prot_P-canaliculata_contig10226.358.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10226.358.1
Unique Nameprot_P-canaliculata_contig10226.358.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length677
Homology
BLAST of mRNA_P-canaliculata_contig10226.358.1 vs. uniprot
Match: D7FKW0_ECTSI (ATG13 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW0_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 8.740e-54
Identity = 216/676 (31.95%), Postives = 288/676 (42.60%), Query Frame = 0
Query:    2 RDDLGFCLYPILDSGGGGSGLDFGEIPRQGGQQHETESRRDSSICSFSFKPLETPHGTVLVKVTYRKGTNSKALQQGHTMDSPPSVTPNMTSSIIQDYVPDEYDNDQLRQDLQDSKGIIARGAEGEVHLDYRPRLATTPEDATMASRSPIDGNQQGGRVAQHVDEHGMISRLGALLQHDINPTTPGATIGTNNRSSFEPSRSRDAYNMGEVDLEPGPDVLNWPSPQQGHGYAAKRVANLTGQGPAPFLTPGPHRHKLVPSSRQRMEPLDLGPTADVCEREPRQTAAPMLQIAGHTRSLTRDSGNCYD--SGRRDSSD-DSSTGGVHTRSRSLTAQGSFKGYAGREGDAVLLHDDFQNQTTQRADTDTEQGMQVYGMRNSIGHHRSTLLHCGAPESTPPFSYCEAAAPARTIDTEGGGSPFRLSQPLVTFSPPFYADPDENRSAGEAATHDGKGDTPPPPQPDTSKHPYAPNARYSAPRTSVVALSTSSSLALLETLPESPFAGRAQG-QPNSDIGTGISTAAGLSTVFLTPTAVHRRNEASHVSNQSSARAAFGESEGLPFSTEMPDDGFEALAQDRR-GIGSQRGTNDPKGTLFPSYSGVDSKSVILMQQGSQRQDTEEAQLPLALGSNAAAADVETEGSAYARGTGMHLAGEAEKTVR-MEEELDGFRQFHQEL 671
            RDD GF LYP+ D G  GSGLDF      GG+ H   S R S+ C ++FKPL+ PHG+V V   YR+G +SKA Q G T  +  +  P+MT+S+I DYV DEY+ +             +R    EV+ D+ P+L +TPED        +D         QH                       G  +   N S                       +++WPSP+ GHGYA KR      QGPAPFLTPGPHR + +      MEPL+LGP A++  R P    AP   +      L R S       SGR +S+  DS       R    TA+G   G A R     L+    +N  ++   T +  G    G R + GH  ST +     E TPPFSY        T   + G     L QPLV+FSPPF A        G+   HD                 ++     S PR  V  L        LE LPESPFA R +G QP    GT ++++   S  FL       R + S      +A +A  +   LPF+ E+ DDG  A       G+     ++    TL+   S   SKS+ L    S+  +           SN    DV + G+ Y    G       E  VR +EE+L+GFR F QE+
Sbjct:  148 RDDTGFSLYPLRDGGSCGSGLDFSA---SGGEDHAGRSGRKSTSC-YTFKPLKAPHGSVKVICHYRRGVDSKAYQHGQT--NTVTAAPDMTTSLIPDYVTDEYERN----------AAASRMPATEVNHDW-PKLPSTPEDGASVPDGAVDA------YGQHA----------------------GNKVSKENTS-----------------------MMHWPSPELGHGYAEKRTHIGPRQGPAPFLTPGPHRGRPLGRHDVMMEPLELGPNAEIHARGPPHFPAP--PVRQENEDLIRVSAQTLSGASGRTESNHVDSHCSNGMIR----TAEGGEDGVADRG--RALMRPYRRNSISESLSTPSGSG----GSRITAGHRHSTAI-----EYTPPFSY-------NTTGPDLGERNIALGQPLVSFSPPFNA-----VHVGQRG-HDST---------------FSIRVHSSGPRAPVPTL--------LEVLPESPFALRKEGTQPPGVPGTAVASS---SRPFLP------RLDCSSQEPTFAATSAGIDRTELPFAAELQDDGVSASVDSSVCGVEGGLDSSAAPSTLYALCSAASSKSIFLADPSSEYAEQTAVGFLQERDSN----DVPSPGAEYTSTAGSLPQ---EVIVRSLEEDLEGFRLFQQEV 686          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10226.358.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKW0_ECTSI8.740e-5431.95ATG13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10226contigP-canaliculata_contig10226:356..5964 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10226.358.1mRNA_P-canaliculata_contig10226.358.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10226 302..6328 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10226.358.1 ID=prot_P-canaliculata_contig10226.358.1|Name=mRNA_P-canaliculata_contig10226.358.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=677bp
MRDDLGFCLYPILDSGGGGSGLDFGEIPRQGGQQHETESRRDSSICSFSF
KPLETPHGTVLVKVTYRKGTNSKALQQGHTMDSPPSVTPNMTSSIIQDYV
PDEYDNDQLRQDLQDSKGIIARGAEGEVHLDYRPRLATTPEDATMASRSP
IDGNQQGGRVAQHVDEHGMISRLGALLQHDINPTTPGATIGTNNRSSFEP
SRSRDAYNMGEVDLEPGPDVLNWPSPQQGHGYAAKRVANLTGQGPAPFLT
PGPHRHKLVPSSRQRMEPLDLGPTADVCEREPRQTAAPMLQIAGHTRSLT
RDSGNCYDSGRRDSSDDSSTGGVHTRSRSLTAQGSFKGYAGREGDAVLLH
DDFQNQTTQRADTDTEQGMQVYGMRNSIGHHRSTLLHCGAPESTPPFSYC
EAAAPARTIDTEGGGSPFRLSQPLVTFSPPFYADPDENRSAGEAATHDGK
GDTPPPPQPDTSKHPYAPNARYSAPRTSVVALSTSSSLALLETLPESPFA
GRAQGQPNSDIGTGISTAAGLSTVFLTPTAVHRRNEASHVSNQSSARAAF
GESEGLPFSTEMPDDGFEALAQDRRGIGSQRGTNDPKGTLFPSYSGVDSK
SVILMQQGSQRQDTEEAQLPLALGSNAAAADVETEGSAYARGTGMHLAGE
AEKTVRMEEELDGFRQFHQELERQGP*
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