mRNA_P-canaliculata_contig10221.347.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10221.347.1
Unique NamemRNA_P-canaliculata_contig10221.347.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: A0A6G1KXB7_9PEZI (Uncharacterized protein n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1KXB7_9PEZI)

HSP 1 Score: 153 bits (386), Expect = 1.090e-44
Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV 605
            MPTPIDRA+ SRNLF GFAGIV AVAAW IWG D+FP + DP GEPETWTEDEM+RWL++R L+AGSTATREEL+ARVRANMRAPRV
Sbjct:    1 MPTPIDRAMNSRNLFLGFAGIVTAVAAWGIWGQDLFPKEEDPKGEPETWTEDEMRRWLNSRNLMAGSTATREELLARVRANMRAPRV 87
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BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: M2XIY2_DOTSN (Uncharacterized protein n=2 Tax=Mycosphaerellaceae TaxID=93133 RepID=M2XIY2_DOTSN)

HSP 1 Score: 151 bits (381), Expect = 6.250e-44
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV 605
            MPTP+DRAL S+NLF GF G++ A  AWSIWGGDMFP + DPTGEPE WTE EMKRWL+AR L+AGSTATREEL+ARV+ANMRAPRV
Sbjct:    1 MPTPLDRALNSKNLFLGFTGLIAAATAWSIWGGDMFPKEEDPTGEPENWTETEMKRWLNARNLMAGSTATREELLARVKANMRAPRV 87
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BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: A0A4U0WPM2_9PEZI (Uncharacterized protein n=3 Tax=Friedmanniomyces TaxID=329881 RepID=A0A4U0WPM2_9PEZI)

HSP 1 Score: 150 bits (380), Expect = 8.850e-44
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV 605
            MPTPIDRA+ SRN+F GFAG+V AVAAW IWGGDMFP   DP GEPETW+ED+MKRWL++R L+AG+TATREEL+ARV+ANMRAPRV
Sbjct:    1 MPTPIDRAMNSRNMFLGFAGLVTAVAAWGIWGGDMFPQAEDPKGEPETWSEDDMKRWLNSRNLMAGNTATREELLARVKANMRAPRV 87
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BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: M2YRS9_PSEFD (Uncharacterized protein n=1 Tax=Pseudocercospora fijiensis (strain CIRAD86) TaxID=383855 RepID=M2YRS9_PSEFD)

HSP 1 Score: 146 bits (368), Expect = 5.800e-42
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV 605
            MPTP+DRAL S+NLF GF  +V A  AWSIWG +MFP +PDPTGEPETWT+ EM+RWLD R L+AGSTATREEL+ARV+ANMRAPRV
Sbjct:    1 MPTPLDRALNSKNLFLGFTALVTAATAWSIWGQNMFPKEPDPTGEPETWTDTEMRRWLDNRNLMAGSTATREELLARVKANMRAPRV 87
[Close]
BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: A0A6A6CS86_9PEZI (Uncharacterized protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CS86_9PEZI)

HSP 1 Score: 145 bits (365), Expect = 1.650e-41
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV 605
            MPTP+DRAL S+NLFFGFAG++ A   WSIWG DMFP + DP GEPETWTE++MKRWL +R L+AG+TATREEL+ARV+AN+RAPRV
Sbjct:    1 MPTPLDRALNSKNLFFGFAGLISAATIWSIWGQDMFPKEEDPKGEPETWTEEQMKRWLTSRNLMAGNTATREELLARVKANLRAPRV 87
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BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: M2MYV0_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2MYV0_BAUPA)

HSP 1 Score: 140 bits (354), Expect = 7.610e-40
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV 605
            MPTPIDRA+QSRNL  GFA IV  VAAWSIWG +MFP Q DP GEPE W++DEMKRWL+ARGL+AGS ATREEL+ARV A MRAP V
Sbjct:    1 MPTPIDRAMQSRNLLLGFAAIVTLVAAWSIWGQNMFPQQVDPKGEPENWSKDEMKRWLNARGLMAGSAATREELLARVMAQMRAPSV 87
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BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: A0A318ZSS4_9EURO (Uncharacterized protein n=8 Tax=Aspergillus TaxID=5052 RepID=A0A318ZSS4_9EURO)

HSP 1 Score: 138 bits (348), Expect = 6.720e-39
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPR 602
            MPTP+DRAL S+NLF GF G+V A A W+IWG DMFPA+PDPTG+PETW+ DEM+RWL ARGLL   +ATREEL+ R++AN+R PR
Sbjct:    1 MPTPLDRALNSKNLFLGFTGMVTAAAVWAIWGSDMFPAEPDPTGDPETWSHDEMRRWLRARGLLPHDSATREELLERIKANLRVPR 86
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BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: A0A0F7TG18_PENBI (Putative Title: questionable ORF (Precursor) n=3 Tax=Penicillium brasilianum TaxID=104259 RepID=A0A0F7TG18_PENBI)

HSP 1 Score: 137 bits (346), Expect = 1.560e-38
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPR 602
            MPTP+DRAL+S+NLF GFAG+V AVAAWSIWG D+FPA+ DP G PE+WTEDEM+RWL ARGLL    ATR+EL+ RV+AN+R PR
Sbjct:    1 MPTPLDRALKSQNLFLGFAGMVTAVAAWSIWGSDVFPAETDPKGNPESWTEDEMRRWLRARGLLPSDNATRDELLERVKANLRIPR 86
[Close]
BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: A0A4U0WSS5_9PEZI (Uncharacterized protein n=1 Tax=Cryomyces minteri TaxID=331657 RepID=A0A4U0WSS5_9PEZI)

HSP 1 Score: 137 bits (345), Expect = 1.800e-38
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWG-GDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV 605
            MPTP+DRALQSRN F GFAGI+ AVAAW+IWG  D+FP   DP G+PE+WT+DE++RWL+AR L  GST+TREEL+ARV ANMRAPRV
Sbjct:    1 MPTPLDRALQSRNAFLGFAGIITAVAAWTIWGPSDVFPRAGDPVGDPESWTDDELRRWLEARKLYPGSTSTREELMARVEANMRAPRV 88
[Close]
BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Match: S7ZJ57_PENO1 (Uncharacterized protein n=1 Tax=Penicillium oxalicum (strain 114-2 / CGMCC 5302) TaxID=933388 RepID=S7ZJ57_PENO1)

HSP 1 Score: 137 bits (345), Expect = 2.220e-38
Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 3 
Query:  345 MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWTEDEMKRWLDARGLLAGSTATREELVARVRANMRAPR 602
            MPTP+DRAL+S+NLF GFAG+V AVAAWSIWG D+FPA+ DPTG P+ WTEDE++RWL  RGLL   +ATREEL+ RV+AN+R PR
Sbjct:    1 MPTPLDRALKSQNLFLGFAGMVTAVAAWSIWGSDVFPAEEDPTGNPDDWTEDELRRWLRTRGLLPSDSATREELLERVKANLRVPR 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10221.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G1KXB7_9PEZI1.090e-4480.46Uncharacterized protein n=1 Tax=Teratosphaeria nub... [more]
M2XIY2_DOTSN6.250e-4477.01Uncharacterized protein n=2 Tax=Mycosphaerellaceae... [more]
A0A4U0WPM2_9PEZI8.850e-4477.01Uncharacterized protein n=3 Tax=Friedmanniomyces T... [more]
M2YRS9_PSEFD5.800e-4274.71Uncharacterized protein n=1 Tax=Pseudocercospora f... [more]
A0A6A6CS86_9PEZI1.650e-4172.41Uncharacterized protein n=1 Tax=Zasmidium cellare ... [more]
M2MYV0_BAUPA7.610e-4075.86Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
A0A318ZSS4_9EURO6.720e-3968.60Uncharacterized protein n=8 Tax=Aspergillus TaxID=... [more]
A0A0F7TG18_PENBI1.560e-3870.93Putative Title: questionable ORF (Precursor) n=3 T... [more]
A0A4U0WSS5_9PEZI1.800e-3871.59Uncharacterized protein n=1 Tax=Cryomyces minteri ... [more]
S7ZJ57_PENO12.220e-3869.77Uncharacterized protein n=1 Tax=Penicillium oxalic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10221contigP-canaliculata_contig10221:159..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score150.6
Seed ortholog evalue3.4e-34
Seed eggNOG ortholog64363.EME39412
EggNOG free text desc.Putative stress-responsive nuclear envelope protein
EggNOG OGs20329@147541,2CHAH@1,2S3NW@2759,3A6FW@33154,3MMJA@451867,3P58P@4751,3QXR1@4890
COG Functional cat.S
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size664
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10221.347.1prot_P-canaliculata_contig10221.347.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10221 503..883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.561912-UTR-P-canaliculata_contig10221:158..5021622815595.561912-UTR-P-canaliculata_contig10221:158..502Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10221 159..502 +
1693494156.6451113-UTR-P-canaliculata_contig10221:158..5021693494156.6451113-UTR-P-canaliculata_contig10221:158..502Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10221 159..502 +
1622815595.6086433-UTR-P-canaliculata_contig10221:883..9391622815595.6086433-UTR-P-canaliculata_contig10221:883..939Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10221 884..939 +
1693494156.708783-UTR-P-canaliculata_contig10221:883..9391693494156.708783-UTR-P-canaliculata_contig10221:883..939Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10221 884..939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.5732613-CDS-P-canaliculata_contig10221:502..5381622815595.5732613-CDS-P-canaliculata_contig10221:502..538Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 503..538 +
1693494156.6693795-CDS-P-canaliculata_contig10221:502..5381693494156.6693795-CDS-P-canaliculata_contig10221:502..538Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 503..538 +
1622815595.5847695-CDS-P-canaliculata_contig10221:603..7471622815595.5847695-CDS-P-canaliculata_contig10221:603..747Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 604..747 +
1693494156.6808622-CDS-P-canaliculata_contig10221:603..7471693494156.6808622-CDS-P-canaliculata_contig10221:603..747Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 604..747 +
1622815595.5974429-CDS-P-canaliculata_contig10221:799..8831622815595.5974429-CDS-P-canaliculata_contig10221:799..883Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 800..883 +
1693494156.690606-CDS-P-canaliculata_contig10221:799..8831693494156.690606-CDS-P-canaliculata_contig10221:799..883Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10221 800..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10221.347.1

>prot_P-canaliculata_contig10221.347.1 ID=prot_P-canaliculata_contig10221.347.1|Name=mRNA_P-canaliculata_contig10221.347.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=88bp
MPTPIDRALQSRNLFFGFAGIVCAVAAWSIWGGDMFPAQPDPTGEPETWT
EDEMKRWLDARGLLAGSTATREELVARVRANMRAPRV*
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mRNA from alignment at P-canaliculata_contig10221:159..939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10221.347.1 ID=mRNA_P-canaliculata_contig10221.347.1|Name=mRNA_P-canaliculata_contig10221.347.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=781bp|location=Sequence derived from alignment at P-canaliculata_contig10221:159..939+ (Pelvetia canaliculata dioecious)
GTTTTGATCCCCACGTAAGTCACGTGATCCGTGACTCGAGTCAGATTCCG
GGGCCGACATCACCTCCTCTTGTCGTCTCGTCTTCAAGATCTAACGTGGC
CATTGGTTACTACAAATTATTGGGTCTACTCCTGAAGCTTGCAGACAGAA
CTCTGTAGTAATCTTTGTCGTCAACGGCCTGCGTTCTACCGTGCCACGGG
GGGCAGTTGTCGGAGAGACCGGCAGCCACTGCGACGACACGGCTTTGTCT
GCAGTCGATCAAACATCTCGAGCGTTCAGGATCTGATTGAATCCATCGCT
TCTCGCTCTCTCATTGCCTTCTAGAGCTGTCCAATCCGATCGTCATGCCG
ACACCGATCGATCGAGCACTGCAGTCCAGAGTAAAGCACCAACCGTCATC
AGACTATTGCGTTCTCGACGAACTTCGAACACTGATACGACGCAGAATCT
CTTCTTCGGATTTGCAGGCATCGTTTGCGCCGTGGCTGCATGGTCTATCT
GGGGCGGAGACATGTTTCCTGCACAGCCCGACCCTACTGGAGAGCCAGAA
ACCTGGACCGAAGACGAGATGAAGCGATGGCTGGACGCCGTAAGTGTCTT
TGTCCGCTATGCACAGATAATCATCATCCTGAAAGCAACAGCGTGGTCTC
CTGGCGGGCTCGACAGCGACAAGAGAAGAGCTGGTGGCCCGAGTGAGGGC
CAATATGAGAGCGCCGCGTGTGTGAGTGATGGAGGCAACGGGCGAATTAT
CGCACAGAAACGATCCGGTGCAGCAGAAAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10221:159..939+

>mRNA_P-canaliculata_contig10221.347.1 ID=mRNA_P-canaliculata_contig10221.347.1|Name=mRNA_P-canaliculata_contig10221.347.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at P-canaliculata_contig10221:159..939+ (Pelvetia canaliculata dioecious)
ATGCCGACACCGATCGATCGAGCACTGCAGTCCAGAATGCCGACACCGAT
CGATCGAGCACTGCAGTCCAGAAATCTCTTCTTCGGATTTGCAGGCATCG
TTTGCGCCGTGGCTGCATGGTCTATCTGGGGCGGAGACATGTTTCCTGCA
CAGCCCGACCCTACTGGAGAGCCAGAAACCTGGACCGAAGACGAGATGAA
GCGATGGCTGGACGCCAATCTCTTCTTCGGATTTGCAGGCATCGTTTGCG
CCGTGGCTGCATGGTCTATCTGGGGCGGAGACATGTTTCCTGCACAGCCC
GACCCTACTGGAGAGCCAGAAACCTGGACCGAAGACGAGATGAAGCGATG
GCTGGACGCCCGTGGTCTCCTGGCGGGCTCGACAGCGACAAGAGAAGAGC
TGGTGGCCCGAGTGAGGGCCAATATGAGAGCGCCGCGTGTGTGACGTGGT
CTCCTGGCGGGCTCGACAGCGACAAGAGAAGAGCTGGTGGCCCGAGTGAG
GGCCAATATGAGAGCGCCGCGTGTGTGA
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