mRNA_P-canaliculata_contig10216.341.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig10216.341.1
Unique Name	mRNA_P-canaliculata_contig10216.341.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig10216.341.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 6.520e-32
Identity = 68/88 (77.27%), Postives = 79/88 (89.77%), Query Frame = 2

Query:    2 RMRSFSAPKSFDVRRRRAEAAGALRRFVGDAWDASGGDLNALWASTRHLKETVDTELLPAARLMTGEWKAEAALRALLYRFMEDRRGQ 265
            RMR+F APKSF++RR R EA+GALRRFVGDAWDASGGD +ALWAS+RHLKE VDT+LLP ARL+TGEW+AEAALR+LL RFM+DR  Q
Sbjct:  396 RMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQDREQQ 483

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig10216.341.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig10216.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FR72_ECTSI	6.520e-32	77.27	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig10216	contig	P-canaliculata_contig10216:556..2923 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	141.7
Seed ortholog evalue	2.8e-31
Seed eggNOG ortholog	2880.D7FR72
Preferred name	RAD17
KEGG ko	ko:K06662
KEGG Pathway	ko04111,ko04113,map04111,map04113
GOs	GO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006282,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0010972,GO:0016043,GO:0017076,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031389,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0035825,GO:0036094,GO:0042325,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051174,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2001020
EggNOG free text desc.	mitotic DNA replication checkpoint
EggNOG OGs	COG0470@1,KOG1970@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03400
Hectar predicted targeting category	other localisation
Exons	2
Model size	2137
Cds size	468
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10216.341.1	prot_P-canaliculata_contig10216.341.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig10216 560..1258 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815594.9615881-UTR-P-canaliculata_contig10216:555..559	1622815594.9615881-UTR-P-canaliculata_contig10216:555..559	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10216 556..559 +
1693494156.2643592-UTR-P-canaliculata_contig10216:555..559	1693494156.2643592-UTR-P-canaliculata_contig10216:555..559	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10216 556..559 +
1622815594.999095-UTR-P-canaliculata_contig10216:1258..2923	1622815594.999095-UTR-P-canaliculata_contig10216:1258..2923	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10216 1259..2923 +
1693494156.3066869-UTR-P-canaliculata_contig10216:1258..2923	1693494156.3066869-UTR-P-canaliculata_contig10216:1258..2923	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10216 1259..2923 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815594.9737654-CDS-P-canaliculata_contig10216:559..741	1622815594.9737654-CDS-P-canaliculata_contig10216:559..741	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10216 560..741 +
1693494156.2792666-CDS-P-canaliculata_contig10216:559..741	1693494156.2792666-CDS-P-canaliculata_contig10216:559..741	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10216 560..741 +
1622815594.9848654-CDS-P-canaliculata_contig10216:972..1258	1622815594.9848654-CDS-P-canaliculata_contig10216:972..1258	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10216 973..1258 +
1693494156.2875075-CDS-P-canaliculata_contig10216:972..1258	1693494156.2875075-CDS-P-canaliculata_contig10216:972..1258	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10216 973..1258 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig10216:556..2923+
coding sequence from alignment at P-canaliculata_contig10216:556..2923+

protein sequence of mRNA_P-canaliculata_contig10216.341.1

>prot_P-canaliculata_contig10216.341.1 ID=prot_P-canaliculata_contig10216.341.1|Name=mRNA_P-canaliculata_contig10216.341.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=156bp
MRSFSAPKSFDVRRRRAEAAGALRRFVGDAWDASGGDLNALWASTRHLKE
TVDTELLPAARLMTGEWKAEAALRALLYRFMEDRRGQDLELHGQPLGQGH
GHISLPSHSGNIATMSAVSASSLSPPCAPDAKGLGVRQDDGIEDIEEDEV
EDEEF*

mRNA from alignment at P-canaliculata_contig10216:556..2923+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig10216.341.1 ID=mRNA_P-canaliculata_contig10216.341.1|Name=mRNA_P-canaliculata_contig10216.341.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2368bp|location=Sequence derived from alignment at P-canaliculata_contig10216:556..2923+ (Pelvetia canaliculata dioecious)
CAGGATGCGGTCTTTCTCCGCCCCCAAGTCGTTCGACGTGCGCCGCCGTC
GGGCGGAGGCCGCCGGAGCCCTTCGACGCTTCGTTGGAGACGCCTGGGAT
GCCTCGGGCGGGGACCTGAATGCCCTCTGGGCTTCGACCAGACACCTCAA
GGAGACGGTCGACACCGAGCTGCTGCCCGCGGCAAGGTCTGGGGGTTGTG
TGTGTCCGAACTGTGTGCTATGCGTGTACCATGTGGGTGCGCGTTCGTCC
GTATTGATCGATTGGCCTCGAAACGTGATGAATATTGATGAGTGATCCGA
GGAATATTTGATGAATATCGATGAGTGATCCGAGGAATTTTTGATGAATA
TTGATGAGTGATCCAAGGAATATTTGATGAATTTTGATGAGTGATTGTTG
GTTGTCATTTGGAACAGGCTCATGACAGGGGAGTGGAAAGCAGAGGCAGC
ACTCCGCGCTCTGCTATACCGCTTCATGGAGGACCGACGCGGACAAGATC
TAGAGCTGCATGGACAACCACTAGGGCAAGGGCATGGACATATTTCGCTA
CCGAGCCATTCGGGGAACATCGCGACCATGTCAGCGGTTAGCGCCTCGTC
GCTCTCTCCTCCTTGTGCCCCTGACGCGAAAGGCCTCGGTGTCCGGCAAG
ACGACGGCATCGAGGACATCGAGGAAGACGAGGTGGAAGATGAAGAGTTT
TGAGCGTCGACGCTGGTTAAACGGGAGATAATTTTTCTTGCGGCGAAAGC
CCTGTTTCCTTTTCAATTTTTTTTTTTCTAATGGGTTAGGGGCTAATTTT
ATTTCATTTTATTAATGGTTGTTGGGACTTTTTTTCAAGGGAAATTGAGA
GAAATAACCGTGACGGGGCGAGGGCTTTGTATCAATAGAGATGAGGCAGG
AGTTATAGCATAAAGCGGCATGTTTTTTTCCGCTACTTTTTTGTGTGCGA
GGGTTTTCGACGTGATTTCTTGGGCGTACTTTTGTCGCTATCAGGCGAAG
GGTGTAGGCAGATTTTTAGGGCACTCTTTATTGCGCGATAGAGATGCGGC
AGGAGTTAAGCATAAAGCGGCATGTTGCACCTTTCTTGTGTGCAAGGGTT
TTCGACGTGATTTCTTGGGCGTGCTTTTGTCGCTATCAGGCGAAGGATGT
GGGCATCTCTCTTGGGCACTCCCTTTTGCGCGGGGCTGGAGTTTTGTTCT
CATTGGCGGGAAGAAAACGTGAGGATTCATTTGATTGACTGGCGCGTCCG
CGTTCGCGAGTGCCCACGTGTCATGGGATCCGTCTGAGCCACGTACGTGT
GTCGGGTGGGTATCCATCGAAGGCATCAGGACATTTTTTACTGGGAAAGC
GGTTGCTGATGGAGATAAGCGATGTGCGTACGAGTAATGACCGTGAAAGC
GATAACATACTCCGCCCGCGTCCAAAGAGCGGACCACACGGGTATCGAGA
GTGTTTTTTTCAAAACCTCGCTGTGATCGATTGAAAAGTCTTTCACGAGA
GTATGAAGCACGTCGTGGGAAAAAAAAGAAGAAAAAAAAAAGCAACCGGC
ACTTTTTTTTCTTTTTCTTTTTAATACGGACGAGTACGTGCGTTACCTTC
GTAAAAATAGCCCCTCTGATTTGCTGTGGCGGGTGCTTGGGATGCCTATT
ACATGCCCACAGCTGCAATGTTGTAGTGCCTCTATTATATATTGTGCCTA
ATTGATAGAAGGCGGGAATAATGCCTCAGTTTTCGCTCTCAGGTTGCATG
ATCCGGCAGTCGGAGATCGTAAGGGAGTGTTTGAGGAAAGTCCGTCAAGG
TTCACCTTATCCCGTACCTGACGGACGTCAGGTCAGCAGGGGTCGAAATC
CCCCCACATCGACTTGTTTTCTGGGTAAAAATACGTGCGGGCCTCTGACC
CTGAAACCCGGGGACGGCTGTGTGTCCCCGATCACTCATCTCTTGATTTC
AGAGTTTGAAAATATGTGGGTTTTGCACTCAGTATGGACGTGCGTGTGAT
ACTCGTGCAGCGGCATACCTCAACTCTTTTCTCGCGGCGTTATCGTAGAG
GGGTGAACCGCACCTACTTGAATGCCCGGTGTATGTAAATAATAAAGTAT
ACATATCGGTTTGTGTGAGAGCGGAAAAACACTCCAAACTCATAAAAAGA
CGTCAGGTTACAACACAACTGTTGCTGTTTTGAGCTTGCGGATGAACTCG
CATACCCGGTATCGATAGTGCCATCATGTACTTGGACATGATCGCGTGTT
TTTTAGACGAAAGAGTAAAATTCACGGTCGGTGATATAGAGTGCAGGAAA
TGTGCCCACGTTGAGTGATCGGAGTTACGCCTCCATAAACCTCCAAAGAA
GTAATAATGAAATCATAG

Coding sequence (CDS) from alignment at P-canaliculata_contig10216:556..2923+

>mRNA_P-canaliculata_contig10216.341.1 ID=mRNA_P-canaliculata_contig10216.341.1|Name=mRNA_P-canaliculata_contig10216.341.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at P-canaliculata_contig10216:556..2923+ (Pelvetia canaliculata dioecious)
ATGCGGTCTTTCTCCGCCCCCAAGTCGTTCGACGTGCGCCGCCGTCGGGC
GGAGGCCGCCGGAGCCCTTCGACGCTTCGTTGGAGACGCCTGGGATGCCT
CGGGCGGGGACCTGAATGCCCTCTGGGCTTCGACCAGACACCTCAAGGAG
ACGGTCGACACCGAGCTGCTGCCCGCGGCAAGATGCGGTCTTTCTCCGCC
CCCAAGTCGTTCGACGTGCGCCGCCGTCGGGCGGAGGCCGCCGGAGCCCT
TCGACGCTTCGTTGGAGACGCCTGGGATGCCTCGGGCGGGGACCTGAATG
CCCTCTGGGCTTCGACCAGACACCTCAAGGAGACGGTCGACACCGAGCTG
CTGCCCGCGGCAAGGCTCATGACAGGGGAGTGGAAAGCAGAGGCAGCACT
CCGCGCTCTGCTATACCGCTTCATGGAGGACCGACGCGGACAAGATCTAG
AGCTGCATGGACAACCACTAGGGCAAGGGCATGGACATATTTCGCTACCG
AGCCATTCGGGGAACATCGCGACCATGTCAGCGGTTAGCGCCTCGTCGCT
CTCTCCTCCTTGTGCCCCTGACGCGAAAGGCCTCGGTGTCCGGCAAGACG
ACGGCATCGAGGACATCGAGGAAGACGAGGTGGAAGATGAAGAGTTTTGA
GCTCATGACAGGGGAGTGGAAAGCAGAGGCAGCACTCCGCGCTCTGCTAT
ACCGCTTCATGGAGGACCGACGCGGACAAGATCTAGAGCTGCATGGACAA
CCACTAGGGCAAGGGCATGGACATATTTCGCTACCGAGCCATTCGGGGAA
CATCGCGACCATGTCAGCGGTTAGCGCCTCGTCGCTCTCTCCTCCTTGTG
CCCCTGACGCGAAAGGCCTCGGTGTCCGGCAAGACGACGGCATCGAGGAC
ATCGAGGAAGACGAGGTGGAAGATGAAGAGTTTTGA