mRNA_P-canaliculata_contig10231.368.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10231.368.1
Unique NamemRNA_P-canaliculata_contig10231.368.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Match: D7G5E1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.010e-12
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 RFSNFTFLASICAAADNGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEAFLRQAMFAMPTPALLIQFVTRN 216
            RFS F  +A+ C   D     AW  VVRA+P  RCL   YLA+KC LLE FL+Q +FAMPTPALLI FV++ 
Sbjct:  329 RFSKFKTIAA-CTQGDPDAAAAWRRVVRAKPHYRCLNPDYLAHKCNLLETFLQQVLFAMPTPALLIHFVSQK 399
[Close]
BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Match: D7FHG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG1_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 7.280e-6
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 RFSNFTFLASICAAAD-NGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEAFLRQAMFAMPTPALLIQFV 207
            R+S+F  LA     +D     +AW H+ + Q   RCL   YL  KC LLE FL Q +F +PTP+LL+ FV
Sbjct:  234 RYSDFKLLAEYAKISDLRDTVKAWAHIQQTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFV 303
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5E1_ECTSI2.010e-1255.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHG1_ECTSI7.280e-644.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10231contigP-canaliculata_contig10231:272..3991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size768
Cds size261
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10231.368.1prot_P-canaliculata_contig10231.368.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10231 272..3325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0586214-CDS-P-canaliculata_contig10231:271..4211622815597.0586214-CDS-P-canaliculata_contig10231:271..421Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10231 272..421 +
1693494157.4840066-CDS-P-canaliculata_contig10231:271..4211693494157.4840066-CDS-P-canaliculata_contig10231:271..421Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10231 272..421 +
1622815597.071889-CDS-P-canaliculata_contig10231:3214..33251622815597.071889-CDS-P-canaliculata_contig10231:3214..3325Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10231 3215..3325 +
1693494157.49377-CDS-P-canaliculata_contig10231:3214..33251693494157.49377-CDS-P-canaliculata_contig10231:3214..3325Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10231 3215..3325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0873957-UTR-P-canaliculata_contig10231:3325..35811622815597.0873957-UTR-P-canaliculata_contig10231:3325..3581Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10231 3326..3581 +
1693494157.5018682-UTR-P-canaliculata_contig10231:3325..35811693494157.5018682-UTR-P-canaliculata_contig10231:3325..3581Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10231 3326..3581 +
1622815597.100246-UTR-P-canaliculata_contig10231:3740..39911622815597.100246-UTR-P-canaliculata_contig10231:3740..3991Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10231 3741..3991 +
1693494157.5106478-UTR-P-canaliculata_contig10231:3740..39911693494157.5106478-UTR-P-canaliculata_contig10231:3740..3991Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10231 3741..3991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10231.368.1

>prot_P-canaliculata_contig10231.368.1 ID=prot_P-canaliculata_contig10231.368.1|Name=mRNA_P-canaliculata_contig10231.368.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=87bp
RFSNFTFLASICAAADNGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEA
FLRQAMFAMPTPALLIQFVTRNYSYGSLVWNRVLPC*
back to top

mRNA from alignment at P-canaliculata_contig10231:272..3991+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10231.368.1 ID=mRNA_P-canaliculata_contig10231.368.1|Name=mRNA_P-canaliculata_contig10231.368.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3720bp|location=Sequence derived from alignment at P-canaliculata_contig10231:272..3991+ (Pelvetia canaliculata dioecious)
CGTTTTTCAAACTTTACGTTCTTGGCTTCTATCTGTGCGGCGGCCGACAA
TGGTTGCAACGAGGCTTGGGGCCACGTAGTGAGGGCCCAGCCGGCCCGCA
GGTGCCTCACCCGAGCGTACCTGGCGTACAAGTGCAGATTGCTAGAGGCG
GTGAGTGCTTCAAGAGGTGGAGTGATGTCAGGTTTGCAGCAGACAACTAA
AGGAAGGACACAACGACTCTGACTTATTGTCGCATTGAGATTCTCCCAAG
GGAGGATCAATTGTACTTATTACGAAAACGTCTGATCAGACGCGACAATT
GTGTGTGTGTGTGTGTATGTGAGAGAGAGAAAGAGTTTATGCACGGGGTA
CTACATTTACTCTCCTCTCAAGGTCGCATTCGACAAATGATTGGCAGATT
GCTGTATATGCAACCTGCCAAAAAAAACCTACTGCCCAAATCCCGTCCTT
CCCCACGAAACCGACGTGAGATGTGGTGCTACTCTTCCAAACGGAAGGGC
TCGGAAAAGGTTTTATTATGGAGGATCAATTGCTACCTTGTGTTTTTCCG
TATCCCTTGGTCAAAGCGAAAAACACTGATGGGTACTTAAATGTGACCGA
GGGCTCTTTCCCGCGAACGTTCACGCACTCGGATGATTAACACGCGCCAG
ATCACACACACTCCAAGGTACGTTCTCCTCGCACACAGAGCACAGCAGCC
TTGCCCCCCATGACGGGCCTGGGTAGTGTCTAAGAGCAGGCCTTCAACAA
TACAATAGCGACGACACCTGACGCCTGAGGCAAAAACTTTAGCCGACTAC
ACCCCACTCGATCGAACGAGCTGATCGAGCCGGCTAAGTCGCCCAATGTA
AAAAAGTTATACAAAAAAAGTGCGAGTGTCGTTGCAGTAATGCTGTCTTC
AGCGGAGAGAGAGGACGACAACGGGTTGTAACAGCTGTCCCCTTTACCGT
GCTTGTAGTTTGTGACCATGTTTTTTCGGGTGACAACAGCAGCAGCAGGC
ATATGATGTTAATCTAGTACGGTCGGGTCGCGTAAATTAACGAGCCAACA
GTAGACACGACCGCCGGCGTCATAGATTCCGTCGAGTACGTTAAAATCTC
AGATAACTGGGCTAACAAGAATGTCATGGTACCAATGCCTATGACAAATG
GATACTGTGATACACGCGAACCAGTGAATATAGCACACCATGTAAGAAAG
GGTGCCCTGTAACTTTTCTTCTGGAATACATTCTCTCCAAGAAGCGTGTT
ATTTAAGCATACCATGTAAGTCGAACAAGGGCCACTGAAGCGCCGAACAA
GTTTACCTAACCCCAAACTATGTCGCAATCTTTTGCTAGCTGCGTTTTGA
GCAATCTTTCCCCAGTCTTCACACTCCTTGCAAGCTCTAGATGTCTCCTG
CTGCGGCGTCCACCTTTAGCCTTTCGGGGTCCACCCCTAGTCTAGTCTAG
TCTAGCGGCGTCTATTTCTACAATATAATGATGGTTGTCATCCGAGCGAT
ATGTTCCATGCGGTCTTCTTGGTCCCGGGCGAAGCACTGCGGAGTTCCCA
GTCAGCTCTCCGGAGTCCTAAACACGAAACATGATATTCAATGTCCCCTC
CCCCCGCTCTCCAAGGAAAAAGAAGTTTATACCAAGTACACTTAAATATA
ATATTTGTGTTTTACGAAATATGTCATTCGAAATCTCGTTTAGCACACCC
GAAGGCCCCTCAATACATAACATTCCCCTTCTCCTTCGCAATTGTCGTAA
ATGACGACCCGACCGTGACCGCGTCGGCCTATACTTCGTGAACCGTCCCC
CCCCTCTCTCCCCCTCCCTCTGTTCTCACTGCGAAAAGAAAATTTTTCTA
TGACATGCGCGAAAAGAACATTTTTCTTGTCCCGTGCGGATACCTACGAA
GTTTTCCAAAATAGGAGCTACAGCCGTCCAGAATGTGTGCATTTTTGCCA
TCACTACGGGGAATCCGTCGTGCGTATGCCAGGATGAAGGCAAACATATT
AGCACGACCATACAGCCAGGAAGCGAGCTTTGGTATTTGTATCCCCGTCA
ATAAACTCTTGCGGACTGAGCGGCGGCACAGGTTAAATAACTCTTCTACT
CACGATCAGCACAACTCCTCCTTCTCGGCCTACCATACCATAAAATTAAA
ACCATCTCGTCGCTACGGTGGTGGCATATGTACGCCACCAACCTCGACAA
CTCTGTCCGGTTTGTCAAGTATTCTGGCGTCCAATGACGACGCACCCAAT
ACAGTGGACAGTTGTAGAACTGCATCTCCAACGCCAGCATGCGTGTTGCA
AGCTGGCCAATCAAGCTGACTCCGTCCCAGTGGTGACGTTGTTATAGGTA
TACTCTTAATAACTTGTTCGTCTTTCATGTTACACCTATCCTTACAGTTC
ACAGCCCTCCCCGGGGCTGGAGAGAAGGAAATGCTTTCTATTTTAGTCCG
ATTACGTTGTACTTGGTACTGCGCCAATTCGACCTTCTTCTGGTCCTTCT
GGTCCTTCCGGTCAACTGGGAAGATAAGGAATGAAAATAATCTACATACC
GTACTAAAACGTTTCCACGTTTTGGGGAAGATTGTCTGTGTGTTTCTCTT
TCTTGTTTTCTATTGTTTCTTCTTCATTCTTGGGAAGTACTTCAACCAAC
ATGCTGATTCTGGAAGAAGTAAAGATGTTTCCTGTATTTGAAGCATGCGG
GAGGGGGGAGTTGCACGAGAAAGCATTGCATTTTCCCCCTCGAAATGCTT
CTTCGATAACATAAGTAGTGACAGCCAATCCTTTCAAGAGAAGTAGAAGG
GCAGCACTAAGACTCTCCTTTTGTTACGATCGCTTGCGCCGGTATGAGTA
CTCTCTCTTCAGATAACCTTATTAATAATTGGCGTTGTCCTTCTTTGGCT
CTCCTTCTTTGGCCGGCCCTCGCTGTTCTTTCGGTTTCTGCAGTTCTTAC
GACAGGCCATGTTCGCCATGCCCACGCCCGCGCTTCTCATCCAGTTCGTG
ACACGTAATTACAGCTACGGATCGTTGGTTTGGAATAGGGTATTGCCGTG
TTGAGGTGATGACATCACGGCACATGGGTCACAATCCGGTCTTTGCTTAT
CACGCCGTTCATGTATTTCGAGAACGAGCGGGCCGACTCTAAAATTCGCC
GTATTTCATCATGTCGCTTTCGTCTGTCGAACGGTGATCTTTTTGTATTT
TTTCTCCTAGAGAACATTGTTTACTAGGAGCTCTTGTAACCACGCGAATA
AAAGGTGTAGGTGGCAGACGTGATCGATTTCGACGATTTCGCCTGACTTT
TGAGCAGACCGCACGGAAGAATGTTCGGGGCTTTGTCATTCAGGCTCTTA
CCAGAGCTCTGGAGAGTTGTGTCTCTGGGTATTTCCTTGGGGTTGATTCG
ATTTCAACCTTTCTCAATTGCATTGGCCAAGGTAGCATCCCTACCCGAAA
TAGATAGATAACCGAAAAGTTCTATATCTATTGAGGCGTTTGAATGTGAA
AGTAGCGTGATTTTTATTTTTGCTGCTGCTGTGTTGACGTTGAAAAATAA
GAGCGTTTCTCACCCTTCGCAGGAGCTCTGTATTGGCACAAACTACCATC
TGTTCGATTTTTAGATTTCAGATAAAAAATACTCATTAACTTGTGCTTAA
AGATATCTGCATTCATTTGTATACAGGCGGCGGAACTCGTTGTATGGGTT
TGACTTGGTCCATATCCCAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10231:272..3991+

>mRNA_P-canaliculata_contig10231.368.1 ID=mRNA_P-canaliculata_contig10231.368.1|Name=mRNA_P-canaliculata_contig10231.368.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at P-canaliculata_contig10231:272..3991+ (Pelvetia canaliculata dioecious)
CGTTTTTCAAACTTTACGTTCTTGGCTTCTATCTGTGCGGCGGCCGACAA
TGGTTGCAACGAGGCTTGGGGCCACGTAGTGAGGGCCCAGCCGGCCCGCA
GGTGCCTCACCCGAGCGTACCTGGCGTACAAGTGCAGATTGCTAGAGGCG
CGTTTTTCAAACTTTACGTTCTTGGCTTCTATCTGTGCGGCGGCCGACAA
TGGTTGCAACGAGGCTTGGGGCCACGTAGTGAGGGCCCAGCCGGCCCGCA
GGTGCCTCACCCGAGCGTACCTGGCGTACAAGTGCAGATTGCTAGAGGCG
TTCTTACGACAGGCCATGTTCGCCATGCCCACGCCCGCGCTTCTCATCCA
GTTCGTGACACGTAATTACAGCTACGGATCGTTGGTTTGGAATAGGGTAT
TGCCGTGTTGATTCTTACGACAGGCCATGTTCGCCATGCCCACGCCCGCG
CTTCTCATCCAGTTCGTGACACGTAATTACAGCTACGGATCGTTGGTTTG
GAATAGGGTATTGCCGTGTTGA
back to top