prot_P-canaliculata_contig102300.365.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig102300.365.1
Unique Nameprot_P-canaliculata_contig102300.365.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length44
Homology
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A357IBD8_9GAMM (Cold shock domain protein CspD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A357IBD8_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 2.130e-9
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 42
            MS +S  TVKWF+  K YGF VN  GEDVF+HYRSIQ  G +
Sbjct:    1 MSERSNGTVKWFDNAKGYGFIVNPDGEDVFVHYRSIQGDGYK 42          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A352KLI8_9GAMM (Cold-shock protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A352KLI8_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 4.290e-9
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 0
Query:    1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 42
            MS + +  VKWFN  K YGF   D GEDVF+HYRSIQ  G R
Sbjct:    1 MSVREKGVVKWFNNSKGYGFITRDQGEDVFVHYRSIQGDGFR 42          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A7V2PUH6_9CHLR (Cold shock domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V2PUH6_9CHLR)

HSP 1 Score: 55.1 bits (131), Expect = 5.950e-9
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 0
Query:    1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLRR 43
            MS +   TVKWFN  K YGF   + GEDVF+HY SI M G RR
Sbjct:    1 MSERLTGTVKWFNARKGYGFIGYEEGEDVFVHYSSIDMEGYRR 43          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: UPI001E5969DE (cold-shock protein n=1 Tax=Longispora fulva TaxID=619741 RepID=UPI001E5969DE)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-8
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    3 SKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 42
            S +E TVKWFN EK YGF   D G+DVF+H+ SIQM G +
Sbjct:   19 SVAEGTVKWFNSEKGYGFIAVDGGQDVFVHFSSIQMDGYK 58          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A1E4ZWN7_9GAMM (CSD domain-containing protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E4ZWN7_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 1.700e-8
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0
Query:    4 KSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSI 36
            KS  TVKWF+  K YGF VN+AGEDVF+HYRSI
Sbjct:    3 KSIGTVKWFDNAKGYGFIVNEAGEDVFVHYRSI 35          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A1H0RPX6_MICTS (Cold-shock DNA-binding protein family n=8 Tax=Microbacteriaceae TaxID=85023 RepID=A0A1H0RPX6_MICTS)

HSP 1 Score: 53.5 bits (127), Expect = 2.250e-8
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0
Query:    8 TVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 42
            TVKWFN EK +GF   D G+DVF+HY SI+M G R
Sbjct:    5 TVKWFNAEKGFGFITVDDGQDVFVHYSSIEMSGFR 39          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A2M9E9Z1_9GAMM (Cold-shock protein n=7 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A2M9E9Z1_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 2.420e-8
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 42
            MS +   TVKWFN  K +GF   ++GEDVF+H+R+IQM G +
Sbjct:    1 MSDRETGTVKWFNDAKGFGFISRESGEDVFVHFRAIQMQGFK 42          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: UPI001CE3EDC5 (cold shock domain-containing protein n=1 Tax=Pseudoclavibacter sp. Marseille-Q3772 TaxID=2866588 RepID=UPI001CE3EDC5)

HSP 1 Score: 53.5 bits (127), Expect = 2.480e-8
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 0
Query:    8 TVKWFNVEKSYGFAVND----AGEDVFIHYRSIQMVGLR 42
            TVKWFN EK YGF   D    AG+DVF+HYRSI+M G R
Sbjct:    5 TVKWFNAEKGYGFITVDSADAAGQDVFVHYRSIEMDGFR 43          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A1B3WBV0_9GAMM (Cold-shock protein n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A1B3WBV0_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 3.690e-8
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 42
            M+ +   TVKWFN  K +GF   D+GEDVF+H+R+IQM G +
Sbjct:    3 MAEREIGTVKWFNDAKGFGFISRDSGEDVFVHFRAIQMPGFK 44          
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A6N7GPF5_9ACTN (Cold-shock protein n=4 Tax=Micromonosporaceae TaxID=28056 RepID=A0A6N7GPF5_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 4.880e-8
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0
Query:    8 TVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 42
            TVKWFN EK YGF   D GEDVF+H+ SI+M G +
Sbjct:    5 TVKWFNSEKGYGFIAVDGGEDVFVHFSSIEMDGYK 39          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A357IBD8_9GAMM2.130e-961.90Cold shock domain protein CspD n=1 Tax=Gammaproteo... [more]
A0A352KLI8_9GAMM4.290e-959.52Cold-shock protein n=1 Tax=Gammaproteobacteria bac... [more]
A0A7V2PUH6_9CHLR5.950e-958.14Cold shock domain-containing protein n=1 Tax=Anaer... [more]
UPI001E5969DE1.260e-860.00cold-shock protein n=1 Tax=Longispora fulva TaxID=... [more]
A0A1E4ZWN7_9GAMM1.700e-872.73CSD domain-containing protein n=1 Tax=Chromatiales... [more]
A0A1H0RPX6_MICTS2.250e-862.86Cold-shock DNA-binding protein family n=8 Tax=Micr... [more]
A0A2M9E9Z1_9GAMM2.420e-852.38Cold-shock protein n=7 Tax=Xanthomonadaceae TaxID=... [more]
UPI001CE3EDC52.480e-864.10cold shock domain-containing protein n=1 Tax=Pseud... [more]
A0A1B3WBV0_9GAMM3.690e-852.38Cold-shock protein n=3 Tax=Xanthomonadaceae TaxID=... [more]
A0A6N7GPF5_9ACTN4.880e-862.86Cold-shock protein n=4 Tax=Micromonosporaceae TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 27..36
score: 52.02
coord: 7..22
score: 56.32
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 8..42
e-value: 5.6E-11
score: 42.1
IPR012156Cold shock, CspAPIRSFPIRSF002599Cold_shock_Acoord: 1..43
e-value: 1.1E-9
score: 35.8
NoneNo IPR availableGENE3D2.30.30.1120coord: 5..43
e-value: 6.4E-15
score: 56.3
NoneNo IPR availablePROSITEPS51857CSD_2coord: 4..43
score: 15.204
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 8..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102300contigP-canaliculata_contig102300:662..793 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102300.365.1mRNA_P-canaliculata_contig102300.365.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig102300 594..793 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig102300.365.1 ID=prot_P-canaliculata_contig102300.365.1|Name=mRNA_P-canaliculata_contig102300.365.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=44bp
MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR012156Cold_shock_CspA
IPR012340NA-bd_OB-fold