mRNA_P-canaliculata_contig10221.348.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10221.348.1
Unique NamemRNA_P-canaliculata_contig10221.348.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10221.348.1 vs. uniprot
Match: A0A6A6PKQ2_9PEZI (Uncharacterized protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PKQ2_9PEZI)

HSP 1 Score: 157 bits (397), Expect = 1.320e-40
Identity = 91/249 (36.55%), Postives = 132/249 (53.01%), Query Frame = 1 
Query:    4 MKLHKPGTDQECSVTVDLNGEPCTEHAFPPHDGLTQKLHPDANVIECFIAVCDNDVVTIHTHFMGSVLHASVDIVADGAFVSTERIEGSSERVIKVQRRDWKWEMVHDLRRSSSDVHAATPTKVIGGTMHAKPL-ETGAVAARGGSGCGYKLGVGSLAVIVSCSQVAKETYYDPYVTAALGSWRERSTKNCGDGGIGATHELTLCGKEAKLSYNMQVKHLRQFEQPRFGQKSWGKFIFYYRDKLAMEQA 747
            M+ H P TD+   + V +NG PC E+  P  +G+      + N + C I V D D + I  +F G++LH SVD++ADG+F++ +RIEGS    +K  +R   ++ V D+            T V+ G + A  L ET  VA       G   GVGSL++++S S+ A + Y   Y     GSW+ R      DGG+  THEL +   +  ++ + Q KH R   Q RFG K W KFIFYYR + A+E A
Sbjct:    1 MRCHTPNTDRSAELQVFINGLPCAEYTLP--NGVVDS---EPNTLSCIIPVSDGDELKIRGYFEGTILHGSVDLLADGSFLADKRIEGSKSGEVKAVKRKLDFDRVFDMPVPPGHTSIYPSTLVVEGVLTACRLQETPTVAD------GVDDGVGSLSIVISISEHASDNYETDYSDLTCGSWKTRDIDGVTDGGLPPTHELGVHVTDPNVNPSRQSKHRRHVAQTRFGSKPWAKFIFYYRSRTAIEMA 238
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BLAST of mRNA_P-canaliculata_contig10221.348.1 vs. uniprot
Match: A0A2I0RUI1_9PEZI (Uncharacterized protein n=1 Tax=Cercospora zeina TaxID=348901 RepID=A0A2I0RUI1_9PEZI)

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-18
Identity = 76/261 (29.12%), Postives = 120/261 (45.98%), Query Frame = 1 
Query:    4 MKLHKPGTDQECSVTVDLNGEPCTEHAFPPHDGLTQKLHPDANVIECFIAVCDNDVVTIHTHFMGSVLHASVDIVADGAFVSTERIEGSSERVIKVQRRDWKWEMVHDLR--RSSSDVHAATPTKVIGGTMHAKPLETGAVAA---RGGSGCGYKLGVGSLAVIVSCSQVAKETYYDPYVTAAL-----GSWRERSTKNCGDGGIGATHELTLCGKEAK-LSYNMQVKHLRQFEQ-PRFGQKSWGKFIFYYRDKLAMEQAG 750
            MK  +PGTDQ+  + V  +G    E+  P       K +P  N++ECF+AV  +  +T+   F G+ L AS D+V DG+F+   RI    ER   V  R+ ++E V+D    +         P  V    + A+P+E   +             + GVGS+ V+V+     K+T  D     A      G W  R  K   + GI  T+ + +    +K +       H   +    RFG+K WG+F+FYYR +  +++AG
Sbjct:    1 MKGERPGTDQQLEIAVCADGVRLPEYVLPG-----AKTYP--NIVECFVAVEASQEITVRGRFEGTTLAASFDLVIDGSFLQDSRIHDKGERQHAV--RNLRFERVYDCPSVKPGWTSQLQPPLDVYEADLFAQPIEESRIVLAHIEDEDKWQERPGVGSIQVVVNM----KDTQIDQRKDDAEWDIEGGGWIHRFQKPVRNSGIKPTYSMEVRRASSKPIKQKRSKTHRNHWNMHARFGEKPWGRFVFYYRSQTDIDKAG 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10221.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A6PKQ2_9PEZI1.320e-4036.55Uncharacterized protein n=1 Tax=Neohortaea acidoph... [more]
A0A2I0RUI1_9PEZI1.300e-1829.12Uncharacterized protein n=1 Tax=Cercospora zeina T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10221contigP-canaliculata_contig10221:2694..3446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score115.2
Seed ortholog evalue4.5e-23
Seed eggNOG ortholog1047171.Mycgr3P110093
KEGG koko:K14285
KEGG TC1.l.1
KEGG Pathwayko03008,ko03013,ko03015,ko05164,map03008,map03013,map03015,map05164
KEGG ModuleM00430
EggNOG OGs2054M@147541,2D4PE@1,2SVU3@2759,3AA99@33154,3MM65@451867,3P86B@4751,3RNMJ@4890
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size753
Cds size750
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.6425412-CDS-P-canaliculata_contig10221:2693..34431622815595.6425412-CDS-P-canaliculata_contig10221:2693..3443Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 2694..3443 -
1693494156.7260087-CDS-P-canaliculata_contig10221:2693..34431693494156.7260087-CDS-P-canaliculata_contig10221:2693..3443Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 2694..3443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.654628-UTR-P-canaliculata_contig10221:3443..34461622815595.654628-UTR-P-canaliculata_contig10221:3443..3446Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10221 3444..3446 -
1693494156.7396286-UTR-P-canaliculata_contig10221:3443..34461693494156.7396286-UTR-P-canaliculata_contig10221:3443..3446Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10221 3444..3446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10221.348.1prot_P-canaliculata_contig10221.348.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10221 2694..3443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10221.348.1

>prot_P-canaliculata_contig10221.348.1 ID=prot_P-canaliculata_contig10221.348.1|Name=mRNA_P-canaliculata_contig10221.348.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=250bp
MKLHKPGTDQECSVTVDLNGEPCTEHAFPPHDGLTQKLHPDANVIECFIA
VCDNDVVTIHTHFMGSVLHASVDIVADGAFVSTERIEGSSERVIKVQRRD
WKWEMVHDLRRSSSDVHAATPTKVIGGTMHAKPLETGAVAARGGSGCGYK
LGVGSLAVIVSCSQVAKETYYDPYVTAALGSWRERSTKNCGDGGIGATHE
LTLCGKEAKLSYNMQVKHLRQFEQPRFGQKSWGKFIFYYRDKLAMEQAGL
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mRNA from alignment at P-canaliculata_contig10221:2694..3446-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10221.348.1 ID=mRNA_P-canaliculata_contig10221.348.1|Name=mRNA_P-canaliculata_contig10221.348.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at P-canaliculata_contig10221:2694..3446- (Pelvetia canaliculata dioecious)
ACCATGAAGCTTCATAAGCCGGGTACTGATCAAGAGTGCTCCGTCACGGT
GGATTTAAACGGCGAGCCATGCACTGAGCACGCATTCCCACCGCATGACG
GGCTCACGCAAAAACTGCACCCTGATGCCAACGTCATTGAGTGCTTCATC
GCGGTCTGTGACAATGACGTTGTCACCATCCATACGCATTTCATGGGTTC
GGTTCTTCATGCTTCTGTTGACATCGTCGCGGATGGTGCTTTCGTTTCAA
CCGAGCGCATTGAAGGCTCGAGCGAGAGGGTAATAAAGGTTCAAAGAAGG
GACTGGAAGTGGGAGATGGTTCACGATCTACGCAGGTCTTCGAGCGACGT
GCATGCCGCCACTCCGACCAAGGTCATCGGAGGCACAATGCACGCGAAAC
CTCTGGAGACTGGAGCCGTCGCCGCCCGTGGTGGTAGCGGTTGTGGCTAT
AAACTAGGCGTCGGAAGCCTGGCGGTGATCGTCAGTTGCAGCCAAGTGGC
CAAGGAGACTTATTACGACCCCTATGTCACTGCCGCTCTTGGCTCATGGC
GCGAGAGAAGCACGAAGAACTGCGGCGACGGCGGGATTGGAGCCACCCAT
GAGCTCACACTTTGCGGCAAAGAAGCAAAGCTGAGTTACAACATGCAAGT
CAAGCACTTGCGACAGTTTGAACAGCCTCGGTTTGGGCAGAAATCGTGGG
GAAAATTTATTTTCTACTACCGAGACAAGCTTGCTATGGAGCAGGCGGGG
CTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10221:2694..3446-

>mRNA_P-canaliculata_contig10221.348.1 ID=mRNA_P-canaliculata_contig10221.348.1|Name=mRNA_P-canaliculata_contig10221.348.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1500bp|location=Sequence derived from alignment at P-canaliculata_contig10221:2694..3446- (Pelvetia canaliculata dioecious)
ATGAAGCTTCATAAGCCGGGTACTGATCAAGAGTGCTCCGTCACGGTGGA
TTTAAACGGCGAGCCATGCACTGAGCACGCATTCCCACCGCATGACGGGC
TCACGCAAAAACTGCACCCTGATGCCAACGTCATTGAGTGCTTCATCGCG
GTCTGTGACAATGACGTTGTCACCATCCATACGCATTTCATGGGTTCGGT
TCTTCATGCTTCTGTTGACATCGTCGCGGATGGTGCTTTCGTTTCAACCG
AGCGCATTGAAGGCTCGAGCGAGAGGGTAATAAAGGTTCAAAGAAGGGAC
TGGAAGTGGGAGATGGTTCACGATCTACGCAGGTCTTCGAGCGACGTGCA
TGCCGCCACTCCGACCAAGGTCATCGGAGGCACAATGCACGCGAAACCTC
TGGAGACTGGAGCCGTCGCCGCCCGTGGTGGTAGCGGTTGTGGCTATAAA
CTAGGCGTCGGAAGCCTGGCGGTGATCGTCAGTTGCAGCCAAGTGGCCAA
GGAGACTTATTACGACCCCTATGTCACTGCCGCTCTTGGCTCATGGCGCG
AGAGAAGCACGAAGAACTGCGGCGACGGCGGGATTGGAGCCACCCATGAG
CTCACACTTTGCGGCAAAGAAGCAAAGCTGAGTTACAACATGCAAGTCAA
GCACTTGCGACAGTTTGAACAGCCTCGGTTTGGGCAGAAATCGTGGGGAA
AATTTATTTTCTACTACCGAGACAAGCTTGCTATGGAGCAGGCGGGGCTG
ATGAAGCTTCATAAGCCGGGTACTGATCAAGAGTGCTCCGTCACGGTGGA
TTTAAACGGCGAGCCATGCACTGAGCACGCATTCCCACCGCATGACGGGC
TCACGCAAAAACTGCACCCTGATGCCAACGTCATTGAGTGCTTCATCGCG
GTCTGTGACAATGACGTTGTCACCATCCATACGCATTTCATGGGTTCGGT
TCTTCATGCTTCTGTTGACATCGTCGCGGATGGTGCTTTCGTTTCAACCG
AGCGCATTGAAGGCTCGAGCGAGAGGGTAATAAAGGTTCAAAGAAGGGAC
TGGAAGTGGGAGATGGTTCACGATCTACGCAGGTCTTCGAGCGACGTGCA
TGCCGCCACTCCGACCAAGGTCATCGGAGGCACAATGCACGCGAAACCTC
TGGAGACTGGAGCCGTCGCCGCCCGTGGTGGTAGCGGTTGTGGCTATAAA
CTAGGCGTCGGAAGCCTGGCGGTGATCGTCAGTTGCAGCCAAGTGGCCAA
GGAGACTTATTACGACCCCTATGTCACTGCCGCTCTTGGCTCATGGCGCG
AGAGAAGCACGAAGAACTGCGGCGACGGCGGGATTGGAGCCACCCATGAG
CTCACACTTTGCGGCAAAGAAGCAAAGCTGAGTTACAACATGCAAGTCAA
GCACTTGCGACAGTTTGAACAGCCTCGGTTTGGGCAGAAATCGTGGGGAA
AATTTATTTTCTACTACCGAGACAAGCTTGCTATGGAGCAGGCGGGGCTG
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