mRNA_P-canaliculata_contig102209.346.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A517P1Z1_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517P1Z1_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 2.950e-12 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 Query: 19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIF 189
P NP+L P TG+ +NSEATFLQIT V S A DR+ FAAGPLIT GQL + F+F
Sbjct: 120 PTNPVLAPQPTGLGGVNSEATFLQITPVLSYAATDRLSFAAGPLITTGQLGIDPFVF 176
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A0J1B525_RHOIS (Membrane protein involved in aromatic hydrocarbon degradation n=2 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B525_RHOIS) HSP 1 Score: 61.6 bits (148), Expect = 1.560e-9 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 Query: 19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
P NP+L P TG+ I SEA+FLQI V S+A +R+ AAGPLIT GQ+ E F+F S
Sbjct: 98 PTNPVLAPQPTGLGQITSEASFLQIAPVLSMAMTERLSVAAGPLITTGQVGIEPFVFDS 156
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A5C6EQK6_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EQK6_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 4.070e-9 Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
P NP+L P G+ ++SEATFLQI+ V S+A +R+ FAAGP+IT Q+ E F+F S
Sbjct: 139 PTNPVLAPQPFGLGRVSSEATFLQISPVLSMAVSERISFAAGPIITSAQVGIEPFVFDS 197
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A2G1W510_9BACT (Hydrocarbon degradation protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W510_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 5.560e-9 Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
NP+L P TG+ I SEA+FLQI V S+A +R+ AAGPLIT GQ+ E F+F S
Sbjct: 137 NPVLAPQPTGLGQITSEASFLQIAPVLSMAVTERMSVAAGPLITTGQVGLEPFVFDS 193
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: Q7UUD0_RHOBA (Uncharacterized protein n=7 Tax=Rhodopirellula TaxID=265488 RepID=Q7UUD0_RHOBA) HSP 1 Score: 59.7 bits (143), Expect = 7.610e-9 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
NP+L P TG+ I SEA+FLQI V S+A +R+ AAGPL+T GQ+ E F+F S
Sbjct: 137 NPVLAPQPTGLGQITSEASFLQIAPVLSMAVTERMSVAAGPLVTTGQVGIEPFVFDS 193
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: UPI001E3CABFD (outer membrane protein transport protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E3CABFD) HSP 1 Score: 58.5 bits (140), Expect = 1.950e-8 Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
NP+L P TG+ I+SEA FLQI V S+A +R+ AAGP++T GQ+ E F+F S
Sbjct: 137 NPVLAPQPTGLGQISSEAAFLQIAPVLSMAMTERLSVAAGPILTTGQVGIEPFVFDS 193
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A5C6DTD9_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=2 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DTD9_9BACT) HSP 1 Score: 48.9 bits (115), Expect = 4.900e-5 Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1 Query: 19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
P NP L P TG+ ++S A+FLQI V S+A D + AAGP +T G++ + F+F S
Sbjct: 137 PTNPALAP--TGLGRVDSNASFLQIAPVLSVALRDNLSVAAGPTLTAGRISLDPFVFGS 193 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102209.346.1 >prot_P-canaliculata_contig102209.346.1 ID=prot_P-canaliculata_contig102209.346.1|Name=mRNA_P-canaliculata_contig102209.346.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=65bp MSKFFYPFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLback to top mRNA from alignment at P-canaliculata_contig102209:747..941+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102209.346.1 ID=mRNA_P-canaliculata_contig102209.346.1|Name=mRNA_P-canaliculata_contig102209.346.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at P-canaliculata_contig102209:747..941+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102209:747..941+ >mRNA_P-canaliculata_contig102209.346.1 ID=mRNA_P-canaliculata_contig102209.346.1|Name=mRNA_P-canaliculata_contig102209.346.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at P-canaliculata_contig102209:747..941+ (Pelvetia canaliculata dioecious)back to top |