mRNA_P-canaliculata_contig102300.365.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A357IBD8_9GAMM (Cold shock domain protein CspD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A357IBD8_9GAMM) HSP 1 Score: 57.4 bits (137), Expect = 1.840e-9 Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 1 Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 MS +S TVKWF+ K YGF VN GEDVF+HYRSIQ G + Sbjct: 1 MSERSNGTVKWFDNAKGYGFIVNPDGEDVFVHYRSIQGDGYK 42
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A352KLI8_9GAMM (Cold-shock protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A352KLI8_9GAMM) HSP 1 Score: 56.6 bits (135), Expect = 3.700e-9 Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 1 Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 MS + + VKWFN K YGF D GEDVF+HYRSIQ G R Sbjct: 1 MSVREKGVVKWFNNSKGYGFITRDQGEDVFVHYRSIQGDGFR 42
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A7V2PUH6_9CHLR (Cold shock domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V2PUH6_9CHLR) HSP 1 Score: 55.8 bits (133), Expect = 7.270e-9 Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 1 Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLRR 129 MS + TVKWFN K YGF + GEDVF+HY SI M G RR Sbjct: 1 MSERLTGTVKWFNARKGYGFIGYEEGEDVFVHYSSIDMEGYRR 43
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: UPI001E5969DE (cold-shock protein n=1 Tax=Longispora fulva TaxID=619741 RepID=UPI001E5969DE) HSP 1 Score: 55.8 bits (133), Expect = 1.090e-8 Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 Query: 7 SKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 S +E TVKWFN EK YGF D G+DVF+H+ SIQM G + Sbjct: 19 SVAEGTVKWFNSEKGYGFIAVDGGQDVFVHFSSIQMDGYK 58
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A1E4ZWN7_9GAMM (CSD domain-containing protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E4ZWN7_9GAMM) HSP 1 Score: 55.1 bits (131), Expect = 1.470e-8 Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 Query: 10 KSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 KS TVKWF+ K YGF VN+AGEDVF+HYRSI G + Sbjct: 3 KSIGTVKWFDNAKGYGFIVNEAGEDVFVHYRSIVGEGYK 41
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A1H0RPX6_MICTS (Cold-shock DNA-binding protein family n=8 Tax=Microbacteriaceae TaxID=85023 RepID=A0A1H0RPX6_MICTS) HSP 1 Score: 54.7 bits (130), Expect = 1.940e-8 Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 Query: 22 TVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 TVKWFN EK +GF D G+DVF+HY SI+M G R Sbjct: 5 TVKWFNAEKGFGFITVDDGQDVFVHYSSIEMSGFR 39
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A2M9E9Z1_9GAMM (Cold-shock protein n=7 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A2M9E9Z1_9GAMM) HSP 1 Score: 54.7 bits (130), Expect = 2.080e-8 Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 MS + TVKWFN K +GF ++GEDVF+H+R+IQM G + Sbjct: 1 MSDRETGTVKWFNDAKGFGFISRESGEDVFVHFRAIQMQGFK 42
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: UPI001CE3EDC5 (cold shock domain-containing protein n=1 Tax=Pseudoclavibacter sp. Marseille-Q3772 TaxID=2866588 RepID=UPI001CE3EDC5) HSP 1 Score: 54.7 bits (130), Expect = 2.130e-8 Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 1 Query: 22 TVKWFNVEKSYGFAVND----AGEDVFIHYRSIQMVGLR 126 TVKWFN EK YGF D AG+DVF+HYRSI+M G R Sbjct: 5 TVKWFNAEKGYGFITVDSADAAGQDVFVHYRSIEMDGFR 43
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A1B3WBV0_9GAMM (Cold-shock protein n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A1B3WBV0_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 3.170e-8 Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 M+ + TVKWFN K +GF D+GEDVF+H+R+IQM G + Sbjct: 3 MAEREIGTVKWFNDAKGFGFISRDSGEDVFVHFRAIQMPGFK 44
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match: A0A6N7GPF5_9ACTN (Cold-shock protein n=4 Tax=Micromonosporaceae TaxID=28056 RepID=A0A6N7GPF5_9ACTN) HSP 1 Score: 53.9 bits (128), Expect = 4.190e-8 Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 Query: 22 TVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126 TVKWFN EK YGF D GEDVF+H+ SI+M G + Sbjct: 5 TVKWFNSEKGYGFIAVDGGEDVFVHFSSIEMDGYK 39 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102300.365.1 >prot_P-canaliculata_contig102300.365.1 ID=prot_P-canaliculata_contig102300.365.1|Name=mRNA_P-canaliculata_contig102300.365.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=44bp MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLRR*back to top mRNA from alignment at P-canaliculata_contig102300:594..793- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102300.365.1 ID=mRNA_P-canaliculata_contig102300.365.1|Name=mRNA_P-canaliculata_contig102300.365.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=200bp|location=Sequence derived from alignment at P-canaliculata_contig102300:594..793- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102300:594..793- >mRNA_P-canaliculata_contig102300.365.1 ID=mRNA_P-canaliculata_contig102300.365.1|Name=mRNA_P-canaliculata_contig102300.365.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at P-canaliculata_contig102300:594..793- (Pelvetia canaliculata dioecious)back to top |