.04829-UTR-P-canaliculata_contig102401:1..25Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102401 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.1050708-CDS-P-canaliculata_contig102401:25..8141622815598.1050708-CDS-P-canaliculata_contig102401:25..814Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102401 26..814 +
1693494158.06253-CDS-P-canaliculata_contig102401:25..8141693494158.06253-CDS-P-canaliculata_contig102401:25..814Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102401 26..814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102401.382.1prot_P-canaliculata_contig102401.382.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102401 26..814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102401.382.1

>prot_P-canaliculata_contig102401.382.1 ID=prot_P-canaliculata_contig102401.382.1|Name=mRNA_P-canaliculata_contig102401.382.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=263bp
MSTAPPDVEAILTKLNTPTASRGDHLRRYRGFVRHSVKRRHLSAWKKILF
SIFEMTGSDIADLKIPFVKPPRSPKRVTGETLSTLRGLLQPGDVFVTRHD
DAMSNVFLPGFWPHSALWLGAEDADILEAKKDGVLFRELEDTLQVDALIV
IRPQLDPNDIETALARARSHVGKLYDFIFDFRTTDRLVCTEVIYRAYHGV
GPVDFNLIVQAGRHCLPVEELLNQGIGQGWFEVVALYGIGGNNLLLGEEA
KTRLRGSFKSRF*
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mRNA from alignment at P-canaliculata_contig102401:2..814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102401.382.1 ID=mRNA_P-canaliculata_contig102401.382.1|Name=mRNA_P-canaliculata_contig102401.382.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at P-canaliculata_contig102401:2..814+ (Pelvetia canaliculata dioecious)
TATGATGACCACAGGGAGACGGTGATGTCGACAGCTCCGCCGGACGTTGA AGCCATTCTCACCAAGTTAAATACGCCGACAGCGTCCAGAGGCGACCATC TGCGCCGATATCGCGGCTTTGTCCGGCACTCTGTGAAACGCCGGCACCTG TCAGCTTGGAAAAAAATCTTGTTCTCGATTTTTGAAATGACCGGCTCTGA TATCGCAGATTTGAAAATACCGTTCGTCAAACCGCCAAGATCACCCAAGC GCGTCACGGGCGAGACCTTATCGACCTTACGAGGCCTCTTGCAGCCCGGC GACGTTTTCGTCACCCGTCACGATGATGCGATGAGTAATGTTTTCCTCCC AGGCTTCTGGCCCCATTCCGCGCTTTGGTTGGGAGCCGAAGATGCAGATA TATTGGAGGCCAAAAAGGACGGTGTCCTCTTTCGTGAACTTGAGGACACG CTGCAGGTTGACGCGTTGATCGTCATTCGCCCGCAGCTCGACCCAAACGA TATCGAAACGGCCCTGGCCCGCGCGCGCAGCCATGTCGGCAAACTCTATG ATTTCATTTTCGATTTCCGCACGACCGACCGTTTGGTCTGCACGGAAGTC ATCTACCGCGCCTATCACGGCGTCGGTCCGGTTGATTTTAATTTGATTGT GCAAGCAGGCCGTCATTGTCTGCCCGTTGAAGAGCTTCTTAATCAAGGCA TTGGTCAGGGCTGGTTCGAGGTCGTCGCGCTATACGGCATCGGCGGCAAT AATTTGCTGTTGGGAGAGGAAGCGAAGACCCGGCTGCGCGGTAGTTTCAA AAGCCGCTTCTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102401:2..814+

>mRNA_P-canaliculata_contig102401.382.1 ID=mRNA_P-canaliculata_contig102401.382.1|Name=mRNA_P-canaliculata_contig102401.382.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at P-canaliculata_contig102401:2..814+ (Pelvetia canaliculata dioecious)
ATGTCGACAGCTCCGCCGGACGTTGAAGCCATTCTCACCAAGTTAAATAC
GCCGACAGCGTCCAGAGGCGACCATCTGCGCCGATATCGCGGCTTTGTCC
GGCACTCTGTGAAACGCCGGCACCTGTCAGCTTGGAAAAAAATCTTGTTC
TCGATTTTTGAAATGACCGGCTCTGATATCGCAGATTTGAAAATACCGTT
CGTCAAACCGCCAAGATCACCCAAGCGCGTCACGGGCGAGACCTTATCGA
CCTTACGAGGCCTCTTGCAGCCCGGCGACGTTTTCGTCACCCGTCACGAT
GATGCGATGAGTAATGTTTTCCTCCCAGGCTTCTGGCCCCATTCCGCGCT
TTGGTTGGGAGCCGAAGATGCAGATATATTGGAGGCCAAAAAGGACGGTG
TCCTCTTTCGTGAACTTGAGGACACGCTGCAGGTTGACGCGTTGATCGTC
ATTCGCCCGCAGCTCGACCCAAACGATATCGAAACGGCCCTGGCCCGCGC
GCGCAGCCATGTCGGCAAACTCTATGATTTCATTTTCGATTTCCGCACGA
CCGACCGTTTGGTCTGCACGGAAGTCATCTACCGCGCCTATCACGGCGTC
GGTCCGGTTGATTTTAATTTGATTGTGCAAGCAGGCCGTCATTGTCTGCC
CGTTGAAGAGCTTCTTAATCAAGGCATTGGTCAGGGCTGGTTCGAGGTCG
TCGCGCTATACGGCATCGGCGGCAATAATTTGCTGTTGGGAGAGGAAGCG
AAGACCCGGCTGCGCGGTAGTTTCAAAAGCCGCTTCTAGATGTCGACAGC
TCCGCCGGACGTTGAAGCCATTCTCACCAAGTTAAATACGCCGACAGCGT
CCAGAGGCGACCATCTGCGCCGATATCGCGGCTTTGTCCGGCACTCTGTG
AAACGCCGGCACCTGTCAGCTTGGAAAAAAATCTTGTTCTCGATTTTTGA
AATGACCGGCTCTGATATCGCAGATTTGAAAATACCGTTCGTCAAACCGC
CAAGATCACCCAAGCGCGTCACGGGCGAGACCTTATCGACCTTACGAGGC
CTCTTGCAGCCCGGCGACGTTTTCGTCACCCGTCACGATGATGCGATGAG
TAATGTTTTCCTCCCAGGCTTCTGGCCCCATTCCGCGCTTTGGTTGGGAG
CCGAAGATGCAGATATATTGGAGGCCAAAAAGGACGGTGTCCTCTTTCGT
GAACTTGAGGACACGCTGCAGGTTGACGCGTTGATCGTCATTCGCCCGCA
GCTCGACCCAAACGATATCGAAACGGCCCTGGCCCGCGCGCGCAGCCATG
TCGGCAAACTCTATGATTTCATTTTCGATTTCCGCACGACCGACCGTTTG
GTCTGCACGGAAGTCATCTACCGCGCCTATCACGGCGTCGGTCCGGTTGA
TTTTAATTTGATTGTGCAAGCAGGCCGTCATTGTCTGCCCGTTGAAGAGC
TTCTTAATCAAGGCATTGGTCAGGGCTGGTTCGAGGTCGTCGCGCTATAC
GGCATCGGCGGCAATAATTTGCTGTTGGGAGAGGAAGCGAAGACCCGGCT
GCGCGGTAGTTTCAAAAGCCGCTTCTAG
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