mRNA_P-canaliculata_contig102212.353.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102212.353.1
Unique NamemRNA_P-canaliculata_contig102212.353.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A7T4YEN3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7T4YEN3_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.270e-18
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAALDGA 213
            SV D+I LQA+WFAL++L +LP +E+ALG DRAGVL+ +H   L  R+D++ +P  MVELID A  +L  A
Sbjct:   47 SVVDVIMLQAVWFALENLKDLPREEQALGVDRAGVLVAKHVGELERRYDNQDMPGLMVELIDDAEKSLHAA 117          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A7X0H787_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H787_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 1.970e-17
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAAL 204
            +VPD+I LQA+WF+L++LDEL  DERALG D+A VLI +H  AL + + +E +P  ++ELI  A+ AL
Sbjct:   48 AVPDIITLQAVWFSLENLDELDADERALGLDKAQVLIEKHTAALEQAWAEEPMPKELLELIHDAKTAL 115          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A2E2B1U3_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B1U3_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 3.250e-17
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELI 183
            SVPDLI LQA+WFALQH+DEL  D++ALG DRAGVLI +HA  LR R+  + +P  +  LI
Sbjct:   45 SVPDLIMLQAVWFALQHMDELSADQQALGLDRAGVLIDQHAGVLRSRWAPDTLPQRIENLI 105          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A2D6LMA0_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D6LMA0_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 6.530e-17
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAAL 204
            SV DLI LQA+WFALQ+LD+L PDERALG DRA +LI +HA  LR  + D  +P  + ELI+ A   L
Sbjct:   47 SVVDLITLQAVWFALQNLDDLDPDERALGIDRADLLIQQHAKVLRRCWGDADLPPQVSELIEQATRQL 114          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A518BZF7_9BACT (Uncharacterized protein n=1 Tax=Mucisphaera calidilacus TaxID=2527982 RepID=A0A518BZF7_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 1.860e-16
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAAL 204
            + PDLI LQAIWFALQHL ELPP+++ALGRDRA V I      L + +  E +P  +  L++ A++AL
Sbjct:   51 ATPDLISLQAIWFALQHLHELPPEQQALGRDRAAVQIASSTRNLNQLWSPEPLPENVASLVEDAQSAL 118          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A7G9NZG5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NZG5_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 7.850e-16
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAAL 204
            SVPD+I LQA+  AL   + L PDERALG DRA VLI RH   L   F DEG+PA + ELID A  A+
Sbjct:   41 SVPDIIGLQAVTMALGEAELLEPDERALGLDRARVLIQRHTRNLHTLFKDEGLPAKLTELIDDANDAV 108          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A2D5YZP3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5YZP3_9PLAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.280e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAALDGA 213
            SVP +I LQA+  AL+ +DELP DERALG DRA +L+ RH   LRE F    +PA + EL+  AR A++ A
Sbjct:   62 SVPAIIGLQALCMALKEVDELPADERALGVDRARILLDRHTAGLREAFGPGELPAMLEELVSDARGAIEAA 132          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A3C0ESB5_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3C0ESB5_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.270e-15
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAAL 204
            SVPDLI LQA+WFALQH+DEL   E+ALG DRA VL+  H   L   +  E +P  + +LI   R  L
Sbjct:   59 SVPDLIMLQAVWFALQHMDELSAAEQALGLDRATVLVDHHTVQLNAHWQSEDLPQKIEQLITDVRQML 126          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A2E5G535_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E5G535_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 2.040e-14
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAAL 204
            SVPD+I LQA+WF+L+HLDEL P +RAL  D A VLI +H++A+  R+  + +P  + +LI  A+  L
Sbjct:   40 SVPDIIVLQAVWFSLEHLDELNPGDRALALDHAEVLIDKHSSAISLRWPPDSLPKLLQQLIGDAKDRL 107          
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Match: A0A6I7PYW4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6I7PYW4_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.360e-13
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDDEGVPAGMVELIDAARAAL 204
            SV  ++ LQA+ FAL   DELP DERALG DRA VLI  HA  L E +  E +P  + ELID ARAAL
Sbjct:   19 SVAPIVGLQAVVFALADTDELPDDERALGLDRADVLIRAHAADLHEAWRAEPMPPLVAELIDDARAAL 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102212.353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7T4YEN3_9BACT1.270e-1853.52Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7X0H787_9BACT1.970e-1752.94Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A2E2B1U3_9BACT3.250e-1760.66Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A2D6LMA0_9BACT6.530e-1757.35Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A518BZF7_9BACT1.860e-1651.47Uncharacterized protein n=1 Tax=Mucisphaera calidi... [more]
A0A7G9NZG5_9BACT7.850e-1657.35Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A2D5YZP3_9PLAN1.280e-1552.11Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3C0ESB5_9BACT5.270e-1551.47Uncharacterized protein n=2 Tax=Phycisphaerales ba... [more]
A0A2E5G535_9BACT2.040e-1448.53Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A6I7PYW4_9BACT1.360e-1357.35Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102212contigP-canaliculata_contig102212:2..217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.8950243-CDS-P-canaliculata_contig102212:1..2171622815595.8950243-CDS-P-canaliculata_contig102212:1..217Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102212 2..217 +
1693494156.811067-CDS-P-canaliculata_contig102212:1..2171693494156.811067-CDS-P-canaliculata_contig102212:1..217Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102212 2..217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102212.353.1prot_P-canaliculata_contig102212.353.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102212 2..217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102212.353.1

>prot_P-canaliculata_contig102212.353.1 ID=prot_P-canaliculata_contig102212.353.1|Name=mRNA_P-canaliculata_contig102212.353.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=72bp
SVPDLIQLQAIWFALQHLDELPPDERALGRDRAGVLITRHATALRERFDD
EGVPAGMVELIDAARAALDGA*
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mRNA from alignment at P-canaliculata_contig102212:2..217+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102212.353.1 ID=mRNA_P-canaliculata_contig102212.353.1|Name=mRNA_P-canaliculata_contig102212.353.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at P-canaliculata_contig102212:2..217+ (Pelvetia canaliculata dioecious)
TCGGTGCCCGACCTGATCCAGTTGCAGGCCATCTGGTTCGCGCTGCAACA TCTGGACGAGCTGCCGCCCGACGAGCGGGCCTTGGGCCGCGACCGGGCCG GCGTGCTGATCACGCGGCACGCAACCGCGCTGCGCGAGCGGTTTGACGAC GAAGGCGTGCCGGCGGGCATGGTCGAGTTGATTGACGCAGCGCGGGCGGC CCTGGACGGGGCGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102212:2..217+

>mRNA_P-canaliculata_contig102212.353.1 ID=mRNA_P-canaliculata_contig102212.353.1|Name=mRNA_P-canaliculata_contig102212.353.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig102212:2..217+ (Pelvetia canaliculata dioecious)
TCGGTGCCCGACCTGATCCAGTTGCAGGCCATCTGGTTCGCGCTGCAACA
TCTGGACGAGCTGCCGCCCGACGAGCGGGCCTTGGGCCGCGACCGGGCCG
GCGTGCTGATCACGCGGCACGCAACCGCGCTGCGCGAGCGGTTTGACGAC
GAAGGCGTGCCGGCGGGCATGGTCGAGTTGATTGACGCAGCGCGGGCGGC
CCTGGACGGGGCGTGATCGGTGCCCGACCTGATCCAGTTGCAGGCCATCT
GGTTCGCGCTGCAACATCTGGACGAGCTGCCGCCCGACGAGCGGGCCTTG
GGCCGCGACCGGGCCGGCGTGCTGATCACGCGGCACGCAACCGCGCTGCG
CGAGCGGTTTGACGACGAAGGCGTGCCGGCGGGCATGGTCGAGTTGATTG
ACGCAGCGCGGGCGGCCCTGGACGGGGCGTGA
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